RNA id: XR_005038814.1


Basic Information

Item Value
RNA id XR_005038814.1
length 333
RNA type mRNA
GC content 0.51
exon number 3
gene id LOC118943585
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 29324145 ~ 29325269 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTCGTCAACTGTTTGTGACCCAACTGTTATCAACTGCACGTGAAGAACAGAAATCAAAGGATTGCTGCTATGTCTGAAAAAACGGAGGTTGATTTAACCGGAGCTAAGCAAAACCATGGCGTATGGCTAGTAAAGGTTTCCAGTGCCGAGCCCAGCAGTGCGCCAACGCGTCAGGGAAAGGAGAGGTTGGAAAGTGTCATTCACACTGAATGAGGACCTGACCAGCCTGTCTGCATTTGGGGAGAAGGCAGCGTCGGTACGAGCCCCACGGGACCATCCAATGACCATGCACAGTGTAGGGGGAAAGACTATGGCTGTGTTCACTGAAAGCT

Function

GO:

id name namespace
GO:0006367 transcription initiation from RNA polymerase II promoter biological_process
GO:0006413 translational initiation biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005674 transcription factor TFIIF complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2056753 lncRNA downstream 7210 29316671 ~ 29316935 (-) True G1797202
TU2056740 lncRNA downstream 29999 29293901 ~ 29294146 (-) True G1797189
TU2056739 lncRNA downstream 30901 29292897 ~ 29293244 (-) True G1797188
TU2056729 lncRNA downstream 54483 29269364 ~ 29269662 (-) True G1797179
TU2056718 lncRNA downstream 73931 29249766 ~ 29250214 (-) True G1797168
TU2056840 lncRNA upstream 102217 29427486 ~ 29427693 (-) True G1797285
TU2056843 lncRNA upstream 105361 29430630 ~ 29430833 (-) True G1797288
TU2056845 lncRNA upstream 107373 29432642 ~ 29432881 (-) True G1797290
TU2056823 lncRNA upstream 108323 29433592 ~ 29441041 (-) True LOC110501708
TU2056851 lncRNA upstream 117317 29442586 ~ 29442813 (-) True G1797296
XR_005038812.1 mRNA downstream 497437 28819330 ~ 28826708 (-) False LOC110501699
trnan-guu-200 mRNA downstream 604013 28720059 ~ 28720132 (-) False trnan-guu-200
XM_036959044.1 mRNA downstream 775580 28538705 ~ 28548565 (-) False LOC110501696
XM_036959045.1 mRNA downstream 775580 28538705 ~ 28548565 (-) True LOC110501696
XM_036959043.1 mRNA downstream 781190 28538705 ~ 28542955 (-) False LOC110501696
XM_021579450.2 mRNA upstream 108283 29433552 ~ 29441063 (-) False LOC110501708
XM_021579449.2 mRNA upstream 108283 29433552 ~ 29441071 (-) False LOC110501708
XM_021579452.2 mRNA upstream 280794 29606063 ~ 29619908 (-) True dnajc15
XM_021579453.2 mRNA upstream 381543 29706812 ~ 29727741 (-) True tnfsf11
XM_021579454.2 mRNA upstream 420100 29745369 ~ 29770849 (-) False LOC110501713
TU2056693 other downstream 80496 29211664 ~ 29243649 (-) False G1797146
TU2056696 other downstream 80496 29211664 ~ 29243649 (-) True G1797146
TU2056199 other downstream 497500 28826287 ~ 28826645 (-) True LOC110501699
TU2055842 other downstream 697254 28626138 ~ 28626891 (-) True G1796401
TU2055669 other downstream 885374 28434915 ~ 28438771 (-) False G1796239
TU2057122 other upstream 334198 29659467 ~ 29660947 (-) True G1797556
TU2057451 other upstream 513008 29838277 ~ 29843180 (-) True LOC110501714
TU2057553 other upstream 646289 29971558 ~ 29978535 (-) True G1797936
TU2058411 other upstream 745806 30071075 ~ 30071764 (-) True G1798732
TU2058468 other upstream 834965 30160234 ~ 30160686 (-) True G1798781

Expression Profile