RNA id: XM_021579423.2


Basic Information

Item Value
RNA id XM_021579423.2
length 1545
RNA type mRNA
GC content 0.49
exon number 2
gene id LOC110501688
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 27880850 ~ 27882900 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTTGCAGACTGGCAGAAATCGCTCGAATCTTTTTCTCTGTTCAGCTCGGAGATCCAGCGCGTGTCCAGCCATGCCAAAACGAATACTTCCCTGTCAATTTTGTGAAGTTCAGTGATACTGGCACACCGCTCCAAGGTGAACTACACTTAATTAAGGTTACAACATATttgttgtttttaatttttttctaACCCTGGAATAAAGTGATTCCTTTTTGGTGCACTCGCTTTTTCTGCAGAGAATTTTAGCGCACTCGCAACCTTTCACCATTGCTTCCCAAAGGAAAACGGACTTTTTAGCGCTTGTTTCTCGGACTCTCCAGAGGAAGCGTGTCGTTGCTCCTGTGGTTGGCATCGTCATGGTGTTAGCTCTTATTATAGCGATACCGCTTCTGGTCCAAGCGTCCAAGACAGACGCGCACTACGAGATGATGGGCACCTGTCGGATGATATGTGATCCATACAACCCCAAACCCAGCGCCAATGCTCTGGAAGTCATGCAGGACCTGAGCGTCATACCACCCCCGGCGTTCTCACATGGGACTAAAGGCGAGCCGGGTCGGCCGGGGAAACCCGGACCGAGAGGTCCACCCGGCGAACCGGGTCCACCAGGTCCAAGAGGACCGCCGGGGGATAGGGGGGACTCGGGGAAACCGGGCTATCCCGGGCATACCACTGGAGAGACGGCGGAGGGGACTGTGAGCAGTGACAGGACCGAAAATGCCGAGGGCCTAGAGTCCGCAATTGGCGGCACAAAAATTGCTTTTTACGTGGGTCTTAAAAACCCCCACGAGGGATACGAGGTGCTAAGGTTCGATGACGTGGTAACAAATCTAGGGAACCATTACGACCCTTCTACCGGCAAGTTCACGTGCCAAGTGTCCGGGATATACTACTTTACATACCATGTATTAATGCGCGGGGGCGACGGGACAAGCATGTGGGCAGATTTGTGCAGAAACGGACAGGTTCGCGCCAGTGCGATAGCCCAGGACGCAGACCAGAACTATGACTATGCCAGCAACAGTGTAGTGCTTCACCTAGACTCCGGGGACGAGATCTACATCAAGCTGGACGGAGGAAAGGCGCATGGGGGAAACAACAACAAGTACAGCACTTTTTCCGGTTTCATTTTGTATCCGGACTAAACCGCTTCCCAGACATGCAGGGATGTGAACTCTACTATCATTTATTAGACTCTATCATAACTAGAGCAAGTTGCCCATTGTCCGGGCGCCACTGTAAGCGGATGTGTGTCATCTGTTTGTATTTGGGGGGTTTGGGGCGCCAAGACTTGCCAACCGCTCAAATACAGACGACATTTCCGTGTGTTGTGATATTTTGTTGCTTGAACGTCTGTCTGTGTTTCCACTCAAGATATAGCCTTCTAAGATATTTATGTATCAAAAATAAGCAACAAACATCTAAATAAGGAGTAAGATGTCATATGTATTGGTCCACCAAGGACCGAATGTTACAACATGTTTTGTCTTAGTAGCTTATTCCATTACAGTAAGTATTTCAATAAATTATGTTTTCTATTA

Function

GO:

id name namespace
GO:0005581 collagen trimer cellular_component

KEGG:

id description
K23284 C1QL; C1q-related factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2054702 lncRNA upstream 45544 27834522 ~ 27835306 (+) False G1795358
TU2054703 lncRNA upstream 45544 27834522 ~ 27835306 (+) True G1795358
TU2054687 lncRNA upstream 54053 27799755 ~ 27826797 (+) True LOC110502120
TU2054698 lncRNA upstream 114791 27763426 ~ 27766059 (+) True G1795356
TU2054689 lncRNA upstream 127195 27751970 ~ 27753655 (+) True G1795348
TU2054767 lncRNA downstream 15467 27898367 ~ 27912875 (+) False G1795411
TU2054836 lncRNA downstream 97231 27980131 ~ 27980376 (+) True G1795476
TU2054846 lncRNA downstream 104518 27987418 ~ 27988471 (+) True G1795484
TU2054882 lncRNA downstream 160449 28043349 ~ 28043675 (+) True G1795519
TU2054907 lncRNA downstream 204482 28087382 ~ 28087586 (+) True G1795544
XR_002470298.2 mRNA upstream 53256 27820452 ~ 27827594 (+) False LOC110502120
trnaa-ugc-173 mRNA upstream 135489 27745286 ~ 27745361 (+) True trnaa-ugc-173
XM_021579411.2 mRNA upstream 184465 27688732 ~ 27696385 (+) False LOC110501682
XM_021579413.2 mRNA upstream 184465 27688732 ~ 27696385 (+) True LOC110501682
XM_036959028.1 mRNA upstream 192276 27685606 ~ 27688574 (+) False LOC110501683
XM_021579425.2 mRNA downstream 48052 27930952 ~ 27935316 (+) False LOC110501690
XM_021579426.2 mRNA downstream 48054 27930954 ~ 27935316 (+) True LOC110501690
XM_021579428.2 mRNA downstream 145562 28028462 ~ 28036764 (+) False ccdc93
XM_036959039.1 mRNA downstream 145562 28028462 ~ 28036764 (+) False ccdc93
XM_036959040.1 mRNA downstream 145562 28028462 ~ 28036764 (+) True ccdc93
TU2052918 other upstream 1564607 26315826 ~ 26316243 (+) True G1793717
TU2052189 other upstream 2149096 25731326 ~ 25731754 (+) True G1793045
TU2051751 other upstream 2584293 25294546 ~ 25296557 (+) True G1792649
TU2051116 other upstream 2867195 25007175 ~ 25013655 (+) True LOC110501609
TU2051120 other upstream 3031506 24848966 ~ 24849344 (+) False LOC110501609
TU2054765 other downstream 20682 27903582 ~ 27912875 (+) True G1795411
TU2054839 other downstream 154028 28036928 ~ 28038078 (+) True LOC110501693
TU2054913 other downstream 208665 28091565 ~ 28092116 (+) True G1795550
TU2056148 other downstream 1094990 28977890 ~ 28984226 (+) False LOC110502085
TU2055989 other downstream 1125724 29008624 ~ 29010273 (+) False LOC110501700

Expression Profile