RNA id: XM_021579420.2


Basic Information

Item Value
RNA id XM_021579420.2
length 5847
RNA type mRNA
GC content 0.41
exon number 3
gene id LOC110501686
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 27776571 ~ 27817123 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaagaaagaaaaatgcttgaatgagtaggtggtctaaaacttttgaccggtagtgtatataagtGTCATAATGCATTACTCAATTAAAACCACTATGTAACTTCTATTCCATAAATGACTGGAAGGTCAGTAGGAATGACTGTGAATGAAAGTTACAGATTGCTGCTTTTAATTACATTTGTGCATAAGTGTAGAACTTTTTTTCATTTTGCAAGTCTCGTTCAAACATGGATACAACTTGATCAACTTATCCACTCTGATCAAGTTATAATGCAGTTTAATAATTAAACATTGCACGTGAGAGCCAGTAATGGCATGCAGAGGTTGAATACCAGGACATCGATTGCGAGGAGAGAATACGACTGCAATACCAGCTGACTGCATCCATTGAGGACCAGTGAGCCAACAAAGGTAAGCAGATTATGCCATTAAACTACTCCGTTATTAATTTAGCCTAATGGATCTACAGATGGTTTTGTAAAGATGTTTGAAGCTTGAATAggaaaatacagttttaaattGTTTATTGCattggtataaaaaaaaaatgtccatcATACTTCATAAATTGTTGTTCCAACTTGATGCCTGGAAATTAATAAATCCAAGCTTTACATTGATTTGAATGTTTTTTTGAGTGATTTTTGCATTTCTAGAGTGATCTAAGGCGGTTATGATCTTCTCATTTACAGACAATGGACATGATGAGCAAAAGGCATGCACTGTTGAACAGAAGAGTTTAAGTGGCAAAGAGAAGCATTTAAATGAGGAAAAGAAGAGTTTAAGTGATAATGAAGAGAGGCCTTTATGTGCAGCAGATAATCCTCGCCGCAGAGGAAATCCTCACCGTGAGAGGAGTCCTCTATACAAAGGGAATCATTTACACAAACAAGAGAATCCTTCACACGATGAAGAGAATCCTTCACGCAATGAAGAGAATACTTCATGTGATGTGGTGCAGACTTTATGTGACATGGAGAGAGCTTTATGTGACATAAAGAATTGTGCTGAAGAGAGCAGTTCAAGTGACGACGAGAACAGTTCAGGTGATGAGGTAGAAGGACAAAGACTGGATTCAAATGTCCCTAGTGGGTCAGATCCTCTTCCATCTAAAGCAGAAAGCTCCTGCGATAATAATGTGTCTGAGCAGTCCCTTCAAAAAACCTCACAAGCTAAAAAACCTTCCCGCAAAAAATGTGTGCCACGGAAAGGTACGAGGTCAAACTTACGTTCTAGCACAAAAATGACAGTCAGCACATGTAGTATGACAGATGATGGTAAAAGAAAATGGGACAAAAAGTACTTCTGCCTGTATTGCAATGAACCACACCACAAAATTGCAAGACATTTAGAAAGGATGCACGCAGAAGAAGCAGCTGTCGCTCATGCTATCAGCTTCCCCAAACTCTCCAAAATCAGGTCTCTCTTGCTTGACCAACTCCGTAACAAAGGCAACTATCTACACAACTTGGAAGTTCTTCAAAGTGGAGATGGAGAAATTGTCACAAAGAAAAGACCCTCTTACAATGGTGTTTCTGTGCGTGACTACCTGCCCTGCCAACACTGCTTAGCTTTTTTCAACAAAATAGATTTATGGAAGCATGAGGGCTCATGTAAAGCCAGAAAAGGACCAGATGAAAAGAGGGGAGGAAAAAGAGTGCGGGTCCAGGCTGCGTCCTCTCGACTTCTTCCATTGCCTGTCTACTCTACTGGAGGATGTGAAGAAATAATACACAATATGAATCAAGATGACATTCAATGCCACATCAAAAATGATCCCCTGATATGTAAATATGGCAATGCATTATCTGCAAAGCATGGCCATGCCAAGTCACAGTTTACTTATATTAGTTCAAAAATGAGAGAATTGGCTAGATTTGTACTTACTGTAAATGAGATGGACTGTGGTGTCCAATATCTGCATGAAGTATGTGTACCATCCAAATTTAAATTGGCTGTTCATGCTGCCAGGAAAATGAGTGGTCATGACCCTACCTCTGACAGGTACAAGACCCCATCTCTTGCTTTAAAGATTGGCTATTCCTTGAAAAGAGCTACTGAAATAGCTTTTGGGGAGAGTCGTATGACAGAGGACCGTGAGGCAGAGGCACAAGCCAAAAGATTCATTGAGCTGCTTGAAAACAATTGGAATAACTGTTTTTCCGGTCTGTCCCTGAGTGATGTCCCTCAGTGTGATGAAGTTGATGTGTCTTCACTAACTGAGGATTTGATTAAACTTCAGAAGTTTCTCAAGGTTGCAGAGGACACAGCAAAGAGAGAATTGCTCGAGAGCCCCACCAACGCTGCCTGGAAAAAGCTAAATGAAACTCTTCTTGCCGAAATAGCTCTCTTCAACAGAAAAAGGACAGGAGAGGTTGCGAAAATGCTGTTGGAAACGTACACAAACAGAAAGAAATCTCCAGCTAGTGCAGACATTTTCAATAGCCTCTCAAGGCTGGAACAGGAGCTTGGTGACGACAAACTAACCAGGGTGGAAATAGAAGGCAAAAATGGTAGAACAATGCCGGTCCTACTAACGGCAAGGATGATCTCATCTCTTGAGATCCTAATTGGAAACAGAGACAAAGTTGGTGTGTCAAAGGACAACCCTTATGTCTTTGCACGGAGCCCAGATGCAGCAAGCTACGTCAGAGGGTCTGACTGTTTGAGGAAATTTGCACGTGCGTGTGATGCAAAGAATCCTGAAAGTCTGATCCATGCTACAGTGAGGAAAGAGGTTGCTATCCATTGCCAAATTCTGAACTTAAATGAAAGTGAATTGGATCAGGTGGCAAAATTATTGGGACATGACACCCAGGTCCACAAAGAGTACTACAGACTGTCTGAAAACGCAGCACATCTAGCAGAAATCAGCAAATTGCTGCTTGCAATGGATCAGGTTCCAGTGGTAATTCCAGGGCCATCTGAGGAAAGGATTGTTTCACCTACATATGGGACATATCCAGCAGGGACAGATTCTGCAAGGACATATCCTTCTGGCACATATCCCACTGGGTCATCATATCCTACAGGGACATATTCAGCGAAGTCATATACTGTAGGGTCACAGCCTTTAAGGTCATATCATGCTGGGACATATCCTTCGAAGTCATATCCTTCAGGATCACATTCTCCGAGGTCATATTCTGCAGGGACAGATTCTGCGAGGGCATATCCTACCGGGATAAATCCTGCAAGTTCATATCCTACTGTGACACATCCTGCAGAGACCTATCGAGTAGCTTCATATGCTTCAGGGACATACCTAGCAGAGACGCATGATGCAAGGTCATGTACTGAAAAAACACAACTTGCAAATGCATGTCCTGCAAGTCCTTATGACCTCTCATCTCCTGCTAGATCATTTTCTTCAGGGATGAATCCTGTGAGGTCATATCCTGCTGGAACATATGCTGCGCAGACACTTCCAGCTCAAACACTTCCAGCACGTACAGTTATTATACCAACACTTCATGCGCAGACACTTCCTGCCCAGACGCTTCCAACACAGACACTTCCTGTCGGGGCAGTGCCTGCGGGTGCAGTTCCTGTGGGGACAGGTAAGTCGGGCACAGTATGGAAACAGAGGATGTGGAGTGATGCAGCTAAGGCTGCGGTGAACCGTCAGATGGGACACTTTATCTCAATGATGGAGGTTCCAGGTAAACGGGACTGTGAAGTTTGCCTGCACAATGAACCAGCTCTAAGAGACAGGACATGGAGGGACATCAAAAACTATGTGCACAACACAGTAAAATCTATAAAACGAAAGAATGGCCTTACAAGAGTGGACCCCACAAAACAGACAAAGAAAGGATTggcaaagaaagaaaaagaaacaatAGAGGCTAAGAGTGCTAAGGACTGGGTTGGTGGAACAATGACAGTACCTGAGGAGGGTCTAGAGTTAGGTCCTGTGGCAACACCAAGGAAACAGAAGATATGGAGTAATGAGGCTCAGGCTGCGGTCAGGCGGCAGCTAGGAGACTTCACTAAACTGATGAAGATTCCAGGTAAAAAGGAATGTGATGCATGTCTTGCAGCTGAACCAGCTCTGCAAGGCAGGACATGGAAAGATGTAAAAAACTATGTGCATAACACATTAAAGACTATGTGCAGGAGGCATAGTTCAGGCAAACAAAACATGGACCATGAGAAACCAAGTCCATATACACAGAATCCAGGGGTGCAACAGAATCCATGGGTGCATCAGAAATCAGGGGTGCCGTTGGGACTTCCAGAAGAGCCTCCTGTTTATCTGTCCTTGTGATTACCTTGAACTAGAACCTCCCAGGGTTCAAGGTAAGCAAGGATGGAGAAAGGAGAAAAGGATTGCTTTTTATTTAATCTGACCATCCTGGCTCACTCTGATCTCACTTTATGACATCAAGCAAGAATTAAGTAGAATTTTAACCATACCACTACCTACTTACTTCAATGAATAATCTGTAGCAACTACATAGTGACATTATGCATGAACTTGTTTAGTCGATAAGGGAATTTTCAGAACTTCTTTTAATTGTAAAATGTCCTTGGCACAGTGTAGTATGTGGCGCCAAAACTCAAAGTCCTTTGGTAAAGGTCTCACATTTGCAACCATGGCGAGAGGAGGCAAGTAAAGATGGACTCATACCTTTTTTTTAGTTTATTTAACAATTTCGATGGTCTTTTTATATAAAACTTGTCAAACTGAATCTTCTGGGTCAGCAACAGCAACAAGGCTCATGGACGCACTTTCGGAATCCAAACGCACCCCATGTTTCCGTAAGACCCATGTTGCATAAAAATGCCCAAGATAACTGACTGAAATATATGCTCCACATGCATAGATAACATGTACCAAGTACAGTGAATGTTTTGTTTTCTTCATAGAGGGAAAAAGTAGTGCAAACCTAGACAGTTAATCTGATGACCATACTTTTTTGATCACATTACTGTTATCTGTTACTTTCATCAAATGGATCTGGATCCAGATGTATAAAATCTTTGTGTATTCTTGCCTGTACCGTTGTATGTGTAGCTAATGTAATGTGTAGGTTAGGTTTTGAGTTAAAGCAACTGACCAGCATACCTGGGAATTTAGCAGGTTATTTTTAGTAGATGTGTGGTATGAACGGGTTTCATGGCTCCAGACTGACCATTTAGTCACATTTTGCAACCATTTGACTTGGCTGTgcaagaaaaaaaacatgatcGCGTCAGTGCGAGCTGCACATTCTACGTTGTCATCTCACTCAAACCTTCCTATTTTTGGGGGCAGCTAAAACCATGATTTGGTCAAACCGTAAAGAGCAatatcctcatgattcctgtaatgTAAACGTCTGTCCCTCTGCCTATTTCACTGGGGACTGCTGATGTGATGAGCAAACCGCTCTCCTCTCTGGGagaaaaatattgtttctcattctatagcatttcaaaatgcaattgcgATAACAGCATTGGAAGCAACTACTTTAGTGCCTGTCTGTAGGTATCATTTTTATTTCTCAATATTGAGCTCTGGAGCAACTTTTACAAACAAGCGATTTGATATGGCTTTGCGATACGGAGCGGTGCACAAAATTAACAtacttttttatttgatttaaccttttttaactgggcaagtcaagtcactcgggagcccagtattcagacaccttgactttttcccccattttgttacattacaaccttttTCTAAAGTGGATGAAATGAAACATTTTCCTCATAAATCAAtgtacaataccccataatgacaaagcaaaaacttttttagaaatgtttttaaatggaagggaaaaaaacaggaataccttatttacgtaactcgaaattgagctcaggtgcatcctgtttcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2055084 lncRNA downstream 97624 27683080 ~ 27688572 (-) True G1795708
TU2055083 lncRNA downstream 103758 27682175 ~ 27682438 (-) True G1795707
