RNA id: TU2055989


Basic Information

Item Value
RNA id TU2055989
length 1606
RNA type TUCP
GC content 0.37
exon number 2
gene id LOC110501700
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 28997763 ~ 29010281 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAATGAAAAATAAGAGTTAGATGGGTTTCAATCACATTTTCAGCTCTACTGATGGTCTTGTCACAAAACCTTTTGAGTTATATAATGTATTCACTCTGGTCTTGTCACGAAACCTTTTGAGTTATATAATGTATTCACTCTGGTCTTGTCACGAAACCTTTTGAGTTATATAATGTATTCACTCTGGTCTTGTCACGAAACCTTTTGAGTTATATAATGTATTCACTCCGGTCTTGGcacgtgtgctctagccaacagctggcagatacagtgcaggtagatTACCTAtgttatgagattattatggataagagtgtGTTTTTCAAACGGCAGCCAGGAATCGATCATGTCACCAGAAGAAGACCCTCAATATTttttggaaaggagcatcaaatTCATCACCTTGCACATTCACCCACtgtgtgaagttcatcataacttatttcaactgcagcctaataaactgcatgattttccgagtcgtagtgggaggaccacacaatatATCATTGCAtcactccaagtttacttcgataggATGGTTATTATaccaatatttgcgcataaaggcgcTTCCACTaccatttctcacataattcattttacagacacaagaAGATCACACCATGTTGAACCAACATTGTCtgttggcatttataaaattgtatcgGCATTTCTTGTTTCCATCAGCCCAGTCGTGACTTGTTTATGCGTCAGGTAATTGATGCTCATGAAATGGCTGGATGGAAACGTAGTCAGTGAACTGACACAAGAAGAAAAAACTGCTGATACACAACCACATTTCTAAATCGCACCTGGTGTATTATACTATTCTAActgtcaacagtaagttgagaccctgacCGACTTCCTTTTTAAGACATTTGTGGGGAGACCCCCTAGCAGCCAGGGGCCCTAAGCTTATGTCTCTTATGCCTCGAACCAGCCCTAAACGCTGAGGAAGGTCTGTTGACCAATAGGTTGGTCAGAGAAAACATGTCAAAATGCAGATTTGAGATGATGATGGGAAATTTGGTTGTTGTTTCGATGTTGTTGAGTATTTCTATTCTCTGCTTCACTCctctcaaatagtatttgttagTAAACATTTGCTGGTCTTAATATATCATTTTAATCTGTTTGAATTATGGCCTTAATTTGGGTAGTATTGGGAGCTGGTCTGATGCTATGCAAAGTGTCAGAGTGGACTTGTGTGTCAGGCAGTCTGTTTAGAATGTAATGTGAATGTAAAGTTTCCTCTCCTTCAACCAGGAGACCAGGCTTCATGCTGTCTTATGTGCTACAGTATCACTGGAAAACCAAATCAAAATGAAAGAATAAAAAACATAATCACATCAGTTGCTCGGCTGGCTATACTAAATGTGCTTCTATGTCGTAAATGGAAATATATATTTATGTGTGATACATGTATATACCAACAAAGTCAGCATATGAACAAATGGAATATACGTTTCAATGCAACGTTATCAATTATTTATCCGTTTAGTGAGGTGAAATTACAGCTACAtaattattcatttatttatgcaGTGTCTATAAAATTATGGTGATTAAAATGTGAGGTAAATAAATGATATTATTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2056162 lncRNA upstream 8831 28999581 ~ 28999793 (+) True G1796685
TU2056160 lncRNA upstream 21751 28986572 ~ 28986873 (+) True G1796683
TU2056145 lncRNA upstream 24398 28977890 ~ 28984226 (+) False LOC110502085
TU2056154 lncRNA upstream 24398 28980898 ~ 28984226 (+) True LOC110502085
TU2055997 lncRNA upstream 31890 28974514 ~ 28976734 (+) True epha6
TU2056346 lncRNA downstream 9770 29020043 ~ 29020596 (+) True G1796835
TU2056350 lncRNA downstream 14345 29024618 ~ 29025673 (+) True G1796839
TU2056352 lncRNA downstream 16802 29027075 ~ 29027468 (+) True G1796841
TU2056373 lncRNA downstream 32877 29043150 ~ 29043457 (+) True G1796862
TU2056484 lncRNA downstream 237664 29247937 ~ 29248165 (+) True G1796954
XM_021579991.2 mRNA upstream 14075 28993333 ~ 28994549 (+) True LOC110502121
XR_005038813.1 mRNA upstream 27423 28980218 ~ 28981201 (+) False LOC110502085
XR_005038811.1 mRNA upstream 31885 28755803 ~ 28976739 (+) False epha6
XM_036959046.1 mRNA upstream 31885 28755807 ~ 28976739 (+) False epha6
XM_036959048.1 mRNA upstream 49642 28755790 ~ 28958982 (+) False epha6
XM_036959049.1 mRNA downstream 53366 29063639 ~ 29094498 (+) False LOC110501701
XM_036959051.1 mRNA downstream 53366 29063639 ~ 29094498 (+) False LOC110501701
XM_036959050.1 mRNA downstream 53450 29063723 ~ 29094498 (+) True LOC110501701
XM_036959055.1 mRNA downstream 91840 29102113 ~ 29167753 (+) False LOC110501702
XM_036959057.1 mRNA downstream 112051 29122324 ~ 29167753 (+) False LOC110501702
TU2056148 other upstream 24398 28977890 ~ 28984226 (+) False LOC110502085
TU2054913 other upstream 916508 28091565 ~ 28092116 (+) True G1795550
TU2054839 other upstream 970546 28036928 ~ 28038078 (+) True LOC110501693
TU2054765 other upstream 1095749 27903582 ~ 27912875 (+) True G1795411
TU2052918 other upstream 2692381 26315826 ~ 26316243 (+) True G1793717
TU2057150 other downstream 733919 29744192 ~ 29744854 (+) True G1797582
TU2057325 other downstream 913284 29923557 ~ 29925382 (+) True LOC118943632
TU2057803 other downstream 1490383 30500656 ~ 30545954 (+) True G1798168
TU2058046 other downstream 1878388 30888661 ~ 30891067 (+) False G1798397
TU2058047 other downstream 1878388 30888661 ~ 30891067 (+) False G1798397

Expression Profile