RNA id: XM_021579453.2


Basic Information

Item Value
RNA id XM_021579453.2
length 3191
RNA type mRNA
GC content 0.44
exon number 4
gene id tnfsf11
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 29706812 ~ 29727741 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAGAGGGAGCCGCTAGTCTTCTGCCCACCCACTGTTTATAgctctcctctgtcagaaactCAGAACTTCCTTCCTTGCAGTAAGAGTAGTCTATTCATCCAGAGCACCAGGACTCACCATGGCAGCTAATGACTACCGAGGCTACCTGAGGAACCACGCCGACATGGAGGGCGCTCAGTCCCGCTACCACCCGTCCCATGGCTCGGAACCCAAATATAGACCGTTTATATTCGTTACTCTGGCTGTTATGGGATTGCTGCAGATTGCATCGAGTGTGGCGATCTTGTTACACTTGACAGGTTATCTCCAAGAGGTCGATCTCTCCTCTGCAACGCAGCAGCCAATGGAGGAAGTGCAGATGGAACCCATCATGTTCGACGCCCTGAAGGACCCGAGGAAAGGCAGACAACGCTGCAAGAACCAGGAGAGGGAGGGGCTTCCATCAGCTCATCTACCAATCAGAGCAACTATAGACTATGTGAAGAAAGGGGAGCTGAGAGCAGCTATGATCCATTGGGATGAGGCGCAGGGCCACCTGAAGAAGATGCGTTACCATGACGGCCGTCTCCTGGTGGATGAGCCAGGCCTGTACTCCGTCTACGCCAAGACCTGTTTCCGCTACTACGACCTGGGACCTGACACAGAGCCTGGCGATGCTACGCCCCAGGCCGTGGACGTGAACAACGCCCAGCTCATCCAGTATATCTCCCACGAGAAACACACGTCCCTGCCCAGCAAGTCTGTGGTGCTGATGAAGACAGGCAGCACCATGCGCTGGAATAACTCCCAGTATAACATGTACTGTGCCCAGCAGGGCAGGGGGGTGATGCTACAGCAAGGGGATGGACTGTTTGTTAATGTGTCCAATGCCTGGATGCTGGATCCTGAACCAGAGGGGACGTACTTTGGGGCGATCAAGATAGGGAACTGAAACCGcgtacagaggaggaggaggatgtgctACTGAACGTTCTATAGACGTAACTGCCAAAGaaccactgagagagagacagagcacttGTTGTATGTAACATTactgaatttgtatttgatttgttTGAGTTTTTTATTGAAAGGAATGGGCTATGTTGCTCTTCACCAGATAGAGAATTAGGATATGCAGTCATTTAAGTGAGGTGATATGGATACCTCCGTTCACTCACTAGGCCTCAACAAAACCCATATGTCGTTCACACATAGACTTAACCTGTTCCTTATGGTTCAAAACTGCACAGGATGCTTTTTAGTTCAACATTTTATAAAGTTGATAGTTATCAACCATTTTATATTGTTGATATTTCCCATTCCAGGGAGCACTTTTGAAAAATGTTGTTACGATGTGTTTTTTAAAGTATAGCAGTGTGGATCCTATCTTCTGTTTATCAGCCGACACAAAGTCATTCCTCATCGCTAGTCTGGCCCCTCATAGTTTACAAAACATTGTCATCGTCCTGAACAGAAGCACAGCTGGGGTATTTTGTTTATAACTGAGGAGAGTTTCCACCAGTGTACACTTTggtacattcttagaaaaaagggttccaaaagggttcttcgtctgtccccataggagaccactttttggttccaggtagaaccctttttggttccaggtaagggttctacatggaactcaaaagggttctacctgaaaccaacaGGGTTCTACCTTGAatcaaaaggggttcttcaaagggttctccaatggggacagccgaagaacccttttaggttttagatagcaccttttatttttggagaaaaataattctccccaattttgtgatatccaattggtagttacaatcttttctcatcgctgcaactccccaacgggctcggaaGAGGTAAAGATCGAGTCAtacgtcctctgaaacatgacccgtcAAGCCATGCTTTTGCTTAACACctgctcacttaacccagaagccagctgcaccaatgtgttggaggaaacacggTTCAACTGACAACTGAAGTCAGCATGCAGGCGCCCgacctgccacaaggagtcgctagagcgaaATGAGCGAAGGaaagccccccggccaaaccctcccctaacccggacgatgctgggctaattgtccgttgccctatgggactcccggtcatggccggctgtgacacagcctggaatcgaactccaggctgtagtgatgcctcagcactgcgatgcagtgccttagaccacagcagcaccttttttttctaagagtgtaccataAGTATAGTGTAGCCATTAGCCAATGatgctcctctgtctctcttgggTAATGATGAACTCAAGTTTAGAGGGTGAGGAGGTTATTCAGTAGTTAACACAGTATTACTGTCCATTCAGGCCCAGGCAACATTTAATATTACATAGACATTATTTAAAGGAATAACAACAGCTGTGTAAGAACAATGATAAATACTGTATCAATCACTATTGATTTTTGTTTTCCAAGGAAATACAGAAAAGTGGGTATAGAAGTACTCCATAACTGCATGTACTTAGTTTAACCAGGAGAGACCTGCTGCAATCATCCCATTAACTGAGGGGAACATGGTTGTGGTTTGGGTCAAAAGTATTTTTTCTTATTTTGATTCGTTTTCCCCCAAATGACACAGTATTGAACTATTTAGTCCAGTTTTTGGTGGTTTCTACAAGTAATGATTATCAAAACGCTTAAACAACTTACGTGAAGATGCATACTGAAGATAGCTGGCCTGTCTTACCgtaggggaggagagcagagattcCTGTCTTTATGAAACTAACGGATCCAAATTGACTTTGGTCCACCTTTTAACTTATAGTTCCTTTTTTCATTTGACTCTTTGAGGTAAATGAGAATATGcactaaatgtatttatttattagctATAACAATGCAGATTGGGACCATTGCTTAAATGACCTGTCTGCTGTAAAATCTTGTGTATTTGATGTCTGTATTACAGTAGGAAGTACTTTGTTTATTAGTAGATGCGCTTTTATTGTCCAAACACAGGGGCTCAATGTTAAAttctgtatttgtatttttttattacgACAATTCTGTGTGCACTTGGCTAGCCGAAGCAGAATATACTGTCCATCATAAGACCGTAGCAAACTTCAGTTTAAAAATCTtgtacattcttttttttttatttgatgttTATTTATGTCAATTTAACTAATAAAATCATTACTTTTATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2057371 lncRNA downstream 18013 29688596 ~ 29688799 (-) True G1797779
TU2057370 lncRNA downstream 18553 29687991 ~ 29688259 (-) True G1797778
TU2057126 lncRNA downstream 41474 29664893 ~ 29665338 (-) True G1797560
TU2057095 lncRNA downstream 65973 29640566 ~ 29640839 (-) True G1797529
TU2057030 lncRNA downstream 114356 29592229 ~ 29592456 (-) True G1797467
TU2057405 lncRNA upstream 8928 29736669 ~ 29736927 (-) True G1797804
TU2057409 lncRNA upstream 14119 29741860 ~ 29742105 (-) True G1797808
TU2057373 lncRNA upstream 15575 29743316 ~ 29743907 (-) False G1797781
TU2057375 lncRNA upstream 15575 29743316 ~ 29744917 (-) True G1797781
TU2057376 lncRNA upstream 17683 29745424 ~ 29746523 (-) True LOC110501713
XM_021579452.2 mRNA downstream 86904 29606063 ~ 29619908 (-) True dnajc15
XM_021579449.2 mRNA downstream 265741 29433552 ~ 29441071 (-) False LOC110501708
XM_021579450.2 mRNA downstream 265749 29433552 ~ 29441063 (-) False LOC110501708
XR_005038814.1 mRNA downstream 381543 29324145 ~ 29325269 (-) True LOC118943585
XR_005038812.1 mRNA downstream 880104 28819330 ~ 28826708 (-) False LOC110501699
XM_021579454.2 mRNA upstream 17628 29745369 ~ 29770849 (-) False LOC110501713
XM_021579455.2 mRNA upstream 17628 29745369 ~ 29770850 (-) False LOC110501713
XM_021579457.2 mRNA upstream 107757 29835498 ~ 29846456 (-) False LOC110501714
NM_001124646.1 mRNA upstream 145519 29873260 ~ 29876558 (-) True pou1f1
XM_021579462.2 mRNA upstream 212398 29940139 ~ 29993639 (-) False LOC110501718
TU2057122 other downstream 45865 29659467 ~ 29660947 (-) True G1797556
TU2056693 other downstream 463163 29211664 ~ 29243649 (-) False G1797146
TU2056696 other downstream 463163 29211664 ~ 29243649 (-) True G1797146
TU2056199 other downstream 880167 28826287 ~ 28826645 (-) True LOC110501699
TU2055842 other downstream 1079921 28626138 ~ 28626891 (-) True G1796401
TU2057451 other upstream 110536 29838277 ~ 29843180 (-) True LOC110501714
TU2057553 other upstream 243817 29971558 ~ 29978535 (-) True G1797936
TU2058411 other upstream 343334 30071075 ~ 30071764 (-) True G1798732
TU2058468 other upstream 432493 30160234 ~ 30160686 (-) True G1798781
TU2058565 other upstream 759248 30486989 ~ 30519672 (-) True G1798869

Expression Profile