RNA id: XM_021579399.2


Basic Information

Item Value
RNA id XM_021579399.2
length 1626
RNA type mRNA
GC content 0.55
exon number 4
gene id LOC110501675
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 27539464 ~ 27544582 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaaaattggagacctccacaagtctggttcatccttgggagcaatttccaaacgcctgaagCATGAGGACGATTAATAGAGCTAGGAGGTGGAGGAACCTTATCAGATCGCTGATTATGCTGGAGAGTGTATAAATACTGAGGAAACCGTGAAGGTCACCACAGACCTGACGAAGAAACCTTCTGACTGCACCAGAATCAGCGGGCTATTTCAAACTTAACAGATATTTAGTAAATAAAACCATTTAGTTGTAGCGATGGCAATGTTCGGCAAGGTGCTGGAGCCGGTGGGCTACATGCAGACCATGAGGACTTTGGTGGAGGGCATCTGTACCTACCTGGGTGGCAGTGCCTCAGCTGAAGAGACAGACCTGGCCAGGAAGAACCTGGACTACATAGACCAGGAGCTGGCTGCTGCAGGGCCGGGCCTGTTGACCGACCAGGAGGTCCATCGGCTGGAGGATGACCTGGCCGTGGTCTATTACCAGCTGGGCGCGGTCGTCAGGGCCCAGTCTGAGTTCACCAAACGGGAGACAGAGGTGTTTCTCCAGTATGTTCAGGAGCACCGGCTGGAGAGGCAGCTGACGGCACTCCACAGCCGGCTGATGGGGGTGTCGGTCCTGACAGACCAGCCGACCCTGCTGGAAGAGCTGGTCCAGAGCCGCAAGCCCAAACGCTGGGAGATGAGGGAGTTCTGTGTCAAGGTGAATTTTGTTCTAGGCACGGGTCTGCTGTGCCTCTTCACCCAGGCCTTCCTTACGGGCCGAGATCAGGCCCTGCTGATGAAGACCTGGTCTGAGCGCATGGGTGCCCTCTACAGGAAGATGAAGACCACTGGGGGTCGCTGTTCGGGCTACTTCCTACAGCAGGCGGAGGAGGACGTGCGTCAGCAGCTGCAGGAGGCCATGCAAAGTCGTTCAGCTCCCGAGGAGGCGGCAGCCGGCATTCTAAAGACCCTGGAGAAGAACTACGACTGGCTGCGCTGGGCCGTCATGGTGCACCCTGCCATGGGGCCCTTGGAAGAGGATGGGGGGGAGGGCCAGGGGAACACACTACAGCCCAACCATTTCTTGTCTGTGTCATCTGAGGCACCATGCCCTCATGTGGTGGCCTGCTACCGTGACACGCCCACCTCACTGGACAAGAACCACATCCACCAGCTGATCGTGGACCTGGAGTGGAAGATCCCCAACCCACCTCCAGAGGTGTACGCTGCCATCGAGGAGGACCCAGGGAAGGCCCGACGCTACCTGGCCTCTCGCATGCTGAAGaagctgcaggaggggctgggcTCAGCGGTGGCTGTCCATGTGGTGCCGGGCAAGATGGAGATGAAGTGTAACTTCCCCCAAGCCGCCTACTACCTGTACGAGTACAAACATAGGCTGGCCTCGGGCACCTTGTGTGTGTTTGGATAAGCGAGAGGGGGGCTGGCTAGTCTTGCAGGCTTAGGTTCAGCTGCTGCATCTGCTGGGGCTGGGCACACATGAATGAATTCACTACTTTAAAAAAACTCCAGATGTTCAGTCAACTGAAACTATGTTTCCCTTTTTATTTCCGCTGTTTCATAACCAAATGTTTTATGTAACTGACATTTCTTCACAATAAACGattagaaaaacaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2054968 lncRNA downstream 19566 27519665 ~ 27519898 (-) True G1795603
TU2054958 lncRNA downstream 21926 27501691 ~ 27517538 (-) True LOC110501672
TU2054957 lncRNA downstream 22363 27501691 ~ 27517101 (-) False LOC110501672
TU2054966 lncRNA downstream 45032 27494157 ~ 27494432 (-) True G1795601
TU2054965 lncRNA downstream 45326 27493913 ~ 27494138 (-) True G1795600
TU2055003 lncRNA upstream 28977 27573559 ~ 27576953 (-) True G1795632
TU2055031 lncRNA upstream 65421 27610003 ~ 27610400 (-) True G1795660
TU2055065 lncRNA upstream 100241 27644823 ~ 27645027 (-) True G1795689
TU2055079 lncRNA upstream 130554 27675136 ~ 27675378 (-) True G1795703
TU2055083 lncRNA upstream 137593 27682175 ~ 27682438 (-) True G1795707
XM_021579395.2 mRNA downstream 21835 27501691 ~ 27517629 (-) False LOC110501672
XR_005038805.1 mRNA downstream 22002 27501691 ~ 27517462 (-) False LOC110501672
XM_021579394.2 mRNA downstream 22003 27501691 ~ 27517461 (-) False LOC110501672
XM_021579392.2 mRNA downstream 40839 27492474 ~ 27498625 (-) True LOC110501670
XM_021579393.2 mRNA downstream 40842 27492474 ~ 27498622 (-) False LOC110501670
NM_001124399.1 mRNA upstream 103148 27647730 ~ 27648708 (-) True il17d
LOC110502081 mRNA upstream 104652 27649234 ~ 27662614 (-) True LOC110502081
XM_036959032.1 mRNA upstream 162349 27706931 ~ 27738671 (-) False LOC110502082
XM_036959029.1 mRNA upstream 162349 27706931 ~ 27739829 (-) False LOC110502082
XM_036959030.1 mRNA upstream 162349 27706931 ~ 27740630 (-) True LOC110502082
TU2054267 other downstream 253369 27268662 ~ 27286095 (-) True G1794978
TU2052534 other downstream 1827845 25710573 ~ 25711619 (-) True LOC110501627
TU2051516 other downstream 2553196 24985959 ~ 24986268 (-) True G1792433
TU2051424 other downstream 2681579 24856824 ~ 24857885 (-) True G1792345
TU2051421 other downstream 2689712 24848591 ~ 24849752 (-) True G1792342
TU2055049 other upstream 196790 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other upstream 196790 27741372 ~ 27743599 (-) True LOC110501685
TU2055231 other upstream 436082 27980664 ~ 27981379 (-) True G1795850
TU2055220 other upstream 465073 28009655 ~ 28012690 (-) True LOC110501691
TU2055631 other upstream 789642 28334224 ~ 28334621 (-) True G1796204

Expression Profile