RNA id: XM_021579450.2



Basic Information


Item Value
RNA id XM_021579450.2
length 765
RNA type mRNA
GC content 0.51
exon number 3
gene id LOC110501708
representative False

Chromosome Information


Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 29433552 ~ 29441071 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATGGAAGCGCACTTCCGTCCACGCGCACGTCAGCAGGTGCAGACAGAGAGAAGTGGGGTCTCGTGGCTTCATCATCACTGCATCAGAATAACGCCGGTATATAATACTTTTACATCAATATAACATTCTCAGAAGATGGTAGCAAAACAAAGGATCCGTATGGCAAACGAAAAGCACAGCAAAAACATCACGCAGAGAGGCAACGTTGCAAAGACCCTGCGACCTCAGGAGGAGAAGTACCCCGTGGGGCCGTGGCTCCTGGCTCTGTTCGTCTTCGTCGTCTGTGGATCAGCCATTTTTCAGATCATCCAGAGCATCAGGATGGGAATGTGATCCAGAGGCCCCACCAGACTCCCCTTTCCCCCTCACACCCCTTCACCAGACCTGGGGCTGCTCGCCACCCTACGTTCCTAACACCTCCAGGAGGCCCGACTCAGGACAGCTCTTTGTCCATCAGGGCAGGCCTGGGAGAGGAATGGACCACCCCCCTTCCCCCCTGCCATCCTCGATCACATTTACAGAGTTCCAGGGCAGGAAGATGAAAGCTTTTCTACTGACAGTTTGAACCACAACAACTGGCTGGATGAACCTTGTACAGTGTGTCTTATACCTGCTCATAtgggtgagtgtatgtgtgtgtgagagagtgtgtgcagTCCAAGATGTGACTGGCTGCTGACGATGTGCCATACTGCTGTGTTTCTATATTTATCTGTGTTGCGTGAGaacctttttttaaataaatgtgactTTGTTTGGGAAATG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2056845 lncRNA downstream 671 29432642 ~ 29432881 (-) True G1797290
TU2056843 lncRNA downstream 2719 29430630 ~ 29430833 (-) True G1797288
TU2056840 lncRNA downstream 5859 29427486 ~ 29427693 (-) True G1797285
TU2056753 lncRNA downstream 116617 29316671 ~ 29316935 (-) True G1797202
TU2056740 lncRNA downstream 139406 29293901 ~ 29294146 (-) True G1797189
TU2056851 lncRNA upstream 1523 29442586 ~ 29442813 (-) True G1797296
TU2056854 lncRNA upstream 3056 29444119 ~ 29444439 (-) True G1797299
TU2056863 lncRNA upstream 9267 29450330 ~ 29450575 (-) True G1797308
TU2056870 lncRNA upstream 15965 29457028 ~ 29457252 (-) True G1797315
TU2056879 lncRNA upstream 28257 29469320 ~ 29469563 (-) True G1797324
XR_005038814.1 mRNA downstream 108283 29324145 ~ 29325269 (-) True LOC118943585
XR_005038812.1 mRNA downstream 606844 28819330 ~ 28826708 (-) False LOC110501699
trnan-guu-200 mRNA downstream 713420 28720059 ~ 28720132 (-) False trnan-guu-200
XM_036959044.1 mRNA downstream 884987 28538705 ~ 28548565 (-) False LOC110501696
XM_036959045.1 mRNA downstream 884987 28538705 ~ 28548565 (-) True LOC110501696
XM_021579452.2 mRNA upstream 165000 29606063 ~ 29619908 (-) True dnajc15
XM_021579453.2 mRNA upstream 265749 29706812 ~ 29727741 (-) True tnfsf11
XM_021579454.2 mRNA upstream 304306 29745369 ~ 29770849 (-) False LOC110501713
XM_021579455.2 mRNA upstream 304306 29745369 ~ 29770850 (-) False LOC110501713
XM_021579457.2 mRNA upstream 394435 29835498 ~ 29846456 (-) False LOC110501714
TU2056693 other downstream 189903 29211664 ~ 29243649 (-) False G1797146
TU2056696 other downstream 189903 29211664 ~ 29243649 (-) True G1797146
TU2056199 other downstream 606907 28826287 ~ 28826645 (-) True LOC110501699
TU2055842 other downstream 806661 28626138 ~ 28626891 (-) True G1796401
TU2055669 other downstream 994781 28434915 ~ 28438771 (-) False G1796239
TU2057122 other upstream 218404 29659467 ~ 29660947 (-) True G1797556
TU2057451 other upstream 397214 29838277 ~ 29843180 (-) True LOC110501714
TU2057553 other upstream 530495 29971558 ~ 29978535 (-) True G1797936
TU2058411 other upstream 630012 30071075 ~ 30071764 (-) True G1798732
TU2058468 other upstream 719171 30160234 ~ 30160686 (-) True G1798781

Expression Profile