RNA id: XR_005038812.1


Basic Information

Item Value
RNA id XR_005038812.1
length 3561
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC110501699
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 28819330 ~ 28826708 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAAATAAATGTATGGTGTTCATACCAGTCAGTCTGATTACTCTTAGCATTACGATTGCCATTCTAATTGTAGGTTGTTGTTTTAATGTTTGTCACAGCTTTCCTGACATTTGAGATCCCACTTACTAGTTTATCAGAGACAAAGCTGTATGATGGGTCTGGAACTGAAGTTGATGGGGATGTGTTTGAGGAGGTGGTGACACGGCCAGATTTAGGTGTTTTCAAGCTCACACTGAACAATGATGCTAAAGTTATGTGCTGGTTATCAAGTCGTGGTTATTTGTGGCATCACTTTCAATATAACCATACATTTGACATGTCTGTGTTGTTATTGTGTATTTCAGAATCTTCCCTGGTGAGTCCTGTCTCTGCCAGTTCTGTGATGGGTGGTTCAGACCATGAGTCGGATGATACAATTATTTTGAGCGAGGATGGAAGCCCCTCACGAAAGCATCAAAGATCTGATGACGAAGCAAAAAAAGGTAAGTTGGTAATTCATTCTTCAATTCTTCTTGCCACCAAATTGATTTGTCACtgctgtttttttgtgtttttttttttacatactgaAGAAAAAAACCTGGTGGAGGTTGTCATCAAGGAATACTCCAAAGCTAAAAGCCTGACTGACTGCACCAGACGAAAGATGATCAACATTCTGGTTTCGGCGATGACAGAGACTCATGGGACATCAACACCACGCAGTGTGAGAGAAACGTTTGCACAAGGCATCGTCTCCTTGTTCCCATAACCTGAAGGATCCCTACAACACAAATGGATATATTGAACATAATTTTGTGCTGCTGTTTGGAGAGGGAATATCAGCCAGGTCTTTGGAGTGGTGGCCAACTACATTCAAGCAAAATATCATCATGCTAAGCAAGACCCTAAGCAAGACCCCTGATTGAGCTGAACTTCAGGAGCTGATCCAGATGGAAGAATCTGCAGTTAATGAGGGAGCTGACACAAATGCTGACGGATGGGACGGTGACCtttcctccatccttctcctgcTCCATTTGATTCCTTCATCACAAGGCTGCAAAAGACCAGGCAAGATGTCCGCATCCCAAGCTGAACAGCATCTTGTGATATTCTAAAAGGCAGGAACCAGTATCCAGGAGCATCTTTATGCGATTGACCAGAGCCGCCAACCATATCTTCTTGCAGTCAGGACCAGGAGGAGCAGCATCCATGCTTACTTCATCATCCTGGACAAACGGGACTTGCCGTGCAAGTCAAAGAGGGCTCTTGGTGCCTTTGATGAGCTTTTCAAGACTCACTTTGTTTTTGGTACTGCAATGTTGTGCAACATGTACACCTTCATACAGACAACTGTGTACATCATAGACATTGGTGAGGTTAAGGAGACTCCAAGGGTTGCTGAGCTCAGAGCTAGACTCCTGCACTAATGCCGATTAAGTTATGATGATATGTTTTGTTTGCCAAGCTAGTCATGGAAGTACCAACTTGCTCGTGAGGCATCTCAAGTTGATGCATGGAATGTTCCCTGGTAGAACTCTTAGACTAAAATGTGGTCAAGCAGATTGTTGTGTATATGGTACATTTTCAGGCTTTAGGAAGCATTTGAACAGGGCACATTCCGGAGACTGTCAAATTTTGTTAAACGCTAAGTTGGATGCTAATACAGACAGTTGATAATCAGCCAAGAAATGCTGATTTTCCTTCAAATTCTAGTTGtaatcatgttacacaatatctAACAAGAACACACTTGATATGTGTGCATCTGCTATTGCACAACTGCTGGCTGGCTGCAAGTGTAGGTCAGACGACTTTAAATAGTTGTGTATCTTCCATGGAAGAAGCAGATACAGGGTCAAGCTAAAGTGACCGCTCGTCCTTGTATATCTTCAAAGACACAGAAACTGTCACAAATCCAACATTCTTTTCAGGATATTGAAAATCATTTCACATTGTTGGTATACATTAACTGTTTGGTTTTGTGGAATCATTTTGTGCTCGTTATTGTTGCCGTTTTTGCCTCACTGAAAAAGTAGACTTTCAAACTGTTCTTTGAGGATGACCCAAGAGTGACTTTACGAACAAAACACGCACTCAGACCATTGTCAAACTATTCAGTCAAACCCAACACTACCTCATATGTACGCTGTGAAGCATACTTGCTTATTGAACTCTGCAGTACTTCAATACTACAGACTATTTTTCTGTTGATATAATGCATGACATTTTAGAAGGAGTTGCACAATGAGGTAAAACTTGTTATAGTATTTACAAGCCAACTTTGACTGCTAAAGATGTGTACGGTAGAGTTCCTTCATATAGCTATGGCTACACAGAGAGGAGGAATCGTCCACCTGCACTCAAATTGGATCATGGGAGCAATGATTTGGGTCTAAATGCTATTCAGTCTTGGTGTCTTCGTAATTTGACATTGATATTTGGTGATCTTGTACAGAAAGATGATAAATACTGGCTaactctgttactactactattgtGTTTTCTCCTATACTAACAGAGGGCATGACCATCTATCTGAAGCACTTAATTGCTGAACATCATAGGCTTTTCAATTATTTGTTTCCTGATAGAAATCTGTTACCGAAACACCACTTCATGATACATTATCCTTGTTGTATAAGGAATATTGGGCCCATTCTTCCCTCATGGTGTAAATGTGCTACGAAGCAAAAACAATTTCTTTAAAAAGCAACTGAAGAGTTTTAAGAATGTCACTATGAACTTAGCCAAGAAACACAAATGACATGGCATATAACTGAGAAACCTTCAGCCAGGATGGACAAGCTATCAGCCAGGATGGACTAGCTATAGGTCCAGGATGGACTAGCTATAGGTCCAGGATGGACTAGCTATAGGTCCAGGATGGACTAGCTATAGGTCCAGGATGGACTAGCTATAGGTCCAGGATGGACTAGCTATAGGTCCAGGAAGGATGTCAAGGCTCAATGACCTGAAAGAAGGCCATGAGATGCTGCCAAGTTGAATGTCTCAGTGcacacaaatgttttgtcagtTAAATGGGTAAAGCACCATGGTACAGAATATCGCCTTGATTTGGCCATATGTGGTGAAGTAGTCATTGAAATGCAGGTATTTTACTAAATGAAGGCTATTGTTTTGAAagagaaatgttttgttgtttgggTCAGGTCTTGAAACCTTATGTTTTGATCATTTGCATGCATTTAAAGTTGTTTTGAAGCAAAGTCCACCATGCAAGGTATTTCATGTACCACAAACCTTTTGATTTCCTCATGTCATATGGAGCAAAGGATTTTTTTTGACTACATTGTCCCCTACTGTCACTTGATAACAGTTTAAGCCAGGTCTGAGACTTATGGTTTGGTTGTGAGAAACAAATTTGTTTTAATGTGAAAGTCAGTATTTTCCAACAAACCTTTTGATTTGCTCATGTCATATGGAGCAAGGGATTCTTTTGACTACATTCTACTGTCACTTGATAACAGTGTAAGGCAGGGCTGAGACTTGTGGTTTGGTCATAATAAACATATTTGAATGTTGAAACAGCTTTGCTTGAGCTTTGCTCCTCACCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2056183 lncRNA downstream 23015 28796110 ~ 28796315 (-) True G1796699
TU2056179 lncRNA downstream 26726 28792392 ~ 28792604 (-) True G1796695
TU2056164 lncRNA downstream 63073 28756008 ~ 28756257 (-) True G1796687
TU2055987 lncRNA downstream 63939 28755142 ~ 28755391 (-) True G1796546
TU2055957 lncRNA downstream 85382 28733708 ~ 28733948 (-) True G1796516
TU2056221 lncRNA upstream 33109 28859817 ~ 28860023 (-) True G1796736
TU2056223 lncRNA upstream 37411 28864119 ~ 28864548 (-) True G1796738
TU2056224 lncRNA upstream 38291 28864999 ~ 28865208 (-) True G1796739
TU2056226 lncRNA upstream 44876 28871584 ~ 28871918 (-) True G1796741
TU2056228 lncRNA upstream 45887 28872595 ~ 28872805 (-) True G1796743
trnan-guu-200 mRNA downstream 99198 28720059 ~ 28720132 (-) False trnan-guu-200
XM_036959044.1 mRNA downstream 270765 28538705 ~ 28548565 (-) False LOC110501696
XM_036959045.1 mRNA downstream 270765 28538705 ~ 28548565 (-) True LOC110501696
XM_036959043.1 mRNA downstream 276375 28538705 ~ 28542955 (-) False LOC110501696
LOC110502083 mRNA downstream 756647 28058893 ~ 28062683 (-) True LOC110502083
XR_005038814.1 mRNA upstream 497437 29324145 ~ 29325269 (-) True LOC118943585
XM_021579450.2 mRNA upstream 606844 29433552 ~ 29441063 (-) False LOC110501708
XM_021579449.2 mRNA upstream 606844 29433552 ~ 29441071 (-) False LOC110501708
XM_021579452.2 mRNA upstream 779355 29606063 ~ 29619908 (-) True dnajc15
XM_021579453.2 mRNA upstream 880104 29706812 ~ 29727741 (-) True tnfsf11
TU2055842 other downstream 192439 28626138 ~ 28626891 (-) True G1796401
TU2055669 other downstream 380559 28434915 ~ 28438771 (-) False G1796239
TU2055631 other downstream 484709 28334224 ~ 28334621 (-) True G1796204
TU2055220 other downstream 806640 28009655 ~ 28012690 (-) True LOC110501691
TU2055231 other downstream 837951 27980664 ~ 27981379 (-) True G1795850
TU2056693 other upstream 384956 29211664 ~ 29243649 (-) False G1797146
TU2056696 other upstream 384956 29211664 ~ 29243649 (-) True G1797146
TU2057122 other upstream 832759 29659467 ~ 29660947 (-) True G1797556
TU2057451 other upstream 1011569 29838277 ~ 29843180 (-) True LOC110501714
TU2057553 other upstream 1144850 29971558 ~ 29978535 (-) True G1797936

Expression Profile