RNA id: XM_036959043.1


Basic Information

Item Value
RNA id XM_036959043.1
length 3614
RNA type mRNA
GC content 0.43
exon number 5
gene id LOC110501696
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 28538705 ~ 28548565 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acagttttagaaacttctgagtgttttctatccaatactaataataatatgcatattgtGAAGCTGAGTAGGCGGCAGTtaactctgggcacgctattcgtccaaagtgaaaatgctgccccctatcccaaatacGTTTTTTAAACATAGTGGCGGGTCAATTTTGACCCTAAAGACAACACAAAGGTTAAAATAACAAAGACAATAAAtgtttttgtcaagttccttaaatgtgctgtgAATGTTCCTAAGTCAAGCAAGTATCCTGCACCAATCCCAGAATGTTGTGGGAAGGCTGTATGCTAAATAAGCATAGGATAACCATGCTCTCACAAAGCCCTAAGAAACATAGTTcccagaacgttatgtgctagctgggggtACTCCAAACTATCCAGACACTGCATTAGAAATTAGGAAATGCGGTATATATACGCTTCAGAATAAACTTATGAAGCCTACAAACTGTTATAATAATCAACATGTTCTGCtgtctagctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttaaaaggtCACTTCTCTGAGCGCTCTCATTATATCGTTATGTCAGGGAGATGTACTAGTGAAGGGAAATGGCTTGCAgcaaaaacataaacaagagaACTTCTCATGGGAAGAAAAGCTGAAGTAGATTCACTGGTGCTGCAGATAAACGTTGtgctcatccatctctccctgccATCCTAAGCCACAAACACTACTTGTAGCTTAGTGGACCAAAGGGCTTAAGGAATTTCTCAGGAATGTTCTTGTCTATGCATTATTAACTATAGAAGAGCTTCTCAGCTAGTACATAACATTCTGACAAAATACTTTATTTATTGGTATTTCATTACATTAACAGAAAGTTTCCTAAAAATTCAAACATTGTTACATTTAATAACAATTTTGGGAACGCTCTCAggctggtttgacattgggaatgttctcaaatagttcagagaacattAGGAAACAGTGTTCTTCTATGGGAATTTCAGCATTTCAGCATAAcctttcctacaggtttcctcttGGTTCTATCAACTTGTTCCAAGAACATTAATAAACCTTCCATCAAAACCACAATAAAACTTTAGTAACTTTCAGATAACATTCTAACATGTAGGCCAATTTTCTATTCTCAGCATCagcaaaactctctctatcctcgaTCCTGTTAAGTATGTTCAGGGGAGTTGGGCGCGCCCACTAGTTTGCCACACCTGACCTTAATAAGtgtttgtttcctttgaaatggggtctgtttgaatagactaaaacgAACAGCTTTGTATGCTTAAAAAAACATGGTATgatagctccatcctggtggcatAGGAGACGTATTCCATGGATAAAAACAGAAGGTTAAAAACATGGTATgatagctccatcctggtggcatAGGAGACTTATTCCATGGATAAAAACAGAAGGTTAAAAACATGGTATgatagctccatcctggtggcatAGTAGACTTATTCCATGGATAAAAACAGAAGGTTAAAAACATGGTATgatagctccatcctggtggcatAGGAGACTTATTCCATGGATAAAAACAGAAGGTTAAAGGTTGGAATCTCACTGATGCTGTGTCTTGtcacaaaaaaaactaaatgttTGCGTGATAAATGGCTAAGGAAAtacatttccatgtgtcctatctgtgcttcaATAAAGTTAACCCCAAATAAGCTAACAGTGGTTTTgaaagttttaaggaagttatAAAAAAATGTCTAAATAACCTCAGGGCATTAATAAAACctaagacgttctcagaacctccctgcaacctaaaaataagCATTCCCTGTGGATGCAACATTTTCACTTCTTTTCTCATAATGTTTAAAAAACGTTACATTTTACTGTTCAGGAAACTTATGGATTtgttcccacaaccaatgtgaaaccaaaaacatacgttcccacaacttccaagaaACCAAATGTGTTAGCGGGGTTGCGATGCTATAAACAAACAAAGTGAAGATAGACGCGATTCCAATTCAAAGTGGACACACCAATGTAAATATTTACCTCATACAATCTTGAGTTCCTCATTGTAATGATGATTAATTGGGATGAACAAGAAAGGAAAGGTCACCTGGTAAAAAGTGTTGACTGAAACGGCTTTGTTCAAAACAGTGTTTTGGTCTTCTCTTTAGGCATACCcataaacagtgcattcggaaagtattcagaccccttgactttttccatattttgctacgttacagccttgttctaaaatgtttaGGCTCTGTTCTGTGGTGCTAACTTTACCAAAAGGCCTCAACTGACAGGTTCTGCTATCCTCCTGAGGGAACTCCACTCTGACCATGAGGGACCGTCTGGAGGAGCTGCGTCAGAGGGCCCAGGAGTTCCGGGAGGCAAGAAACAAGGCAGATGAAACCCCATTCCCTGAGGAAGACGCTGACCCAGATGACCCAGTGTGGGTTAGTGTCGCCACCCCGCAGCAGGCTGTGGTGTTTGAGGAGGAACCAGTCCTGGACAACTTCCTGTCCGAGGCTCAGCATATCCGCGGTGACATCACTGAGCTCGAAACCGAGGTGAAGAAGTTTAGCCAGCATCAAAGGAGCCTGGTGGCAGCCATGCGTCGTTTCAGTGTGATGAAGAAGGAGAGCAGTGTAACGACGGACATCAAGCTGCAGGCAGAGAGCATCCACAGACGGCTGGACGCCCTCTTCAAGAAGGCACAGAGTTTAGAAGGCCTGCAGGGACTGGCTACAGCCACTACACGCATCCAACGCTCCCAACACGCAGCGCTACACAGACAATTCCAGCAGGTAATGCGTTTGTACAACGACTCCATTCTCAATAAACAGGAGCGGTGTAAACACTTCATCATCCGTCAGCTGGAGGTGTCTGGTCGCGACGTCACCGAGGAGGAAGTGGACCAAATGGTTTCTGCGGGGAAGTGGGAGGTGTTTAACCAGAACCTCCTCCACAATGAACGCATCACACGCTCTAAGCTGTCTGAGATCGAGCAGAGACACAAGGAGCTGGTGAATCTGGAGAGCAACATGAAAGAGCTGAGAGATCTGTTCATGGATGTCTTTATTTTGGTGGAGGAGCAGGGAGACTACATAGACCACATCCAGACCAGCGTAGAGAAGACACAGGACTATGTCACCGTCAGTAACGAGAAGTTTAAAATGGCTGCCAGGTACAAGAAAAATAACCCTTTGAGGAGGctgtgctgctgttgctgccccTGGAGGTGATGCACAtagaggagagactggagactggagatGCCCCTGGAGGTTTTTcagatggggagaggaagagttCTGGAGAGTCTGCAGGTGGCATTTCACTTATAAGAATCTTCAGAGGAGaccgcgtgaatcaggccttcgtagtcgaattgctgcaaagaaaacactactaaagaacaccaatgaGAATGAGAGAcctgcttgtgccaagaaacacgagcaatggacattagaccggtagcaatctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2055737 lncRNA downstream 1201 28537079 ~ 28537504 (-) True G1796297
TU2055704 lncRNA downstream 26948 28511294 ~ 28511757 (-) True G1796264
TU2055672 lncRNA downstream 86890 28450076 ~ 28451815 (-) True G1796239
TU2055653 lncRNA downstream 138434 28394836 ~ 28400271 (-) True G1796224
TU2055601 lncRNA downstream 290257 28248127 ~ 28248448 (-) True G1796176
TU2055743 lncRNA upstream 8910 28551865 ~ 28552108 (-) True G1796302
TU2055769 lncRNA upstream 22370 28565325 ~ 28584782 (-) True G1796328
TU2055804 lncRNA upstream 54535 28597490 ~ 28597697 (-) True G1796363
TU2055817 lncRNA upstream 63349 28606304 ~ 28607422 (-) True G1796376
TU2055818 lncRNA upstream 64938 28607893 ~ 28608240 (-) True G1796377
LOC110502083 mRNA downstream 476022 28058893 ~ 28062683 (-) True LOC110502083
XM_021579427.2 mRNA downstream 519589 28009421 ~ 28019116 (-) False LOC110501691
XM_036959037.1 mRNA downstream 519922 28009421 ~ 28018783 (-) False LOC110501691
XM_036959035.1 mRNA downstream 625786 27903582 ~ 27912919 (-) True LOC110501689
XM_036959036.1 mRNA downstream 625788 27903582 ~ 27912917 (-) False LOC110501689
trnan-guu-200 mRNA upstream 177104 28720059 ~ 28720132 (-) False trnan-guu-200
XR_005038812.1 mRNA upstream 276375 28819330 ~ 28826708 (-) False LOC110501699
XR_005038814.1 mRNA upstream 781190 29324145 ~ 29325269 (-) True LOC118943585
XM_021579450.2 mRNA upstream 890597 29433552 ~ 29441063 (-) False LOC110501708
XM_021579449.2 mRNA upstream 890597 29433552 ~ 29441071 (-) False LOC110501708
TU2055669 other downstream 99934 28434915 ~ 28438771 (-) False G1796239
TU2055631 other downstream 204084 28334224 ~ 28334621 (-) True G1796204
TU2055220 other downstream 526015 28009655 ~ 28012690 (-) True LOC110501691
TU2055231 other downstream 557326 27980664 ~ 27981379 (-) True G1795850
TU2055049 other downstream 795106 27741372 ~ 27743599 (-) False LOC110501685
TU2055842 other upstream 83183 28626138 ~ 28626891 (-) True G1796401
TU2056199 other upstream 283332 28826287 ~ 28826645 (-) True LOC110501699
TU2056693 other upstream 668709 29211664 ~ 29243649 (-) False G1797146
TU2056696 other upstream 668709 29211664 ~ 29243649 (-) True G1797146
TU2057122 other upstream 1116512 29659467 ~ 29660947 (-) True G1797556

Expression Profile