RNA id: XM_036959032.1


Basic Information

Item Value
RNA id XM_036959032.1
length 5434
RNA type mRNA
GC content 0.53
exon number 24
gene id LOC110502082
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 27706931 ~ 27740630 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tTCGCCGCAAATCCATTTCGTGGAAGGCCGGGCAAGCAGAGGTGGGAACGGAACTGAACCACGTTTTGTGGTCCTCAAATTAGCTCACTGACCCcatctacccctctcctctgttcGTCAGTGGGTCTTCTCGGGTGGTAGCAGTCTAAATGATGGATGGGGAATCAGAGGCCAAACCTcgagtagaggaggagagcacaGCCCCAGATAAGGAACCCATGGACACAGACACTACTCCCTCAGAGCAAACTACACCCCCCATGAGAACCCAGGCTCCTGTCACCAAGGCAATAGAGGAACCCTCCATGGTTATAGAGAACAATGACGATGATGATGTGGTGCTGGTGGAAGAGGCCCCGTCTCCCTCTGCTACTCCCTCTTTCCAAGCTGCCTCCACACCCACAGACAGCACCGAGCCCCACCCCACTGAAACAGATACCACAGCAATGATCAACACGACAACAGCCACAGCCCCCGCCAAGATCCCCAGTCCACCCGCCACCTATTCTGCAGCACCTACAGAGCCCATCGTCATTGACGATGAGGAGGATCCCGGGCACAGAGGCTTTTCCTCACTTGCTACAGCCGGAGGCCCTTCTTCAGATAGCGAAGGCATACTGAGCAGCACAGAGCCCGATTCTGAGATAAAGATTGCCAGTGTCACAACGCTGGGGCCCTCTGTTGCCACGGCAGCTACAGCAGCCGAGCCAATGGCGGAAGGGGACATGAACCTGGTGATCACCAGTGTGACATCACTGCAGGGCGGGGTGGGCATGGTGGAGAATGGCTTGCAGATCAGCAGCACCTTCAGTCTGAATCCTGAGGCCCAGAGCTCCATCAGCACCAACAGGCTCCCGGCCACCTTCAACCCTGGCCGGGTTAGCAACATCTCCACCACTAGCCAGCCTGTACAGAACGGAGACACAGTGACCCACCAGACGCCTGATTCGTGGATCTCCCAGTCGGCCTCGTTCCCGCGAAACCAGAAACGGACGGGTGTGGACTCTACATCACCAGCCGTATCCCTGCCCAAACCACCCGGCCCCTCCCCCTCAGGCTCCCAGAACCCCCCTCGCACTGTCAAGGTGACCTGCGCCAATTGTAAGAAGCCTCTGAAGAAAGGCCAGACGGCTTACCAGCGGAAAGGGTCCACACACCTTTTCTGTTCCACCACCTGCCTCTCTTCCTTCTCACACAAACCTACCCCTAAGAAGAGCTGCACCATGTGCAAAAAGGACATCACTACAATGAAGGGCACTATTGTGGCCCAGGTGGACTCCAGTGAATCGTTCCAGGAGTTCTGCAGTACAGGCTGTCTGGGAGCCTACGAGAATAAACAGAACCCACCCAAGTCCTCCCTTAAAACTAAGTGCACTGTCTGCAGCAAGCTTACTGAGATCCGCCATGAGGTGAGTTTCAAGACTGTCACGCATAAGATCTGCAGCGATGCCTGTTTCAACCGTTACCGCATGGCCAACGGGCTCATTGTGAACTGCTGTGAGCAGTGTGGTGAATACCTGCCCAGCCGCGCCACCGCCAACCACTTCCTCATCATCGATGGCAAGCAGAAACGCTTCTGCTGCCAAAACTGTATCAGTGACTACAAGCAGGCCAACTCTAAGATGACGATGTGTACTGGCTGTAGGGCCATGGTCCGGTCTAGTGAAGTAACTCACTGCATCGGGGCCAGCGGCTCAATGGAACCATACTGCTCCACAGCCTGCATGAACAAGACCAAGATCGCCAGCAGCGCTACCACTATCCTCCAGCCCACGTGTCACTTCTGTAAGAAGACATCGTTACCTCAGTACCAGGCATCACTGCCTGAGGTGAAGGCCGTAAACTTTTGCAGCTCAATGTGTGTCACCAAGTTCCAGaATGCAACCATTCATACAGTAACCAATGGACAAGCTCCCATGTCTACAACGAACCACAACATCCAGCTCAAATGTAATTACTGTCGAGGAGCATTCAGCCTAAAGCCTGAAATCCTGGAGTGGGAGgatagaGTGTACCAGTTCTGCAGTAAAATATGTTGTGAGGACTACAAGAAGCTGCACTGCATCGTCACGTTCTGCGAGTACTGCCAGGAGGAGAAGACGCTCCACGAGACTGTCAAGTTCTCTGGAGTCAAGAGGCCCTTCTGCAGCGAAGGTTGTAAGCTGCTGTTCAAGCAGGACTTTGCCAACCGGCTGGGTCTGAAATGTGTCACCTGTAACTACTGCACTCAGCTGTGTAAGAGAGGAGTAACCAGGCAGCTGGCTGGTGTTTCCAGGGACTTCTGCAGTGAAACCTGCGCCAAGAAGTTCCATGAGTGGTACTACAAGGCGGCGCGTTGTGACTGCTGTAAGGTGCAGGGGAACCTGACTGAGTCGGTACAGTGGAGAGCAGAGATGAAGCACTTCTGTGACCAGCAGTGTCTCCTCCGTTTCTACTGCCAGCAGAACGAACCCAACCTGGAAACGCAGAAGGGCCCAGAGAACACCAGACTTGgATTTGGAATACAAACCGAGGCAACCAACATTGCGATGTTGAGTCAGCCGTACACCGGTGGAGGGATCCTAAAGGATGTGAAGAATAAAGCTGTGCTCTGCAAGCCTCTCACTATGACCAAAGCCACCTACTgcaaaccacacatgcagagcaaGCTCCTACAGACGGATGAGGATGACGGGGTGAAGAGGGAGTACATTCCCGTGCCCATCCCTGTACCCGTGTTCATCCCCGTTCCCATGAACCTCTACGCCCAGGTTACACCCATGCCCATCACACTACCCGTCCCGGTTCCAGTGCCGGTATTCCTGCCGACCACGATGCAGGGTGCAGATCAGATTGTCCAGACCATCACAGAGCTTAAGGCCAAAGTCCCTACTGACCCCCACGAGGCTGACCTCCTCTCCATAGCTGAGATGATCGCAGAGGACCAGAAGccagATGTTAAGagggagcgaggaggagaggccaGGTCCAGCAGCTCCAGTAGCAGCAGCTCTGAATCGGATGGGGAGGATGAGAAGTATGAACCAGACCTGGACCTGGAGAACGACTTTCCTCAAGACCCTGTCCCTGTGCTGGAGGGCCTGGACGTGGACATGGGGTTCACCCTGCCCCCTCTCCTGGCTGAGGAGAAGGAAGTGGCACCCAGAGCCAGGAGACAGgGACACAAGAGGCGAGCTGTGGAGGgacactccccctccccccctacaCCAGATGGTCCTGTGGAGGGGCGCTCGCTACCCCTGAGATCTCGCTACGCGGTCAACGCCTGGAAAAGTTGGGCGCTGTCCTCAGCTGAACAATCAGAACCTCCACCGGCCCGGTCGACAAGTAACCCGCTCTCTCTGAAAGCATCAGAACTCAGCCTGGCCCTGTCACGATTTGTCCATGAGGTACGGCGGCCCAACGGGGAGTGCTACGCCCCCGACAGCGTCCTCTATCTCTGCCTGGGCATCCAGCAGCATCTGCAGGCCAAAGGCAGGAAAGATGACCTGTTCAGTGACCTGTGCTATGAGCCGTTTGGAGAGGAGCTCAACAAGGTCCTCAAAGACTGGCAGCCCAGCGTGATGCCTGATGGCTCTCGGTGGGGCCGTGTGGAGGAGCAGTGCCTGTGGAGCTGTAAGCTGCTGGGGGAGCAGAGTCCTGCAGCATTGCTGCGCTCCCTGGTTTATCTCAACACCAAGTACTTTGGCCTGCGCACCGTGGAGCAGCACCTGCGCCTCTCTTTCAGAAATGTCTATGGCCCTGACCACACAGACCCAACCACACAGGAAACCACTGTCTGCATCTGcatcccctccttctccccacaGGACCACCACTTAACAACAGGGTCCAGGAAGAGGAAACGTAAAGAGGACAGTGATGCAGCCTACGAGCCAGACGACGGCTCGGGAAGCTCCACACACTGTCCAGTCAAAAAGCACGAGGGCAGATTCTACGAACTCTACCGTTCCAAATGCCCAGGGTCGTTGAGTCAGCGTATGGATGTGTTCTATATGCAGCCAGAGTCATCGGGCAGCAGCAGTGACAGTGACAGCTCCCTGTGGTACTCCTCTACTCCTATGGACCGCAGTGTCCTGGAGAGcatcctcacccctctccttctggTAAAAGACATCTACAGAGAGCGCCATctagaagaagaggaggagGCCAGCTGTGAGCGTACAGTGGATGTCCAGTTGGAAGGGACTACACATGCCCAGAGCTGATCGGAGGACGGTGTTTCCCTGAAGGGCCAAGGAAGGGGACTCTGACTGCGAGTAGCTAGGGTGATATTGGAGTGTGTCGTGTGAAAAGCAATTCCCCAAGAACTGTTGCCCTTCCTTCCATAGGGGAACTCCGTTCATGTGATGTAGCATTACTTGCTAAGCCCAGATTGGGCTGCTATGCTGTGTAACTATTTCTGAAAGTTAAAAGTAGTAgatgggaagagacagagacatccACAAGAAATGCCCACCGAATCCTCCGCTTTGACCCCCAGAAGCTTTTTTAAAGATGAGACATTTATTTATTGCGGTTGATTGATTGCTTCTAttgtacattttgttatttttacGCCGGGATGGGATGTGTGTTCGATTGTGCCCCATGTGCCATTTTCCTCTCCTCCATTAAGAGCATGAATTAGTTGATCAATTAAATCTGCTGCAGCCTGGAGCTCTCCCGTGTCCCTGTCTTTCCCTTCTCTTTGTCCTGAGGGGGGCTGTAGGGGTACTGTCTGGGGCTTCAGAGTAGTTGCAAGTTCAAGTATGAAGGAGATGGTATCCTGCCGAAAGACTATATTTTGTCAGTTTGAAttccattgtgttttgttgtCTCATTTAAGCTATTTGATGTTTATTATTTAGTTGAAAACGTAGCACTTGATAATGGGTGATGTATTACTCCCAACTAATGAGTGATAATCTGTTAAAACGGCAACAACTGAAACTGTTTGTGTTGCAACTAGGGTGGTCAGATCTCTTTCAGGAGTAGCACATTATAGACCTGCCTGGTTACGTTTCCCAAATTCACTCCATCTCCAGGCATCCAAGTTACAATAGAAAGCTCTgaatttgtccccccccccctttttaagttttattttattttctatcaatAAATTACACAAGCGAATACCTCGTTTTTACGTTGACTTCTGAATAGgattttgtttgttttagttttcTTTGAATGACACCTGCCTTGCCTAATGACTTCCATGTAATGTCTGGAGACCACGCTTCGAAGCTGGAGGGTGTCTGGATAGAGCCTGTCAAGGAAAGGAAAAGTCACGGTTGGGTCTGTGAATGACTGGCTGGCTCTGAAGCCTAATGTGAATGTGCCTATCTGTGTGTACTGAAAGTGTGTGTAACTTCACGAGAGGTTGATGCCGTGTGGGCTGACTTGACAAAATAAATCATTTCATTTCTTAATGTTTATCCTCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2055084 lncRNA downstream 18359 27683080 ~ 27688572 (-) True G1795708
TU2055083 lncRNA downstream 24493 27682175 ~ 27682438 (-) True G1795707
TU2055079 lncRNA downstream 31553 27675136 ~ 27675378 (-) True G1795703
TU2055065 lncRNA downstream 61904 27644823 ~ 27645027 (-) True G1795689
TU2055031 lncRNA downstream 96531 27610003 ~ 27610400 (-) True G1795660
TU2055105 lncRNA upstream 95751 27834422 ~ 27838560 (-) True acbp
TU2055147 lncRNA upstream 125972 27864643 ~ 27865088 (-) True G1795771
TU2055156 lncRNA upstream 192368 27931039 ~ 27935284 (-) True G1795777
TU2055254 lncRNA upstream 285067 28023738 ~ 28023937 (-) True G1795871
TU2055270 lncRNA upstream 305580 28044251 ~ 28044507 (-) True G1795885
LOC110502081 mRNA downstream 44317 27649234 ~ 27662614 (-) True LOC110502081
NM_001124399.1 mRNA downstream 58223 27647730 ~ 27648708 (-) True il17d
XM_021579399.2 mRNA downstream 162349 27539464 ~ 27544582 (-) True LOC110501675
XM_021579395.2 mRNA downstream 189302 27501691 ~ 27517629 (-) False LOC110501672
XR_005038805.1 mRNA downstream 189469 27501691 ~ 27517462 (-) False LOC110501672
XM_021579416.2 mRNA upstream 2704 27741375 ~ 27744078 (-) False LOC110501685
XM_021579417.2 mRNA upstream 2704 27741375 ~ 27770698 (-) False LOC110501685
XM_036959033.1 mRNA upstream 7004 27745675 ~ 27770708 (-) False LOC110501685
XM_021579422.2 mRNA upstream 37900 27776571 ~ 27817123 (-) False LOC110501686
XR_002470238.2 mRNA upstream 40026 27778697 ~ 27817123 (-) False LOC110501686
TU2054267 other downstream 420836 27268662 ~ 27286095 (-) True G1794978
TU2052534 other downstream 1995312 25710573 ~ 25711619 (-) True LOC110501627
TU2051516 other downstream 2720663 24985959 ~ 24986268 (-) True G1792433
TU2051424 other downstream 2849046 24856824 ~ 24857885 (-) True G1792345
TU2051421 other downstream 2857179 24848591 ~ 24849752 (-) True G1792342
TU2055049 other upstream 2701 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other upstream 2701 27741372 ~ 27743599 (-) True LOC110501685
TU2055231 other upstream 241993 27980664 ~ 27981379 (-) True G1795850
TU2055220 other upstream 270984 28009655 ~ 28012690 (-) True LOC110501691
TU2055631 other upstream 595553 28334224 ~ 28334621 (-) True G1796204

Expression Profile