RNA id: XM_036959033.1


Basic Information

Item Value
RNA id XM_036959033.1
length 4136
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC110501685
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 27741372 ~ 27770708 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCCCACCGAAGAAGAACTGCTCATTGTCGCGCATGCGTTCCTCGATGTATGCCAAGGCACAAAAGTGGCGCTATATCGTTTCAACCTCTACTCAGGTACAGGTGGTAGCAGCCTAAATGATGGACGGGGAACACCAGGAAGAGAATCCTTCACATGAGAAAGAAAATGCTCTACACAATGAAGAGAAGACTTCATGTGATGTGGAGAAGACTTTATGTGACATGGAGAGAGCTTTGTGTGACATAAAGAAGAGTGCTGAAGAGAGCATTTCAAGTAATGACGAGAACAGTTCAGATGATGAGGTTGGACAAAGACTGGATTCAAAAGCCCCAAGTGGCTCAGAGCCTCTTCCATCTAATGCAGAGCACCCCTGCGATAATGAATCTGAGCCGTTGCCACAAAAAACCTCCCAAACTAAAAAACCTCAACGCAAGAAATTCGCACCACGGAAAGGTACAAGGTCAAGCTTACGTTCTAGCACAAAAATTACAGTCAGCACATGTAGTATGACAGATGATGGTAAAAGAAAATGGGACAAAAAACACTTCTGCCTGTATTGCAATGAACCACACCACAAAATTGCAAGACATTTAGAAAGGATACACGCAGAAGAAGCATCTGTCGCTCATGCTATGAGCTTCCCCAAACTCTCCAAAATCAGGTCTCTTTTGCTTGACCAACTCCGTAACAAAGGCAACTATCAAGTTCTTCAAAGTGGAGATGGAGAAATTGTGACTAAGGATAGACCCTCTTACGATGGTGTTTCTGTGCGTGACTGCCTGCCCTGCCAACACTGCTTAGCTTTTTTCAACAAAATAGATTTATGGAAGCATGAGGGCTCATGTAAAGCCAGAAAAGGACAAGATGAAAAGAGGGGAGGAAAAAGAGTGCGGGTCCAGGCTGCGTCCTCTCGACTTCTTCCATTGCCTGTCTACTCTACTGGAGGATGTGAAGAAATAATACACAATATGAATCAAGATGACATCTTATGCCACATCAAAAATGATCCCCTAATATGTAAATATGGCAATGCATTATCTGCAAAGCATGGCCATGCCAAGTCACAGTTTACATACATTGGATCAAAAATGAGGGAATTGGCTAGATTTGTACTTACTGTAAATGAGATGGACTGTGGTGTCCAATATCTGCATGAAGTATGTGTACCATCCAAATTCAAATTGGCCGTTCATGCTGCCAGGAAAATGAGTGGTTTTGATCCTGCCTCCGACAGGTACAAGACCCAATCTCTTCCTTTAAAGATTGGCTATTCCTTGAAAAGAGCTACTGAAATAGCTTTTGGGGAGAGTCGTATGACAGAGGACCGTGATGCAGAGGCACAAGCCAGAAGGTTCATTGAGCTTCTTGAAAACGATTGGAATAACTGTTTTTCCGGTTTGTCCCTCAGCGCTGTCCCTCAGTGTGATGAAGTTGATGTGTCTTCACTAACTGAGGATTTGATTAAACTTCAGAAGTTTCTCAAGGTTGCAGAGGACACAGCAAAGAGAGAATTGCTCGAGAGCCCCACCAACGCTGTCTGGAAAAAGCTAAATGAAACTCTTCTTGCCGAAATAGCTCTCTTCAACAGAAAAAGGACAGGAGAGGTTGCGAAAATGCTGTTGGAAACGTACACAAACAGAAAGAAATCTCCAGCTAGTGCAGACATTTTCAATAGCCTCTCAAGGCTGGAACAGGAGCTTGGTGACGACAAACTAACCAGGGTGGAAATAGAAGGCAAAAATGGTAGAACAATGCCGGTCCTACTAACGGCAAGGATGATCTCATCTCTTGAGATCCTAATTGCAAACAGAGACAAAGTTGGTGTGTCAAAGGACAACCCTTATGTCTTTGCACGGAGCCCAGATGCAGCAAGCTACGTCAGAGGGTCTGACTGTTTGAGAAAATTTGCGCATGAGTGTGATGCAAAGAATCCTGAAAGTCTGATCCATGCTACAGTGAGGAAAGAGGTTGCTATCCATTGCCAAATTCTGAACTTAAATGAAAGTGAATTGGATCAGGTGGCAAAATTATTGGGACATGACACCCAGGTCCACAAAGAGTACTACAGACTGTCTGAAAACGCAGCACATCTAGCAGAAATCAGCAAATTGCTGCTTGCAATGGATCAGGTTCCAGTGGTAATTCCAGGACCATCAGAGGAAAGGATTGTTTCACCTACATATGGGGCATATTCTGCAGGGACATATTCAGCGGGAACCGATTCTGCGAGGGCGTATCCTACTGGCACATATACCACTGGGTCATCTTATCCTACAGCGACATATTCAGCGAAGTCATATACATTGGGGGCACAGCCTTCAAGGTCATATCATGCTGGGACATATCCTGAGAAGTCATATCCTTCTGGATCACATTCTGCAAGGTCATATCATGCTGGGACAGATTGTGCAAGGGTGTATCCTACTGGGATAAATCCTGCTAGATCATATTCTGTGACACATCCTGCAGAGACCTATCCAGCAGCTTCGTATGCTGCCGGGACACATCTTGCAAGTTCGTATCCTGCAAGTCCTTATGACCTATCATCTCCTGCAAGATCATATACTTCGGGGACAAATCCTGCAAAATCATATCCTGAAGAGACATATCCTATGGGGACATATCGTGCAGGGACACATCTTGCGGGGTCACAACTTGCAAGGTCATATTCTGCCGGAACATATCCTGCACAGACACTTCCAGCGCGTACTGTTATTACGCCAACACTTAATGCACAGACACTTCCTGTTGGGGCAGTGCCTGCGGTTGCCGTTCCTTTGGGTGCAGTTCCTTTGGGGACAGGTTCTGTGGGGACAGATAAGGTGGGCACAGTGTGGAAACAGAGGATGTGGAGTGATGCAGCTAAGGCTGCAGTGAACCGTCAGATGGGACACTTTATCTCAATGATGGAGGTTCCAGGTAAACAGGACTGTGAAGTTTGCCTGCACAATGAACCAGCTCTAAGAGACAGGACATGGAGGGACATCAAAAACTATGTGCACAACACAGTAAAATCTATAAAACGAAAGAATGGCCTTACAAGAGTGGACCCCACAAAACAAACAAAGAAAGGAGCAGCAAAGAAACAAAAAGAGGCAAAGCGTGCTAAGGAATGGGTTGGTGGAACAATTACAGTACCTGCACAGGGTCAAGAAGACAGACTTGAGGCAGGTCCTGTGGCAACACCAAGGAAACAGAAGATATGGAGTAATGAGGCTCAGGCTGCGGTCAGGCGGCAGCTAGGAGACTTCACTAAACTGATGAAGATTCCAGGTAAAAAGGAATGTGATGCATGTCTTGCAGCTGAACCAGCTCTGCAAGGCAGGACATGGAAAGATGTAAAAAACTATGTGCGTAATACATTAATGACAATGTGCAGGAGGCATATTTCAGGCAAACAAAACATGGACCATGAAAAACCAAGTCCAAGGACACCGAAACCAGGGGTCCAACAAAATCCAGGGGTGCATCAGAAACCAGGGACACTGTTGGGACTTCCAGAAGATCCTCCTGTTTATCTGTATTTATGATTACCTTGAGCTAGTTTTAAAAGCTTTTGATTTAATCTGACATCCTTGCTCATTCTGATCTCACTTTGTAACATAAAGCAAGAATGTAGAACCATTTTAAGGACATAATATCACTACGTACTTTATTCTACAAATGTATCCGTAGCAATTAGACTACATAGTGACGTAGTATGAATATAAACTTGTTTAGCTGAATTTTACGTACGTTTTCTCAGCTTTTTAAATTTTTTTGGCACAATGTATTCTGACGCCCAAATTCAAAATCCTTTGGCATGAGCTACACCAACGATGTAtgtaaaccctggattgctgatgctatgtattgtcCTTTAAGAGGCTTTGAAGACACTGGTTGGCCTTGTTGGCACTCCCCACTAGGAgtagtcctccataggaatgactGGACTTCTACAGTATTTTAATTAAATGTGTTTTGGTGTTGTTGTAGtgaggacagtaacattagtactctAAAATACTTTAAGGAAATTGTATTTTTGCCTGTACCATTGTATGTGTAGGTTAGGTTTTGAATTAAAACAACTGTTCAGCAAACCGAGGATTTAGTGGGTTAGGCTATTCCTGGTAGAAGTGCGGTGTGAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2055084 lncRNA downstream 57103 27683080 ~ 27688572 (-) True G1795708
