RNA id: TCONS_00051354


Basic Information

Item Value
RNA id TCONS_00051354
length 761
RNA type processed_transcript
GC content 0.50
exon number 5
gene id XLOC_026336
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 25059502 ~ 25086986 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAACTTGCATGTGGTGGTTCCTTCAGCATGTTACCTTTAGGTTAACCTTTTGGTTTGCAGTTTTTAATTCGCACGAGTGTGCAAACGTACTCTACCTCATGTTAAAAGTATACGGCTCCGTTCAGCTGACCGGGGATTTAAAGCGACGATGTTTCATTCCAGTAGCGGTTTACTAAGAGCTGCCGTCCAGTGCGCTTCACGATCTTACTGGAGTCCTGggTCTGTGTGGTGTCCATGCAGGCATGTGTCTGTGAAAACAGAGGGATGGAATTCAAAGAAAGTTCCTCAGAGATACCTGGGTCAGCCCAGTCCATACACACACCCTCACCTCATCCGACACGGTGAGGTAACGCCAGGTCTCACCCAGACAGAGTATGAGCTTCGTCGGCAGCGTTTAGCATCTCTGATTGAGATTCAGGCAGAGCGACAAACAGAACCAGGATTTCCTGTACCTGACAGGAATTACGGAGCCGGATAGTGCACTGGTCATGTACGGATCAAGTAAACCAGACCAGGCTGTGCTGTTTGTCCCACGCCGAGACCCAGCCCGAGAGCTTTGGGATGGACCTCGTTCTGGCAAAGATGGTGCAGCTGCTTTAACAGGTCTCGAGCGGGTTCACAGTACTGAAGAACTGGGTGTAGTGCTAAAAAGCATAAAAGGAGGAACTGTATGGTATGACAACTCTCAGCCTTGTCATCCACGGTTACATCAAACTCATGTGCGCCCCCTGTTGGAAGGAGGACAGCTGGTGAAGTCTCTC

Function

GO:

id name namespace
GO:0007369 gastrulation biological_process
GO:0006508 proteolysis biological_process
GO:0005739 mitochondrion cellular_component
GO:0004177 aminopeptidase activity molecular_function
GO:0030145 manganese ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2076 Predicted to enable aminopeptidase activity. Acts upstream of or within gastrulation. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in nephronophthisis-like nephropathy 1. Orthologous to human XPNPEP3 (X-prolyl aminopeptidase 3).

Ensembl:

ensembl_id ENSDART00000135047

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00053015 lncRNA downstream 1028595 23701286 ~ 24050854 (-) False XLOC_026322
TCONS_00053014 lncRNA downstream 1029159 23701286 ~ 24050290 (-) False XLOC_026322
TCONS_00051338 lncRNA downstream 1029366 23934882 ~ 24050083 (-) True XLOC_026322
TCONS_00053013 lncRNA downstream 1029385 23701286 ~ 24050064 (-) False XLOC_026322
TCONS_00051335 lncRNA downstream 1218508 23747574 ~ 23860941 (-) False XLOC_026322
TCONS_00051360 lncRNA upstream 45069 25132020 ~ 25135109 (-) True XLOC_026339
TCONS_00051366 lncRNA upstream 183768 25270719 ~ 25273434 (-) False XLOC_026342
TCONS_00051380 lncRNA upstream 595933 25682884 ~ 25699598 (-) False XLOC_026348
TCONS_00051379 lncRNA upstream 595933 25682884 ~ 25701218 (-) False XLOC_026348
TCONS_00053019 lncRNA upstream 604375 25691326 ~ 25699602 (-) False XLOC_026348
TCONS_00051351 mRNA downstream 23654 24996930 ~ 25055795 (-) False XLOC_026335
TCONS_00051352 mRNA downstream 25447 24998094 ~ 25054002 (-) True XLOC_026335
TCONS_00051350 mRNA downstream 99382 24973025 ~ 24980067 (-) True XLOC_026334
TCONS_00051349 mRNA downstream 170204 24793921 ~ 24909245 (-) True XLOC_026333
TCONS_00051347 mRNA downstream 398045 24675029 ~ 24681404 (-) True XLOC_026331
TCONS_00051355 mRNA upstream 15009 25101960 ~ 25107802 (-) False XLOC_026337
TCONS_00051356 mRNA upstream 15013 25101964 ~ 25106878 (-) True XLOC_026337
TCONS_00051357 mRNA upstream 22017 25108968 ~ 25119839 (-) False XLOC_026338
TCONS_00051358 mRNA upstream 22926 25109877 ~ 25118777 (-) False XLOC_026338
TCONS_00051359 mRNA upstream 24404 25111355 ~ 25116208 (-) True XLOC_026338
TCONS_00051348 other downstream 333568 24745766 ~ 24745881 (-) True XLOC_026332
TCONS_00051343 other downstream 676180 24403149 ~ 24403269 (-) True XLOC_026329
TCONS_00051337 other downstream 1261403 23817922 ~ 23818046 (-) True XLOC_026325
TCONS_00051315 other downstream 1644448 23430245 ~ 23435001 (-) True XLOC_026315
TCONS_00051313 other downstream 1696841 23382492 ~ 23382608 (-) True XLOC_026314
TCONS_00051368 other upstream 187191 25274142 ~ 25275351 (-) True XLOC_026342
TCONS_00051408 other upstream 1576097 26663048 ~ 26663165 (-) True XLOC_026371
TCONS_00051423 other upstream 1978434 27065385 ~ 27066120 (-) True XLOC_026380
TCONS_00051424 other upstream 1996347 27083298 ~ 27083414 (-) True XLOC_026381
TCONS_00051431 other upstream 2556405 27643356 ~ 27647823 (-) False XLOC_026385

Expression Profile

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