RNA id: LOC110502081


Basic Information

Item Value
RNA id LOC110502081
length 2117
RNA type mRNA
GC content 0.47
exon number 15
gene id LOC110502081
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 27649234 ~ 27662614 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgaagaccaaggagctcagGACCAGCTTCTCCAGGCCAGATAAGAAGGTGAAAATCCTGAAGAAGAAGGTGAATGACCTGATAGAGGAGAGCTGCCTGGCGCACAGCTGTGGAGTCCTACAGTTGGATGACACCCATGCCAACCTGGTGTTTGAAGCCATCAAGAATGACAAGCTTCaccagatggagagagaacgGAAAGCCCTGGCTGAGAAATTCATCATGACATCAGCCAAGCTCATCTCCCCAACATTCGCTGCTGGATTTGACTGGTGTGTCAACATGGTGAAGAGTTTCCAGTAAAACGACCTAGAGATCACCAAAGCCATCACCTACCTGAGACCGAGGGACTTCAACCAGGCTGAGGAGACTCTGAAGACGTTTGAGAAGAAAGACAGCAGAGTGAAGAGTGCTCCAGCCACGAAGCTCTCCTTCCTCTACTTCCTGAAGGACTATGACCAGGCTGACCACTATACTGACCTGGCCATGACGGCCGACCGCTACAACCCAGCGGCGCTCATCAACAAGGACGATACAGTGTTTGTGAAGAAGGACTATGAGAAGGCTACAGAGTTCTAAAAGGAGGCTCTCCGGAACGACTTGTCCTGCACTGAggccctactgtatataacctggGTCTGACCTATAAGCGTCTGGGGCATCTGGAGGAGTCTCTAGACTGTTTCCTGAAGCTCAAAGCCATCCTGAGGAACAGCGCTCATGTCATGTGTCAGCTTGCCGATCTCTTTGAGATGTTGGAGGACCCCCATCAGACCATAGAGTGGCTGCTGCAGCTGATCCGTGTGACACCCACAGACCCCCAGGTGATGGCCGAACTGGGAGAGCTCTACGACAGCGAGGGAGACAAGTTTAAGGCCTTCCAGTACTACTACGAATCCTTGAGGTATTCCCCCTCCAACATTGATGTTATTGAGTGGCTGGGGGCCTACTACATTGACACTCAGTTCTGTGAGAAGGCCGTCCAGTACTTTGAGAGAGCCACACTAATCCAGCGAACTCAAGTGAAGTGGCAGTTTATGGTGACCAGCTGCTACAAGAGAAATGGAAACTTCCAGAAAGCCCCGGAGACTTACAAAGATATCCACCGGAAATTCCTGGAAACCGTTGAATGCCTGGGTTTTCTGGTGAGGCTGTGCACAGACATGGGTCTGAAAGAGGTCCAGGACTACGCCACCAAACTGAAGAGGGTGGAGAAGATGGAGATCAGAGATCAGCGGGTTAAGTCGCCAAGGGAGGGCAGTGCTAGAGGGGCCCGGAGAGAGGGCAGCGCCAGCAGTGaTGCCTCCTATGTGGATCCACCAAAGACTGCATCCAAGAAGCACATAGAGGATGACGACTTTGCTGATGAAGAGTTGGGAGACGACCTACTACCAGAGTAGCCAGTTCCAAGTTCCCCTGATTCCCTCCTTGACAGTAAGGGCGTTTTCACATATGAAATTTGGTACACTGGTTCAGTTTCCTGGAGCATTAGTGAGAATTCTACAGAACATGTTTTGCTTCACTAGACCTGAAAATAACAGTTTCAGGGTGCGATTAGCAAGCCGCACATTCTACATGATGTTAgtgagctagctaggtagcttgtTTACAATGGGCAAAAAAGTTCCATGCTGACTCATTACAATACCTGGTACTCTGGTCCTGGATCTTGGACCCGCTACTATAGCATGGATCCGGATCATATATGTGAACAACAAGTTCAAAGAATCTATACATCGCATTCCACCAGAGTGGTGCAAACTGAGATGATTATTTTCCCATATGCTAGCCTTGATACATTTTATCACCTGGAAACTTTCTGGGAGAATCCATTGTTATTAACTCTATGGTAACCTCAGGACAGTAATACAGTTTTAACCCAGTTTAGAGGCTCTTCATTTAAATGTATACTTTATAAAATATGTTTATATTGCAAATAACTATTTTTCTAATCCGAAAGTCTTCCCTGGCTTTTTGTGTTCTGACTGAGGCAAAGAAGTGCATATATGCATCTGATTTGTCTATTTtcagatcatttaaaaaaaatgtcaccATACATTTGTGCTCTTGTTAATTTTGGATGCATGGATTTGGGTGTTAAAAAGATGAATTATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2055065 lncRNA downstream 4207 27644823 ~ 27645027 (-) True G1795689
TU2055031 lncRNA downstream 38834 27610003 ~ 27610400 (-) True G1795660
TU2055003 lncRNA downstream 72281 27573559 ~ 27576953 (-) True G1795632
TU2054968 lncRNA downstream 129336 27519665 ~ 27519898 (-) True G1795603
TU2054958 lncRNA downstream 131696 27501691 ~ 27517538 (-) True LOC110501672
TU2055079 lncRNA upstream 12522 27675136 ~ 27675378 (-) True G1795703
TU2055083 lncRNA upstream 19561 27682175 ~ 27682438 (-) True G1795707
TU2055084 lncRNA upstream 20466 27683080 ~ 27688572 (-) True G1795708
TU2055105 lncRNA upstream 171808 27834422 ~ 27838560 (-) True acbp
TU2055147 lncRNA upstream 202029 27864643 ~ 27865088 (-) True G1795771
NM_001124399.1 mRNA downstream 526 27647730 ~ 27648708 (-) True il17d
XM_021579399.2 mRNA downstream 104652 27539464 ~ 27544582 (-) True LOC110501675
XM_021579395.2 mRNA downstream 131605 27501691 ~ 27517629 (-) False LOC110501672
XR_005038805.1 mRNA downstream 131772 27501691 ~ 27517462 (-) False LOC110501672
XM_021579394.2 mRNA downstream 131773 27501691 ~ 27517461 (-) False LOC110501672
XM_036959032.1 mRNA upstream 44317 27706931 ~ 27738671 (-) False LOC110502082
XM_036959029.1 mRNA upstream 44317 27706931 ~ 27739829 (-) False LOC110502082
XM_036959030.1 mRNA upstream 44317 27706931 ~ 27740630 (-) True LOC110502082
XM_021579416.2 mRNA upstream 78761 27741375 ~ 27744078 (-) False LOC110501685
XM_021579417.2 mRNA upstream 78761 27741375 ~ 27770698 (-) False LOC110501685
TU2054267 other downstream 363139 27268662 ~ 27286095 (-) True G1794978
TU2052534 other downstream 1937615 25710573 ~ 25711619 (-) True LOC110501627
TU2051516 other downstream 2662966 24985959 ~ 24986268 (-) True G1792433
TU2051424 other downstream 2791349 24856824 ~ 24857885 (-) True G1792345
TU2051421 other downstream 2799482 24848591 ~ 24849752 (-) True G1792342
TU2055049 other upstream 78758 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other upstream 78758 27741372 ~ 27743599 (-) True LOC110501685
TU2055231 other upstream 318050 27980664 ~ 27981379 (-) True G1795850
TU2055220 other upstream 347041 28009655 ~ 28012690 (-) True LOC110501691
TU2055631 other upstream 671610 28334224 ~ 28334621 (-) True G1796204

Expression Profile