RNA id: XM_036959035.1


Basic Information

Item Value
RNA id XM_036959035.1
length 1896
RNA type mRNA
GC content 0.50
exon number 14
gene id LOC110501689
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 27903582 ~ 27912919 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCTCATTTTTGCAACCTCAGCCCCAAATCAGATGACTTCCACTATGTGTCAAATGGGTGGGTTTTATGTTTTTTTACATAATGATGCGTTGTTATAAGAGGGTCTTGATGAGGATCTCAGGGGTGTTGTCTGTCACTTTGGAGTAACATGGAGACAtcagtagaaagaggagaggatcaCATCAGCTCGTTCTACCAGAGTAACCCACTGCTTGACTTGGACATGAAACTGAGCAGGACGGACATGTACACCTTCCAGAGCAGCGATCTAAAACCAGCCAAGGCCAGAGGAGCACAGCGATGTCTGAATGTTATTGCCGTTTACCTCGTCCTTCTGACTGCACTGAATATCTTCCTCCTTTACAAAGTCTTTTCGATGGAGTCTAGTTGTTTCTCCTCCTCTGGCTCCAGGACAACGATGCTGACCGACATCCACATCCCCCTGGGGATGAACCAGGAGGAGGACCTCCGTACACTGGCCAGAAACACCAGCCTGGAGTCCAACTCTCTCAGAGGAGACCTGGGGAGGTTACAGACCCAGGTCAGCAGCCTATGTGGAGAGGATGGACAGCTGGGCCAGCtgaggacagacctgggtgtggTCAATGCCAGCACCACTCTCCTTCAGGACACAGTGAAAACACTCAGATTCCTCAAAGCTTCACCAGGCCCACAGGGACCTATTGGTCCACCTGGTGCGAGGGGGGCAACTGGTgtgaggggggagaagggagacaCAGGTGAGACAGGACAAAAAGGAGACCCTGGAGTTGATGGCCAGACTGGTGCCAAGGGAAAACCAGGGGAACCAGGACCCAAAGGTGAAGATGGTGCCACTGGACCACAAGGACCAGCTGGTGCACCCGACAGTGCAGCCACTAATTGTTCAGGACCCCCTGGGCTGCCAGGACCACAGGGACCAAAGGGGGATATGGGACACATTGGTTTACCAGGGATATCAGGCCAGAACGGAACCAAAGGGGACACTGGAGTTCAGGGGCGTGATGGAGTAAAAGGGGCCCGTGGTCTGAAGGGTAACACAGGGCTGACAGGAGAGCCTGGACCCATAGGACCTGAAGGACCAAGAGGACCTGCTGGTGTTAATGGAACAAGAGGACTTGCtgGTCTTCCAGGGTTGCAGGGAAGTCCTGGAAGTCAAGGTCCACGTGGAGAAAAGGGTGAAAGAGCAGCTGGACCAGtgacaGTGAATGTGCGTATTGTTGGTGGAGGTGCTCGtgggagagtggaggtgatgTGGTTGGGGCAGTGGGGTACAGTGTGTGACGACAGCTTCGACACAGTGGATGGGACGGTGCTCTGCAAGACGCTGGGGTACCAAAGAGCCTCTGCAGTCTTCACGGCAAGCCCCGGAGTGGGTAAGATCTGGTTTGATGACCTGCGCTGCACAGGCACAGAGGCCAGTGTGTTTGACTGCCCCCACAACGGCATGGGCATCAACAATTGTCAACACAATGAGGACGCtggggtgcagtgtgtgtgagtgtgtcctgGATCCAAAAGAGAGACTCCTGGACTCCATCAAAAAGACTGGAGGAgagatgcatagagagagagagagacacacacacacacacacacacacacttgatgcATCTACTTTGTCTCATCTTATTAAAACAACATTTATAGGCATTTCAATAAACATGGCATTTAACTAACATGAAGCTAACTTATAATGATATAATAGTACCCTGGATGAAAGTTTATACAGAAAACAACATTTATAGGCATTTCAATAAACATGGCATTTAACTAACATGAAGCTAacttataataatataatagtaccCTGGATGAAAGTTTATACAGATAAAAACTGAATGGCATTTTGTAAACCAGTTTCATCAGTTTGAAGTAAAACAGTGAAAAATCAGA

Function

GO: NA

KEGG:

id description
K13884 MARCO; macrophage receptor with collagenous structure

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2055147 lncRNA downstream 38494 27864643 ~ 27865088 (-) True G1795771
TU2055105 lncRNA downstream 65022 27834422 ~ 27838560 (-) True acbp
TU2055084 lncRNA downstream 215010 27683080 ~ 27688572 (-) True G1795708
TU2055083 lncRNA downstream 221144 27682175 ~ 27682438 (-) True G1795707
TU2055079 lncRNA downstream 228204 27675136 ~ 27675378 (-) True G1795703
TU2055156 lncRNA upstream 18120 27931039 ~ 27935284 (-) True G1795777
TU2055254 lncRNA upstream 110819 28023738 ~ 28023937 (-) True G1795871
TU2055270 lncRNA upstream 131332 28044251 ~ 28044507 (-) True G1795885
TU2055283 lncRNA upstream 159956 28072875 ~ 28075589 (-) False G1795896
TU2055282 lncRNA upstream 161050 28073969 ~ 28075589 (-) True G1795896
NM_001160694.2 mRNA downstream 65009 27834507 ~ 27838573 (-) False acbp
XM_021579418.2 mRNA downstream 86459 27786196 ~ 27817123 (-) False LOC110501686
XM_021579419.2 mRNA downstream 86459 27786196 ~ 27817123 (-) True LOC110501686
XM_021579420.2 mRNA downstream 109942 27786196 ~ 27793640 (-) False LOC110501686
XM_021579421.2 mRNA downstream 109943 27786196 ~ 27793639 (-) False LOC110501686
XM_036959037.1 mRNA upstream 96502 28009421 ~ 28018783 (-) False LOC110501691
XM_021579427.2 mRNA upstream 96502 28009421 ~ 28019116 (-) False LOC110501691
LOC110502083 mRNA upstream 145974 28058893 ~ 28062683 (-) True LOC110502083
XM_036959043.1 mRNA upstream 625786 28538705 ~ 28542955 (-) False LOC110501696
XM_036959044.1 mRNA upstream 625786 28538705 ~ 28548565 (-) False LOC110501696
TU2055049 other downstream 159983 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other downstream 159983 27741372 ~ 27743599 (-) True LOC110501685
TU2054267 other downstream 617487 27268662 ~ 27286095 (-) True G1794978
TU2052534 other downstream 2191963 25710573 ~ 25711619 (-) True LOC110501627
TU2051516 other downstream 2917314 24985959 ~ 24986268 (-) True G1792433
TU2055231 other upstream 67745 27980664 ~ 27981379 (-) True G1795850
TU2055220 other upstream 96736 28009655 ~ 28012690 (-) True LOC110501691
TU2055631 other upstream 421305 28334224 ~ 28334621 (-) True G1796204
TU2055669 other upstream 521996 28434915 ~ 28438771 (-) False G1796239
TU2055842 other upstream 713219 28626138 ~ 28626891 (-) True G1796401

Expression Profile