RNA id: TU2055105


Basic Information

Item Value
RNA id TU2055105
length 902
lncRNA type sense_over
GC content 0.47
exon number 4
gene id acbp
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 27834422 ~ 27838573 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGGTCTACTCTCCTTTCCGTTAGTTCTGGGCTGTGGACGCCAGCAGTGTTCTGTGACTGTACTAAGGGCCTTCAAAAGGAATTGAAAACCATGTCTGAGGCAGAATTTGATAAGGCTGCAGAGGAGGTGAAGCAGCTGAAGGCCAAACCAGCAGATGCAGAGATGCTCAGGGTTTATGCTCTGTTCAAACAGGCCAAAGTGGGCGACGTCAACACCGCTCGTCCTGGGATGCTTGATTTCACTGGGAAAGCCAAGTGGGACGcctgggagaaggagaaagGAAAGAACCAAGAGGAAGCCAGGAAGGAGTACATTGCCTTGGTAGAGGAGCTTAAAGGGAAGTACGGAGTCTAAGAACCTACTGACTGGGTTCGACAGCTGGCAGTGTAGAACCATGACCTCTGTGGTCAGCCCACACCTCGTCCCTGTGAGATGCCTTAAATTCCAGTAGTATGCCATTTGCTACAAGACCTGGGGCAAATGCATATGTAAAATACTTTGTAATTCTAGAGGTGTGCTTGGTTTAGCGGAGTAGCTTGCGGGGTGATTTTAGTTGGCACTTTTTAGACTATTCAAATGGTACAAAACAAGAACTCAAGCCCACCTCATGTATTTTACATATGTGTTGGGCCCAGGTATGTTTGCGACTGCATTGCATGCGAACGCTGTATGCCTAGTGTGGACCACCTATGGTCAAGTTGAGAATACAGGACCGACAAGCCGCTGCTACGGACCGAGTCAAGCCGTCCTCCACCAGCAATTTCCTAGTGAACTGGTTGTACAGCCCAGGAACTCCATAAAGTCTACATTTGTTTTAACATTTCTGTTGTCATGCTTGGTTATTTCATGTGATGAGATCTTACTAACTTGTCTGACTCCGCACATTTAACTAAATGTGTAT

Function

GO:

id name namespace
GO:0000062 fatty-acyl-CoA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2055084 lncRNA downstream 145850 27683080 ~ 27688572 (-) True G1795708
TU2055083 lncRNA downstream 151984 27682175 ~ 27682438 (-) True G1795707
TU2055079 lncRNA downstream 159044 27675136 ~ 27675378 (-) True G1795703
TU2055065 lncRNA downstream 189395 27644823 ~ 27645027 (-) True G1795689
TU2055031 lncRNA downstream 224022 27610003 ~ 27610400 (-) True G1795660
TU2055147 lncRNA upstream 26083 27864643 ~ 27865088 (-) True G1795771
TU2055156 lncRNA upstream 92479 27931039 ~ 27935284 (-) True G1795777
TU2055254 lncRNA upstream 185178 28023738 ~ 28023937 (-) True G1795871
TU2055270 lncRNA upstream 205691 28044251 ~ 28044507 (-) True G1795885
TU2055283 lncRNA upstream 234315 28072875 ~ 28075589 (-) False G1795896
XM_021579422.2 mRNA downstream 17299 27776571 ~ 27817123 (-) False LOC110501686
XR_002470238.2 mRNA downstream 17299 27778697 ~ 27817123 (-) False LOC110501686
XM_021579418.2 mRNA downstream 17299 27786196 ~ 27817123 (-) False LOC110501686
XM_021579419.2 mRNA downstream 17299 27786196 ~ 27817123 (-) True LOC110501686
XM_021579420.2 mRNA downstream 40782 27786196 ~ 27793640 (-) False LOC110501686
XM_036959036.1 mRNA upstream 65022 27903582 ~ 27912917 (-) False LOC110501689
XM_036959035.1 mRNA upstream 65022 27903582 ~ 27912919 (-) True LOC110501689
XM_036959037.1 mRNA upstream 170861 28009421 ~ 28018783 (-) False LOC110501691
XM_021579427.2 mRNA upstream 170861 28009421 ~ 28019116 (-) False LOC110501691
LOC110502083 mRNA upstream 220333 28058893 ~ 28062683 (-) True LOC110502083
TU2055049 other downstream 90823 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other downstream 90823 27741372 ~ 27743599 (-) True LOC110501685
TU2054267 other downstream 548327 27268662 ~ 27286095 (-) True G1794978
TU2052534 other downstream 2122803 25710573 ~ 25711619 (-) True LOC110501627
TU2051516 other downstream 2848154 24985959 ~ 24986268 (-) True G1792433
TU2055231 other upstream 142104 27980664 ~ 27981379 (-) True G1795850
TU2055220 other upstream 171095 28009655 ~ 28012690 (-) True LOC110501691
TU2055631 other upstream 495664 28334224 ~ 28334621 (-) True G1796204
TU2055669 other upstream 596355 28434915 ~ 28438771 (-) False G1796239
TU2055842 other upstream 787578 28626138 ~ 28626891 (-) True G1796401

Expression Profile