RNA id: XM_021579416.2


Basic Information

Item Value
RNA id XM_021579416.2
length 1833
RNA type mRNA
GC content 0.39
exon number 3
gene id LOC110501685
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 27741372 ~ 27770708 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctttctattcttgttagagccagtttgcactgtactgtgaagggagtagtacacagctcttcagtttcttggcaatttattgcatggaatagccttcatttctcagaataagaatagactggcgagttttagaagaaagtcctttgtttctggccattttgagcttgtaatcgaacccacaaatgctgatgctccagatactcaacttgtctaaatAGTTTTATTGCTGCTTTAATCAGaacaagttttcagctgtgctaacataattgcaaaagtgttttctaatgatcaattagccttttaaaatgataaacttggattagctaacacaacatgccattggaaaacaggagtgatggtttctgataatgggcctatgtagatattccataaaaaatcagcagtttccagctacaatagtcatttacaacattaacaatttctacactgtatttctgatcaattttgttattttaatggacaataaaTGGTAGTGTAGGTCTACTTGTTTTATTAATGTTGCTATTGATTTCACAGCAGCAGTTTAAGTTTTTCAACACTAATTTAGGCTGACTAACCTGTATAGGGTGTGATAGCCGTTGCTTCTCTATATTATTTAATCCACTTGACTACTAATATTATATATTTCATCCACTTGCCTCCTAGATAATGTTATTATTGCAAGTCAATCTTTGTTGATTCTAATTGCATTAAGGTTCAAGGAGGAATTATGTAACTAAATGAGTGTTTATATTTATCAGTTTGTGTAATAACTGCAACAGATCTGCTACGGTGTTAGGTGTTAACTGAGGAAAAATAATCAGGGGTTTCAACCACACCCCACTATTTACTGTCTAAAGAtgtttaaatagttttttttcaccAACATGTATTTGTTATCAAGCTGCCTTTCGTTACCCCCTGGTGTTCATTGTGTGTAATCTAAGATACCATATTTGCTTCGTTAATAAATTGTTACTTGATGtaaatgttaaaatgttattCCAGTTCTCAGAATATTCATATAGCCTTCTTGAGGTCCACCATTAGTGTTCCAACAGGGATTTAGAATTGTACCAATAACAGTTCAAGGAAACAGCTTTGAGATTTCATGATGTTGTAATGCTAGGAATCTATCATCACCATTGCTTTATGCTTTCATGAACTTAACCTTTTTGGATGAAAAGACAACGCCCTAGGTAAGTATACAATCAGCTAAACCTTCAAATAAGTGAACTGCCCCTCTAATTATTTAAGCAATTAGCCCCTCCCCATTTATTATCATATATAACTTGCTTGCTACAAGTGGCTTTGGAAAGCTGTGGTCCTCGGTAAtgaaggtgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgttgcctcCCACAGGACTCCAGTGGTATTTCCAtgagtatgttggcagcagcaggGGGACAGGATGACATCCTGAGGCTGCTGATAAAGAAGGGGGTGAAGGGGAACGGACGGCAGAAGAACGGCACTACTGCCCTAATGCACGCTGCGGAGAAGAACTTCCTGACCACAGTTGCTATCCTCCTGGAGGCAGGGTCCTATGTCAACGCTCAGACACTGGGAGGAGAGACGGCCCTGATGAAGGCTCCTGGGCAGTCCTTTATCTGAACGTCATCAGTAGAGAGTCCTTTTGAGGACGAACAAAATGGCCGGAGCGGATTGAGTGACGGTTGCAAGACTCATAGGGCTGTGGTCCAATTTCTCCCCCTATTGCATTTTTGTTTTAACTCCCCCTCATCGATTGAAAATAAATTGACTTTAtgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2055084 lncRNA downstream 52803 27683080 ~ 27688572 (-) True G1795708
TU2055083 lncRNA downstream 58937 27682175 ~ 27682438 (-) True G1795707
TU2055079 lncRNA downstream 65997 27675136 ~ 27675378 (-) True G1795703
TU2055065 lncRNA downstream 96348 27644823 ~ 27645027 (-) True G1795689
TU2055031 lncRNA downstream 130975 27610003 ~ 27610400 (-) True G1795660
TU2055105 lncRNA upstream 90344 27834422 ~ 27838560 (-) True acbp
TU2055147 lncRNA upstream 120565 27864643 ~ 27865088 (-) True G1795771
TU2055156 lncRNA upstream 186961 27931039 ~ 27935284 (-) True G1795777
TU2055254 lncRNA upstream 279660 28023738 ~ 28023937 (-) True G1795871
TU2055270 lncRNA upstream 300173 28044251 ~ 28044507 (-) True G1795885
XM_036959030.1 mRNA downstream 745 27706931 ~ 27740630 (-) True LOC110502082
XM_036959029.1 mRNA downstream 1546 27706931 ~ 27739829 (-) False LOC110502082
XM_036959032.1 mRNA downstream 2704 27706931 ~ 27738671 (-) False LOC110502082
LOC110502081 mRNA downstream 78761 27649234 ~ 27662614 (-) True LOC110502081
NM_001124399.1 mRNA downstream 92667 27647730 ~ 27648708 (-) True il17d
XM_036959033.1 mRNA upstream 1597 27745675 ~ 27770708 (-) False LOC110501685
XM_021579422.2 mRNA upstream 32493 27776571 ~ 27817123 (-) False LOC110501686
XR_002470238.2 mRNA upstream 34619 27778697 ~ 27817123 (-) False LOC110501686
XM_021579421.2 mRNA upstream 42118 27786196 ~ 27793639 (-) False LOC110501686
XM_021579420.2 mRNA upstream 42118 27786196 ~ 27793640 (-) False LOC110501686
TU2054267 other downstream 455280 27268662 ~ 27286095 (-) True G1794978
TU2052534 other downstream 2029756 25710573 ~ 25711619 (-) True LOC110501627
TU2051516 other downstream 2755107 24985959 ~ 24986268 (-) True G1792433
TU2051424 other downstream 2883490 24856824 ~ 24857885 (-) True G1792345
TU2051421 other downstream 2891623 24848591 ~ 24849752 (-) True G1792342
TU2055231 other upstream 236586 27980664 ~ 27981379 (-) True G1795850
TU2055220 other upstream 265577 28009655 ~ 28012690 (-) True LOC110501691
TU2055631 other upstream 590146 28334224 ~ 28334621 (-) True G1796204
TU2055669 other upstream 690837 28434915 ~ 28438771 (-) False G1796239
TU2055842 other upstream 882060 28626138 ~ 28626891 (-) True G1796401

Expression Profile