TU2055079 lncRNA downstream 110818 27675136 ~ 27675378 (-) True G1795703
TU2055065 lncRNA downstream 141169 27644823 ~ 27645027 (-) True G1795689
TU2055031 lncRNA downstream 175796 27610003 ~ 27610400 (-) True G1795660
TU2055105 lncRNA upstream 40782 27834422 ~ 27838560 (-) True acbp
TU2055147 lncRNA upstream 71003 27864643 ~ 27865088 (-) True G1795771
TU2055156 lncRNA upstream 137399 27931039 ~ 27935284 (-) True G1795777
TU2055254 lncRNA upstream 230098 28023738 ~ 28023937 (-) True G1795871
TU2055270 lncRNA upstream 250611 28044251 ~ 28044507 (-) True G1795885
XM_036959033.1 mRNA downstream 15488 27745675 ~ 27770708 (-) False LOC110501685
XM_021579417.2 mRNA downstream 15498 27741375 ~ 27770698 (-) False LOC110501685
XM_021579416.2 mRNA downstream 42118 27741375 ~ 27744078 (-) False LOC110501685
XM_036959030.1 mRNA downstream 45566 27706931 ~ 27740630 (-) True LOC110502082
XM_036959029.1 mRNA downstream 46367 27706931 ~ 27739829 (-) False LOC110502082
NM_001160694.2 mRNA upstream 40867 27834507 ~ 27838573 (-) False acbp
XM_036959036.1 mRNA upstream 109942 27903582 ~ 27912917 (-) False LOC110501689
XM_036959035.1 mRNA upstream 109942 27903582 ~ 27912919 (-) True LOC110501689
XM_036959037.1 mRNA upstream 215781 28009421 ~ 28018783 (-) False LOC110501691
XM_021579427.2 mRNA upstream 215781 28009421 ~ 28019116 (-) False LOC110501691
TU2055049 other downstream 42597 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other downstream 42597 27741372 ~ 27743599 (-) True LOC110501685
TU2054267 other downstream 500101 27268662 ~ 27286095 (-) True G1794978
TU2052534 other downstream 2074577 25710573 ~ 25711619 (-) True LOC110501627
TU2051516 other downstream 2799928 24985959 ~ 24986268 (-) True G1792433
TU2055231 other upstream 187024 27980664 ~ 27981379 (-) True G1795850
TU2055220 other upstream 216015 28009655 ~ 28012690 (-) True LOC110501691
TU2055631 other upstream 540584 28334224 ~ 28334621 (-) True G1796204
TU2055669 other upstream 641275 28434915 ~ 28438771 (-) False G1796239
TU2055842 other upstream 832498 28626138 ~ 28626891 (-) True G1796401

Expression Profile