RNA id: TU2055220


Basic Information

Item Value
RNA id TU2055220
length 1958
RNA type TUCP
GC content 0.40
exon number 3
gene id LOC110501691
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 28009421 ~ 28019116 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAGTGCATAAAACAAAGGATGTGTAAAACAATAAGATTACCAAAAAGGTGTGTTTTTAAATGTGATATTCTGTTTACAAGAAAGCACCTTACTCTGAGTAGAAACCATAGTTCCTGTGTGGACTATCCTACTACAAGCTCAGCTGTCCTTAACCCCTCTCAGAAAGTGGACTTTGCGAACAACGTGCAGCTGTCCCTGACGCTGGCGGCCCTGTCCATCGGCCTCTGGTGGACATTTGACCGGTCTCGCTCCGGCTTTGGCCTGGGGGTGGTCATCGCCCTGCTGGCCACTCTGTCCACTCAGCTCCTGGTCTACAACGGAGTCTTTCAGTATACCTCTCCAGATTTCCTGTACATTCGCTCCTGGTTGCCTTGCATCTTCTTCGCTGGTGTGATAACCATGGGGAACATAGGACGGCAGCTAGCCCTGTATGAATGCAAACGTATGTCAGGAAAGACTCATCAAGACTAAAAGAACTTCTGGCTATATCAAACTGTTGcacaaaatatttttaaaaattgcAACAAAAAGCCGAAAGGAGGATGTAAAAGGACATCTGTATGCAGCGTTGATGGGGATTGGTCAATCATGGTGGAGGCGGAGCAGTCATGCACAATTATGTGCTTCTGTTTTGCTGAGTGCTGTAGGACAAGACTGTTTCGATTGGTTGATTCCTTTGTGCCTCTTTAGGGCCGAGGTGGACGGACAACAGATAGCTTTATTATAAGCATTCAATGGCTGGCCTAATAAGAGGAATAACAAGAATTGccgatgttgtgtgtgtgtggtaggtaggCTCAATCTGCAACGCAATCTGTGATTGCAACTCAACAGGCACCAATATTAGTGTCACTCTGCTGCTGTTCAGGGCACCTCAGCACCAGTGGTGTGAAACCTTTGGCTCCATCGTGCCAAACAGACTTACACACAGGATTATCTGAATTATTTTCTTTATTCATCCATTCCTTATATCATTGATACATTAGTAGAATCTATATACATTTATTTCATGCTTTTAAAATGTAcaattatatacatacatatagtttttttttttttttgttacatgtGGATAATGTCTTTGCTGGCAGTTGAGAAGGGGTGAAGTGTTTATTGCTGCACTTATTTGTGACATCCTAGCGGGATATCAAGGCAACTGGCATACAGGGTCCAGTTGGTATTTCAAACAACCTTACCTACACCTGCTTTTCTACACCTGCCCATTTTGGGTCCATTCAATGTTCAATTGAAATTAAAATGACtgttttgtaaaaaataataataataaaatgctCATAGAAATTTATGGGCAAAatttcacttcctgaattgaaaaccGAATTGACCTAAACCCCGATCAGTTCAAGTCAGAGACCAGGCTAACTATTTCATTGTCCATCCAGCAGGTGCACACAAGAATCCACATCAGCAGTGGTTCTTGGGTCAGAGGTACTGCTGATAAGCTATTAGTGCTTATTGAGTTCGGTTTGATTATAAAAATATAAACCATCCAAGTTTTCGGTTTTGATTATTTTTCAACGTTAAATGCGTTGTGGGCTGAATGCTGTAAAACAGAATAAAACAGTAAAGGTCCCTTGGTGACTGTCCATTACTGCATATCACGTATTAACATCTCTTCACATTACTTTACAAAAATATTTCacttgtgtatattacatttgttttatttgatgacttttaTTTAATTCCAAGCATCATCTCATCTGTATAGAGCTgatgtctgacaaaatcactattttagtagttcattaaagtaaataaggcatacttttatgactgttgaataccaactatcagtcacttagatcatgtattttaaGGTAAAGATACCTCCCGAATCAACTGCTATCTATCCCTCTCAATCGCCATTCTCCCTCCGTGTCTGCCCCACACTAGCATAGCGGGGGTAAAATAAACACACAAACCTGACAAGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2055156 lncRNA downstream 74371 27931039 ~ 27935284 (-) True G1795777
TU2055147 lncRNA downstream 144567 27864643 ~ 27865088 (-) True G1795771
TU2055105 lncRNA downstream 171095 27834422 ~ 27838560 (-) True acbp
TU2055084 lncRNA downstream 321083 27683080 ~ 27688572 (-) True G1795708
TU2055083 lncRNA downstream 327217 27682175 ~ 27682438 (-) True G1795707
TU2055254 lncRNA upstream 11048 28023738 ~ 28023937 (-) True G1795871
TU2055270 lncRNA upstream 31561 28044251 ~ 28044507 (-) True G1795885
TU2055283 lncRNA upstream 60185 28072875 ~ 28075589 (-) False G1795896
TU2055282 lncRNA upstream 61279 28073969 ~ 28075589 (-) True G1795896
TU2055301 lncRNA upstream 82739 28095429 ~ 28095647 (-) True G1795914
XM_036959035.1 mRNA downstream 96736 27903582 ~ 27912919 (-) True LOC110501689
XM_036959036.1 mRNA downstream 96738 27903582 ~ 27912917 (-) False LOC110501689
NM_001160694.2 mRNA downstream 171082 27834507 ~ 27838573 (-) False acbp
XM_021579418.2 mRNA downstream 192532 27786196 ~ 27817123 (-) False LOC110501686
LOC110502083 mRNA upstream 46203 28058893 ~ 28062683 (-) True LOC110502083
XM_036959043.1 mRNA upstream 526015 28538705 ~ 28542955 (-) False LOC110501696
XM_036959044.1 mRNA upstream 526015 28538705 ~ 28548565 (-) False LOC110501696
XM_036959045.1 mRNA upstream 526015 28538705 ~ 28548565 (-) True LOC110501696
trnan-guu-200 mRNA upstream 707369 28720059 ~ 28720132 (-) False trnan-guu-200
TU2055231 other downstream 28276 27980664 ~ 27981379 (-) True G1795850
TU2055049 other downstream 266056 27741372 ~ 27743599 (-) False LOC110501685
TU2055050 other downstream 266056 27741372 ~ 27743599 (-) True LOC110501685
TU2054267 other downstream 723560 27268662 ~ 27286095 (-) True G1794978
TU2052534 other downstream 2298036 25710573 ~ 25711619 (-) True LOC110501627
TU2055631 other upstream 321534 28334224 ~ 28334621 (-) True G1796204
TU2055669 other upstream 422225 28434915 ~ 28438771 (-) False G1796239
TU2055842 other upstream 613448 28626138 ~ 28626891 (-) True G1796401
TU2056199 other upstream 813597 28826287 ~ 28826645 (-) True LOC110501699
TU2056693 other upstream 1198974 29211664 ~ 29243649 (-) False G1797146

Expression Profile