RNA id: XM_021579427.2


Basic Information

Item Value
RNA id XM_021579427.2
length 2774
RNA type mRNA
GC content 0.43
exon number 7
gene id LOC110501691
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 28009421 ~ 28019116 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGACGCACGGGCAACGCACACAGTTGCTGTTAACATGATTTCAACTAAGTTTCTTATCTCCTTGAAAGTATCTCTGGTTTTAGGAGCTGATTGGTTTGGCACCTAGCCAGTGCCAAGCCGGTTCATCGGAAGTTAGCGAGAAGGTTAATTTCGAAGCTAGGTCTCAAACTCCTGCTAACTACATAAAAACATAACGTGGAATGTGTACTTTACAATTTTAGAAAATATACCTTTGAAACGTTGAAGGGTGTTGGTGATGTCAGTGGACCATACGATCACTTGAGGATAAAGTTAGCGTTTCCCTTTTCTCATCCTGTCCTGGCGTCCACGGCTGCTCCGGCCCTGGCAGCCATGGCCGACTCTACAGTGGTCAGCGACCAGCAGCCGCCCGTGTCCGGTCAGACTACTCCTTCCAGAGGACCGTACATCGCGGTGATCACAAACAGAAACACCAATCTGGGGATCCGTGGGTTCATGCTGTTCTCTATAGGAGTGTTCTTGGCTTTGGTGCTCAATCTGCTGCAGGTACAGAGGAACGTCACTCTGTTCCCCCCTGATGTCATCAGTAGCATATTCTCATCAGCCTGGTGGGTGCCGCCCTGCTGTGGAACCGCCTCGGCAATGATCGGTCTGTTGTATCCATGCATTGACAGTAGGCTCGGCGAGCCCCACAAGTTCAAGCGGGAGTGGTCCAGTGTGATGCGTTGTGTGGCCGTGTTCGTTGGCATCAACCATGCCAGCGCTAAAGTGGACTTTGCGAACAACGTGCAGCTGTCCCTGACGCTGGCGGCCCTGTCCATCGGCCTCTGGTGGACATTTGACCGGTCTCGCTCCGGCTTTGGCCTGGGGGTGGTCATCGCCCTGCTGGCCACTCTGTCCACTCAGCTCCTGGTCTACAACGGAGTCTTTCAGTATACCTCTCCAGATTTCCTGTACATTCGCTCCTGGTTGCCTTGCATCTTCTTCGCTGGTGTGATAACCATGGGGAACATAGGACGGCAGCTAGCCCTGTATGAATGCAAACGTATGTCAGGAAAGACTCATCAAGACTAAAAGAACTTCTGGCTATATCAAACTGTTGcacaaaatatttttaaaaattgcAACAAAAAGCCGAAAGGAGGATGTAAAAGGACATCTGTATGCAGCGTTGATGGGGATTGGTCAATCATGGTGGAGGCGGAGCAGTCATGCACAATTATGTGCTTCTGTTTTGCTGAGTGCTGTAGGACAAGACTGTTTCGATTGGTTGATTCCTTTGTGCCTCTTTAGGGCCGAGGTGGACGGACAACAGATAGCTTTATTATAAGCATTCAATGGCTGGCCTAATAAGAGGAATAACAAGAATTGccgatgttgtgtgtgtgtggtaggtaggCTCAATCTGCAACGCAATCTGTGATTGCAACTCAACAGGCACCAATATTAGTGTCACTCTGCTGCTGTTCAGGGCACCTCAGCACCAGTGGTGTGAAACCTTTGGCTCCATCGTGCCAAACAGACTTACACACAGGATTATCTGAATTATTTTCTTTATTCATCCATTCCTTATATCATTGATACATTAGTAGAATCTATATACATTTATTTCATGCTTTTAAAATGTAcaattatatacatacatatagtttttttttttttttgttacatgtGGATAATGTCTTTGCTGGCAGTTGAGAAGGGGTGAAGTGTTTATTGCTGCACTTATTTGTGACATCCTAGCGGGATATCAAGGCAACTGGCATACAGGGTCCAGTTGGTATTTCAAACAACCTTACCTACACCTGCTTTTCTACACCTGCCCATTTTGGGTCCATTCAATGTTCAATTGAAATTAAAATGACtgttttgtaaaaaataataataataaaatgctCATAGAAATTTATGGGCAAAatttcacttcctgaattgaaaaccGAATTGACCTAAACCCCGATCAGTTCAAGTCAGAGACCAGGCTAACTATTTCATTGTCCATCCAGCAGGTGCACACAAGAATCCACATCAGCAGTGGTTCTTGGGTCAGAGGTACTGCTGATAAGCTATTAGTGCTTATTGAGTTCGGTTTGATTATAAAAATATAAACCATCCAAGTTTTCGGTTTTGATTATTTTTCAACGTTAAATGCGTTGTGGGCTGAATGCTGTAAAACAGAATAAAACAGTAAAGGTCCCTTGGTGACTGTCCATTACTGCATATCACGTATTAACATCTCTTCACATTACTTTACAAAAATATTTCacttgtgtatattacatttgttttatttgatgacttttaTTTAATTCCAAGCATCATCTCATCTGTATAGAGCTgatgtctgacaaaatcactattttagtagttcattaaagtaaataaggcatacttttatgactgttgaataccaactatcagtcacttagatcatgtattttaaGGTAAAGATACCTCCCGAATCAACTGCTATCTATCCCTCTCAATCGCCATTCTCCCTCCGTGTCTGCCCCACACTAGCATAGCGGGGGTAAAATAAACACACAAACCTGACAAGTAGGTGTGGAATGGGTCATTGTTGTTAATTACCAAGTTTCTGCATTAATCTATGTAGAATATTTGCCTGTTGGAAACTATAACTCcttactacatcgcacagtttgGGCTTGATCTGATGTATCTCTAGAAAAACTGCACGTTGAGCACACAGACAATAATTGAACTGACTTCtgcattaaaaaaaatggaaCATTTGATTCGCTAAACGGATATAATAAAGTGTTACATTCCTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2055156 lncRNA downstream 74137 27931039 ~ 27935284 (-) True G1795777
TU2055147 lncRNA downstream 144333 27864643 ~ 27865088 (-) True G1795771
TU2055105 lncRNA downstream 170861 27834422 ~ 27838560 (-) True acbp
TU2055084 lncRNA downstream 320849 27683080 ~ 27688572 (-) True G1795708
TU2055083 lncRNA downstream 326983 27682175 ~ 27682438 (-) True G1795707
TU2055254 lncRNA upstream 4622 28023738 ~ 28023937 (-) True G1795871
TU2055270 lncRNA upstream 25135 28044251 ~ 28044507 (-) True G1795885
TU2055283 lncRNA upstream 53759 28072875 ~ 28075589 (-) False G1795896
TU2055282 lncRNA upstream 54853 28073969 ~ 28075589 (-) True G1795896
TU2055301 lncRNA upstream 76313 28095429 ~ 28095647 (-) True G1795914
XM_036959035.1 mRNA downstream 96502 27903582 ~ 27912919 (-) True LOC110501689
XM_036959036.1 mRNA downstream 96504 27903582 ~ 27912917 (-) False LOC110501689
NM_001160694.2 mRNA downstream 170848 27834507 ~ 27838573 (-) False acbp
XM_021579418.2 mRNA downstream 192298 27786196 ~ 27817123 (-) False LOC110501686
LOC110502083 mRNA upstream 39777 28058893 ~ 28062683 (-) True LOC110502083
XM_036959043.1 mRNA upstream 519589 28538705 ~ 28542955 (-) False LOC110501696
XM_036959044.1 mRNA upstream 519589 28538705 ~ 28548565 (-) False LOC110501696
XM_036959045.1 mRNA upstream 519589 28538705 ~ 28548565 (-) True LOC110501696
trnan-guu-200 mRNA upstream 700943 28720059 ~ 28720132 (-) False trnan-guu-200
TU2055231 other downstream 28042 27980664 ~ 27981379 (-) True G1795850
TU2055049 other downstream 265822 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other downstream 265822 27741372 ~ 27743599 (-) True LOC110501685
TU2054267 other downstream 723326 27268662 ~ 27286095 (-) True G1794978
TU2052534 other downstream 2297802 25710573 ~ 25711619 (-) True LOC110501627
TU2055631 other upstream 315108 28334224 ~ 28334621 (-) True G1796204
TU2055669 other upstream 415799 28434915 ~ 28438771 (-) False G1796239
TU2055842 other upstream 607022 28626138 ~ 28626891 (-) True G1796401
TU2056199 other upstream 807171 28826287 ~ 28826645 (-) True LOC110501699
TU2056693 other upstream 1192548 29211664 ~ 29243649 (-) False G1797146

Expression Profile