Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_021579991.2 |
| length | 946 |
| RNA type | mRNA |
| GC content | 0.54 |
| exon number | 3 |
| gene id | LOC110502121 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_048586.1 |
| NCBI id | CM023240.2 |
| chromosome length | 52474311 |
| location | 28993333 ~ 28994549 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| species | rainbow trout (Oncorhynchus mykiss) |
| id | name | namespace |
|---|---|---|
| GO:0005886 | plasma membrane | cellular_component |
| GO:0005923 | bicellular tight junction | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005198 | structural molecule activity | molecular_function |
| id | description |
|---|---|
| K06087 | CLDN; claudin |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU2056160 | lncRNA | upstream | 6460 | 28986572 ~ 28986873 (+) | True | G1796683 |
| TU2056145 | lncRNA | upstream | 9107 | 28977890 ~ 28984226 (+) | False | LOC110502085 |
| TU2056154 | lncRNA | upstream | 9107 | 28980898 ~ 28984226 (+) | True | LOC110502085 |
| TU2055997 | lncRNA | upstream | 16599 | 28974514 ~ 28976734 (+) | True | epha6 |
| TU2056099 | lncRNA | upstream | 52195 | 28932411 ~ 28941138 (+) | True | G1796642 |
| TU2056162 | lncRNA | downstream | 5032 | 28999581 ~ 28999793 (+) | True | G1796685 |
| TU2056346 | lncRNA | downstream | 25494 | 29020043 ~ 29020596 (+) | True | G1796835 |
| TU2056350 | lncRNA | downstream | 30069 | 29024618 ~ 29025673 (+) | True | G1796839 |
| TU2056352 | lncRNA | downstream | 32526 | 29027075 ~ 29027468 (+) | True | G1796841 |
| TU2056373 | lncRNA | downstream | 48601 | 29043150 ~ 29043457 (+) | True | G1796862 |
| XR_005038813.1 | mRNA | upstream | 12132 | 28980218 ~ 28981201 (+) | False | LOC110502085 |
| XR_005038811.1 | mRNA | upstream | 16594 | 28755803 ~ 28976739 (+) | False | epha6 |
| XM_036959046.1 | mRNA | upstream | 16594 | 28755807 ~ 28976739 (+) | False | epha6 |
| XM_036959048.1 | mRNA | upstream | 34351 | 28755790 ~ 28958982 (+) | False | epha6 |
| XM_021579434.2 | mRNA | upstream | 290669 | 28701867 ~ 28702664 (+) | True | LOC110501697 |
| XM_021579436.2 | mRNA | downstream | 3214 | 28997763 ~ 29010281 (+) | False | LOC110501700 |
| XM_036959049.1 | mRNA | downstream | 69090 | 29063639 ~ 29094498 (+) | False | LOC110501701 |
| XM_036959051.1 | mRNA | downstream | 69090 | 29063639 ~ 29094498 (+) | False | LOC110501701 |
| XM_036959050.1 | mRNA | downstream | 69174 | 29063723 ~ 29094498 (+) | True | LOC110501701 |
| XM_036959055.1 | mRNA | downstream | 107564 | 29102113 ~ 29167753 (+) | False | LOC110501702 |
| TU2056148 | other | upstream | 9107 | 28977890 ~ 28984226 (+) | False | LOC110502085 |
| TU2054913 | other | upstream | 901217 | 28091565 ~ 28092116 (+) | True | G1795550 |
| TU2054839 | other | upstream | 955255 | 28036928 ~ 28038078 (+) | True | LOC110501693 |
| TU2054765 | other | upstream | 1080458 | 27903582 ~ 27912875 (+) | True | G1795411 |
| TU2052918 | other | upstream | 2677090 | 26315826 ~ 26316243 (+) | True | G1793717 |
| TU2055989 | other | downstream | 14075 | 29008624 ~ 29010273 (+) | False | LOC110501700 |
| TU2055990 | other | downstream | 14075 | 29008624 ~ 29010273 (+) | False | LOC110501700 |
| TU2055991 | other | downstream | 14075 | 29008624 ~ 29010273 (+) | True | LOC110501700 |
| TU2057150 | other | downstream | 749643 | 29744192 ~ 29744854 (+) | True | G1797582 |
| TU2057325 | other | downstream | 929008 | 29923557 ~ 29925382 (+) | True | LOC118943632 |