TU2055083 lncRNA downstream 63237 27682175 ~ 27682438 (-) True G1795707
TU2055079 lncRNA downstream 70297 27675136 ~ 27675378 (-) True G1795703
TU2055065 lncRNA downstream 100648 27644823 ~ 27645027 (-) True G1795689
TU2055031 lncRNA downstream 135275 27610003 ~ 27610400 (-) True G1795660
TU2055105 lncRNA upstream 63714 27834422 ~ 27838560 (-) True acbp
TU2055147 lncRNA upstream 93935 27864643 ~ 27865088 (-) True G1795771
TU2055156 lncRNA upstream 160331 27931039 ~ 27935284 (-) True G1795777
TU2055254 lncRNA upstream 253030 28023738 ~ 28023937 (-) True G1795871
TU2055270 lncRNA upstream 273543 28044251 ~ 28044507 (-) True G1795885
XM_021579416.2 mRNA downstream 1597 27741375 ~ 27744078 (-) False LOC110501685
XM_036959030.1 mRNA downstream 5045 27706931 ~ 27740630 (-) True LOC110502082
XM_036959029.1 mRNA downstream 5846 27706931 ~ 27739829 (-) False LOC110502082
XM_036959032.1 mRNA downstream 7004 27706931 ~ 27738671 (-) False LOC110502082
LOC110502081 mRNA downstream 83061 27649234 ~ 27662614 (-) True LOC110502081
XM_021579422.2 mRNA upstream 5863 27776571 ~ 27817123 (-) False LOC110501686
XR_002470238.2 mRNA upstream 7989 27778697 ~ 27817123 (-) False LOC110501686
XM_021579421.2 mRNA upstream 15488 27786196 ~ 27793639 (-) False LOC110501686
XM_021579420.2 mRNA upstream 15488 27786196 ~ 27793640 (-) False LOC110501686
XM_021579418.2 mRNA upstream 15488 27786196 ~ 27817123 (-) False LOC110501686
TU2055049 other downstream 2076 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other downstream 2076 27741372 ~ 27743599 (-) True LOC110501685
TU2054267 other downstream 459580 27268662 ~ 27286095 (-) True G1794978
TU2052534 other downstream 2034056 25710573 ~ 25711619 (-) True LOC110501627
TU2051516 other downstream 2759407 24985959 ~ 24986268 (-) True G1792433
TU2055231 other upstream 209956 27980664 ~ 27981379 (-) True G1795850
TU2055220 other upstream 238947 28009655 ~ 28012690 (-) True LOC110501691
TU2055631 other upstream 563516 28334224 ~ 28334621 (-) True G1796204
TU2055669 other upstream 664207 28434915 ~ 28438771 (-) False G1796239
TU2055842 other upstream 855430 28626138 ~ 28626891 (-) True G1796401

Expression Profile