RNA id: TU2056199



Basic Information


Item Value
RNA id TU2056199
length 359
RNA type TUCP
GC content 0.41
exon number 1
gene id LOC110501699
representative True

Chromosome Information


Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 28819330 ~ 28826708 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CTAATTGTAGGTTGTTGTTTTAATGTTTGTCACAGCTTTCCTGACATTTGAGATCCCACTTACTAGTTTATCAGAGACAAAGCTGTATGATGGGTCTGGAACTGAAGTTGATGGGGATGTGTTTGAGGAGGTGGTGACACGGCCAGATTTAGGTGTTTTCAAGCTCACACTGAACAATGATGCTAAAGTTATGTGCTGGTTATCAAGTCGTGGTTATTTGTGGCATCACTTTCAATATAACCATACATTTGACATGTCTGTGTTGTTATTGTGTATTTCAGAATCTTCCCTGGTGAGTCCTGTCTCTGCCAGTTCTGTGATGGGTGGTTCAGACCATGAGTCGGATGATACAATTATTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2056195 lncRNA downstream 179 28821738 ~ 28826108 (-) False LOC110501699
TU2056183 lncRNA downstream 29972 28796110 ~ 28796315 (-) True G1796699
TU2056179 lncRNA downstream 33683 28792392 ~ 28792604 (-) True G1796695
TU2056164 lncRNA downstream 70030 28756008 ~ 28756257 (-) True G1796687
TU2055987 lncRNA downstream 70896 28755142 ~ 28755391 (-) True G1796546
TU2056221 lncRNA upstream 33172 28859817 ~ 28860023 (-) True G1796736
TU2056223 lncRNA upstream 37474 28864119 ~ 28864548 (-) True G1796738
TU2056224 lncRNA upstream 38354 28864999 ~ 28865208 (-) True G1796739
TU2056226 lncRNA upstream 44939 28871584 ~ 28871918 (-) True G1796741
TU2056228 lncRNA upstream 45950 28872595 ~ 28872805 (-) True G1796743
trnan-guu-200 mRNA downstream 106155 28720059 ~ 28720132 (-) False trnan-guu-200
XM_036959044.1 mRNA downstream 277722 28538705 ~ 28548565 (-) False LOC110501696
XM_036959045.1 mRNA downstream 277722 28538705 ~ 28548565 (-) True LOC110501696
XM_036959043.1 mRNA downstream 283332 28538705 ~ 28542955 (-) False LOC110501696
LOC110502083 mRNA downstream 763604 28058893 ~ 28062683 (-) True LOC110502083
XR_005038814.1 mRNA upstream 497500 29324145 ~ 29325269 (-) True LOC118943585
XM_021579450.2 mRNA upstream 606907 29433552 ~ 29441063 (-) False LOC110501708
XM_021579449.2 mRNA upstream 606907 29433552 ~ 29441071 (-) False LOC110501708
XM_021579452.2 mRNA upstream 779418 29606063 ~ 29619908 (-) True dnajc15
XM_021579453.2 mRNA upstream 880167 29706812 ~ 29727741 (-) True tnfsf11
TU2055842 other downstream 199396 28626138 ~ 28626891 (-) True G1796401
TU2055669 other downstream 387516 28434915 ~ 28438771 (-) False G1796239
TU2055631 other downstream 491666 28334224 ~ 28334621 (-) True G1796204
TU2055220 other downstream 813597 28009655 ~ 28012690 (-) True LOC110501691
TU2055231 other downstream 844908 27980664 ~ 27981379 (-) True G1795850
TU2056693 other upstream 385019 29211664 ~ 29243649 (-) False G1797146
TU2056696 other upstream 385019 29211664 ~ 29243649 (-) True G1797146
TU2057122 other upstream 832822 29659467 ~ 29660947 (-) True G1797556
TU2057451 other upstream 1011632 29838277 ~ 29843180 (-) True LOC110501714
TU2057553 other upstream 1144913 29971558 ~ 29978535 (-) True G1797936

Expression Profile