RNA id: NM_001160694.2



Basic Information


Item Value
RNA id NM_001160694.2
length 830
RNA type mRNA
GC content 0.49
exon number 4
gene id acbp
representative False

Chromosome Information


Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 27834422 ~ 27838573 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ACACACATTAGGAACGGTCTACTCTCCTTTCCGTTAGTTCTGGGCTGTGGACGCCAGCAGTGTTCTGTGACTGTACTAAGGGCCTTCAAAAGGAATTGAAAACCATGTCTGAGGCAGAATTTGATAAGGCTGCAGAGGAGGTGAAGCAGCTGAAGGCCAAACCAGCAGATGCAGAGATGCTCAGGGTTTATGCTCTGTTCAAACAGGCCAAAGTGGGCGACGTCAACACCGCTCGTCCTGGGATGCTTGATTTCACTGGGAAAGCCAAGTGGGACGcctgggagaaggagaaagGAAAGAACCAAGAGGAAGCCAGGAAGGAGTACATTGCCTTGGTAGAGGAGCTTAAAGGGAAGTACGGAGTCTAAGAACCTACTGACTGGGTTCGACAGCTGGCAGTGTAGAACCATGACCTCTGTGGTCAGCCCACACCTCGTCCCTGTGAGATGCCTTAAATTCCAGTAGTATGCCATTTGCTACAAGACCTGGGGCAAATGCATATGTAAAATACTTTGTAATTCTAGAGGTGTGCTTGGTTTAGCGGAGTAGCTTGCGGGGTGATTTTAGTTGGCACTTTTTAGACTATTCAAATGGTACAAAACAAGAACTCAAGCCCACCTCATGTATTTTACATATGTGTTGGGCCCAGGTATGTTTGCGACTGCATTGCATGCGAACGCTGTATGCCTAGTGTGGACCACCTATGGTCAAGTTGAGAATACAGGACCGACAAGCCGCTGCTACGGACCGAGTCAAGCCGTCCTCCACCAGCAATTTCCTAGTGAACTGGTTGTACAGCCCAGGAACTCCATAAAGTCTACATTTGTTTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2055084 lncRNA downstream 145935 27683080 ~ 27688572 (-) True G1795708
TU2055083 lncRNA downstream 152069 27682175 ~ 27682438 (-) True G1795707
TU2055079 lncRNA downstream 159129 27675136 ~ 27675378 (-) True G1795703
TU2055065 lncRNA downstream 189480 27644823 ~ 27645027 (-) True G1795689
TU2055031 lncRNA downstream 224107 27610003 ~ 27610400 (-) True G1795660
TU2055147 lncRNA upstream 26070 27864643 ~ 27865088 (-) True G1795771
TU2055156 lncRNA upstream 92466 27931039 ~ 27935284 (-) True G1795777
TU2055254 lncRNA upstream 185165 28023738 ~ 28023937 (-) True G1795871
TU2055270 lncRNA upstream 205678 28044251 ~ 28044507 (-) True G1795885
TU2055283 lncRNA upstream 234302 28072875 ~ 28075589 (-) False G1795896
XM_021579422.2 mRNA downstream 17384 27776571 ~ 27817123 (-) False LOC110501686
XR_002470238.2 mRNA downstream 17384 27778697 ~ 27817123 (-) False LOC110501686
XM_021579418.2 mRNA downstream 17384 27786196 ~ 27817123 (-) False LOC110501686
XM_021579419.2 mRNA downstream 17384 27786196 ~ 27817123 (-) True LOC110501686
XM_021579420.2 mRNA downstream 40867 27786196 ~ 27793640 (-) False LOC110501686
XM_036959036.1 mRNA upstream 65009 27903582 ~ 27912917 (-) False LOC110501689
XM_036959035.1 mRNA upstream 65009 27903582 ~ 27912919 (-) True LOC110501689
XM_036959037.1 mRNA upstream 170848 28009421 ~ 28018783 (-) False LOC110501691
XM_021579427.2 mRNA upstream 170848 28009421 ~ 28019116 (-) False LOC110501691
LOC110502083 mRNA upstream 220320 28058893 ~ 28062683 (-) True LOC110502083
TU2055049 other downstream 90908 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other downstream 90908 27741372 ~ 27743599 (-) True LOC110501685
TU2054267 other downstream 548412 27268662 ~ 27286095 (-) True G1794978
TU2052534 other downstream 2122888 25710573 ~ 25711619 (-) True LOC110501627
TU2051516 other downstream 2848239 24985959 ~ 24986268 (-) True G1792433
TU2055231 other upstream 142091 27980664 ~ 27981379 (-) True G1795850
TU2055220 other upstream 171082 28009655 ~ 28012690 (-) True LOC110501691
TU2055631 other upstream 495651 28334224 ~ 28334621 (-) True G1796204
TU2055669 other upstream 596342 28434915 ~ 28438771 (-) False G1796239
TU2055842 other upstream 787565 28626138 ~ 28626891 (-) True G1796401

Expression Profile