RNA id: XM_021579454.2


Basic Information

Item Value
RNA id XM_021579454.2
length 9394
RNA type mRNA
GC content 0.53
exon number 14
gene id LOC110501713
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 29745369 ~ 29770850 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTTTATTTGACTGGAATTTTGCTTGGCATGGCATATTTTCTTAGACATGACGTCACGCAATCGACTACTCTGTGCTTCTCCATCGCCGAGGGAAAGCAGAGCTCAGTGAGTGATTACTACTGCCTGAATCAGTCTTGTTTTCATGGAATGAACTGTCAGTCAGTGGAATATCATCTCGCTTCTAGTCCAACACTTGCTAAATGGTGAGTGGCTAGTCCGCCACACCCAGCCTGCGTTGCCATGGACGCCTGTGCCCGTATCCGAGGAGTTCCTCTCAGGACCAGAGCCTCCATCAGGAAAGAGACGGTGCGTGACAGtgggcctcagtgtgtgaagAGCCTTCTGAGGAGCAGGAAGGAGCTGTGCAGCATGGGACTGGAGCTACAGACCAGAGACACACCACGTCTGACTGAGATCAATTTTGTGTGTTTGCCTGGCCTCTCTGAAGGGGAGGATCTAACTCTACAGGCCCTGTCGTCTCTCCCAGGGGACCTGGCGGAGCTCCTGAGGTCTCCCCACGTTACCAGCCTGAGGAAcgaagaggtgctgctgctgaAGGACAGCAGGAAACCAGCCGACAGGAGGGACTCTACTACACAGcagtgcTCGCTAAAGGCGGTGTGTGTTGTAAGGCACAGCTCCAGCCCGAGTCAGGCCATTGTTGGTGTGTTGGTGGGCCTGCTGGGGCGTTATGCTGCGGGGGTCCGTTATGCCCTGGAGCTCCAGGCCCTCCACAGGGGCACGGCAGAACCCTGCCAGCCCGAGGACGATGACACCAACCAGTCTGTGTCTTCCATCGAAGATGACTTTGTCACTGCTCTGGAACACCTAGAAGAGGAGGCCACTGGAGAGAATAACAACGccGATGACTCTTACCTCCATGGAAACCACCGTGATGTGGCCTCCCAGACAGTCCCTGCCCACAAGAGAGACAAGGACCTATCAGGCTCCAGGATCATAATCAGCTCTTCCCACAGGATGTCCTCAACCAATCGTAGGCCTCCTCCAGAGGTGTCCGTTACCGTACAGTGCTCCAGAAGGGCAGATTCCCAGTGGACCCTCTGCAGCCCTAGAGCCCGGCTCCCCTCCCCCACACGTCCTGTCAGCGAATCAGAGGAGTCGGACGGGTCCAGCCCTAGTCCAATCATCTTCCTAGATGAGGTTGGCTACCAGAAAAGTCTCAAAGCGACACTGGACATCCCTCAGATCCCCGGGGGGCCGACGGACAGGGTGGAGGACTCTGACTCTGAGGTCAGCGAGTTCTTCGACAGCTTTGACCAGTTTGACGACCTAGACGAGCTGAGCTCAGAGAGCTGTACACTCACCTTGCCTTTAGACCCGACTTCCTCTGTTATCATTACCGGCCCAGACCAGAAGAAGAAGTACTCCGGTACTGGCAAGTCAGGGTCCAAGAAAGTGTCCCGAAGCTGTTCCACCATGAACCCTCACCGGTTTGACCAGCGCACCCTCCCTGCGAATGTGAAGAAGCCCACCCCACTCAGAAGTCCCCTCCCCCTTGGCTCTCCATATGGATCCCCTGACTCCCCCCGGCCGGCCCGGACCTCCTCTGAGGAAGGTGGAGGTCCTCTGTTCAGCCCCGTTAGCTCCTCAGCCTTCAGCCCACTCGGAGATGGAGCTCTGGATTACTTCtggaagacagagggagatggaggagatgagtCAGAGCTAAAGAAACCCCAGGACCTGTGTTCCCTCTACAAGACTTACTCAGACTTTGCCAGCAGTCTGTCCAAGGAGATCCTGGGCTCCGTGTGTGGATACCAGTCTCCCGTGAACCTCAACGACAACAAGAACCTGAGCTGTGTCTGTCACAAGGAGTTCCAGAACCAGTCTGGACACGTCATGAAGCTGTCTGAGATCCAGGAGACGGTGACTGTCTCCAAGCTTCAGCAGAAGCCCCAGTCTCTGAAGGACGGCATCCAGAGGTTCGCTACAGACTTGGTAGAGATGAGTCTGGGCAGCGCTCTGAGAGACCTGCAGAAGGGAGTGTCTTCTTGCACCACCACCCTCTGCCACCTGGCTGCCAGACTCACCTCGTCTGTCTTCCAGATGGCCTTCCAGGAGATCGGCATGCGCCGCGCCTATGTCCTGAAGGAACGGGCCATCAACGGGCTGGCTGGGTTCTTGGTGGGAGAGGCAGTGTCGGGCGCTCTGAAGGACTTCCTGACCGTGAAGAAGCAGATGTTCAACAGCACCGTGACTCAGTTTGCCGCCGACCTGGCGGAGGAGCTAGTGTATGAGGGGATGATGGAAGTGTGTCAGTtctcccacccctccacccccctcacCCCCAGTGACTGGTCCTTCAGCGTGGGGGAGGAGGACGATGAGGAGGTGGTGTCCTCCTATGCCTCGGACCTCTCTGAGTCTGTCCTCCAGGAGGCCTTCATCGAACTGTCCCAGGCTGACGTGGCCTTCACCACCCAAGCAGCCATCAGTGTCTCTCTGGACAACACATTCAACGTCAGCACTGACGAAACACACACTACCTGCAGTACTGCTGCTGACCACCAGCCTAACCCTGCCGAGGAAGGCCCAGGTCCATCAGGGGAGGATGGCTGTACTGTGAAGAAGGCTCTGTTCTGTGTGTCTGGGATGGCCAGCTGTGTACCTGTCCCCCAGGCAGGCCAGGCCCTCTTCCACGACTCAGAAGAGATCTGCCAGTGTAAGATCAGCCAGTGTAAGATCAGCCTGGCCCACACCTCCCAGACCAGCCCCAAGAGGAGCTGCAGCTCAGAGAGCAGAATGGTGACCACAGCCGCCTCTGATGCTACTGCTGCCACACAGACTGACCTGTTGCCAAAGACCCCCTTTCACAACTTCTCTGGCAACATGGTGGATATGATAGTGAGTGAAGCGTGCGAGCTGATGACTGCCACAAAGATGAAGAAGAAGGTGGAGGACTGTGCTGACTTCCTTTCTAAAGCCATTGTTGGTCGGGGACCTCCATCCAGACAGGAGGGTACTGTCACTGACCagacctcccactcctctctccaccctcattCTCAGAACCCAGGGAGAGTGACCTGTGAGTCAGGCTCCAGGACCAGCAGAGCTGTCTCAGAGACCCGGCCTGTGATGATGAAGGACACTCTAGAGATTCCAGGGTTGGAGATGGACGGCCGGGAAGGCAGGAAGATGGCCTCCGGTGAGGAGATGGTTCCCGGCACTGGTTGCAAGTCCAGCGGGACCCCTGGTAcgcccccctccaccccccagcATCCCAACAAGGTGTCACAGGAGAAGCAGATCAAGCAGTTTTCCAAGAAGCTGAAAGGCAAACTGGCCAAGGAGTTCTCTCCCGCCACCCCTCCTCCCACCCCACACTACCAGCCAGGGCCTGAGCCCAAAGAGTCTCCCTCTGAGATGGACAAGGCTGACTTCATGCTCAAACTGATGAGGTCTCTGTCTGAGGAGGCAGACGGGaacgaggaagaggagggtggagTAGAAGGGCTTAACTCTGGAACCGAGACAGGAAACTGTCTGCAGCCGGAACTCAACCTATTGGTTGGAGGACACAAGATGGCCGACAAGGGAGCCCTCCATTATGCAGAGCGCCTGGCGTGCCACATCGTCTCCATGGCGACAGAGATGGGCACTCTGGgaggagtggaggatagaggtAGGAGGACGGTGGAGGAGAGACGAGACAGCGTGGCCCAGTTCTCGGAGCAGACCCTTAACACGCTGTGGATCTACGCTGGCGAGGTGGCGGGAGAGGTGATCAGTGACGTGAAGAGGATAATGGGGTCAGGACAGTGTCGTCAAAGATCAGTCAAACGAGCCAGCCAGGACTGGTCAGGGGAATGCCCTCACCACCACAACCAACTCCAGCCCAGTGAACACAGCAGGGGCTGCAGAGTGGGTCATCTGGCTGAACAGTGGTCTGGtgacctcctctcctctgtcctccacccgTCAATTTCCACATCTACTGCCAGCTCTGGCCTGTCCTCTGACTACCCCAGCTGTGAAAGTGTGACAGATGAGTATGCTGGCTACCTCATCAGGCTGCTGAAGAAAGAGGGAGGCAGCAGGGAGCTGGTCCTGGATCAGTATGCCAGCCGTCTGGCCTATCGCTCCATCAAACTGGGCCTGGCCCATGCTGCCCGCAACATGAAGAAGAGACCCTCCTCCTCcaggcaccactcctccaggagGCTCCACCAGGATGGCTGCAGGGGGCCCAACGCTGAGCTGTCTGTACCCAGGGACGAAGCAGGGAGAGTGGGATCTCCTTCCAGCGACTCTGATGATGGGAGCCAGAGGGAGTACATGGAGCTGGTGAACTTTGCAGAGTTGTTGGCGTACAACATCACCTGTGACGTCACACGCAAACTCTGTGTGTCGTCAGACCGACTACCCAAGTCCCTGACTGACTCGTGTCTGTATCAGAAATTCAAGCTGGAGGACATGGCAGAGAACCTGATCAGGAACTCCTTTTCATGCCCCCTGCTGGCCAACGAGGGAAAGGGCAGGCAGTACCACAGCACAGGCTGCCTGGACGACGGAGGCTACAGCAGTGGAGTCATGCAGGTCATGGAGCACTATGCCAGGAAGATAGTGGACGACACGCTGGAGATGGGCCTGGCCTCGGCCGGACACCCAGCCCAACAGGGTCCAGACAGACACGCCCACTCTGAGAGACCGTCTGAGGGGGGAGCAGTGGGCTCTGTGCTGGGGGAGACAACCTGCCGATACTGCCAGGTCATCGAGTGTCCGTTCTGCTCGTGGCCTAGCAGGCAGTACATCCTTGGGGCAGGAGCAGGCCAGAGGAGGAGGCCAGACGGGGAGGTGGGGGTGTGTGGCCTGGAGATCCCTGAGATCCACATCGATCTGGACCGCAGGGCAGTGTTCGCAGAGGAGATCGTCACTACGGCAATGGAGGGGGCGAAACGAGAGCTGAGCAACACCAGCCTGAATGCTGACAGCGGGATCGGACACGACGGGCCAAGCTTTGCCGAGAGTCTGACCGCAGAGATCATGACGTCCGCGCTGTCCAACGCATGCCAGACTGCCAACCTCAGCTCTCCAGGCAGGGATGCCACAGAGTCCACGGTGTCCCAGCAGCTCAGTCTGAGTGTGGGAGATGACAGTCTGGGCAGCTGGTCCAACCTTAGCTTTGAGGACGAGCACCCCGACGAGACCAGCAGCTTCCTGCACCTCAGCGACAGCAATGGGAACAGCAGTAGTTGGAGCAGCctggggttagagggagagatgtATGAGGAGCACCTGTCCTTCTCTCCTACCGACAGCGACTGCACTGAGGACAAGGAGCTTGAGACCAAGGATGAATCCTGCGgtTCTGTTCGTGTGGACCGGGGCCAGGCTCAGGCTCATAGGCTCCTCCTGGTGGTCAACTCGGAGCTCAGGGAAATTACCTCTGACCCACAGCACATGACCTTTGACCCCCAGCTCAGGAGCATGCTGCAGTGGGCGGCGGCCTCCATTGCAGACCTGCCAATGGTTCAGCTGGGTCATAGTGACAGCTGGGACCTGCAGCAGCTGCCTGCGGTGGTCCAGAGGCTgaaggagagggagtggagggtggGAGAGCTGCTCCAAGCCCTGCTGCGCTACTGTGAGGAAACCTTCACCCCACCCCAGTCTGAACCCAGAGAGGAGACACCCCAGGCGGGGAGAGCACTCCGCCACACTCCCCTCTTCCAGTGGCTCCTGGAGCATGCCTAGGCTGACTGCACTTACCCTCACCTCTcgctcctcttttctctcctctcctctcccctccctcctcacctctcctctcccctcccctcccctccctcctcacctctccctcctctccctcatttcGTCTTCTCTCCTCACCCCCACGTGACTTACTGTACAGTATTTGTGAAGCCTGCCACATAATGAGCACTACCTGGCCATGTTAAACTAAACCATATGAAGATTCCCATCACTCTTCAGTGATGTGCAGCGTACCTGCCAAACCCCAAATCTAGCCACCTCCTCGTACTGTGGAACCTGTCTCTTATAGGGCTGTACACCCATTCATTACCCAGAGGGCGCTATAAAAACAGCTTTTCTTAATATTATCTATTGTgtttggtgggtgggtgggtgagtgggtaGGTGGGTGAGTGGGCATATATTGCATGCCGTGACTGAAAGTAATTGTGTCTTTTCTTCTCTTTGGTTTTGTTGTGGTTCTTTTGTGTTTAATATTAGGCTGCATATCACATGCGTTGATTAATGTGCCTTTCTGCTAAAGCCCTCTGACACAGCCACTCTTTCTCACATCATCTAGTGTGGGCCGAGGGAATCTGACCCCCGCAACTTCCCTCTCCTACCCCAACACAGAAACACTCCTGCTGTGAATTCACTTTAAGGGTGGTGAGGTGAGGCTGGGCATTTCCACCAGCTGCCCCAGGCCTCTGCCTCCTTATAGATGATACTACAACATGATGAAATGTTTGAGTGAGTGGCCCCATATCCTGTTAGGTTTAACAGTAGAGTTAGAGTCAGTCGGTCAACCACAGCAGCGAACATTCACACAGGCCCAAAATAAATCTCTGGTGTTATTGTGACACTGTGATTGCTTGTATTATTAAGGGAATTTCAGACGATGTGAAATGATGTGGATATTGACCATACTGTGGCTTCTCTACACTGTAATATACATGGCCTGCCTGCGCGTGTTGAACTGTTGAGTTTGCATGGCTGTTCTGCTTCTGACATCCCTGGACAAACGGAGTGAGAACTTAACACTCACTATTGTGTTATGGAACTTCCCAGGACTGCATTAGCAGGCCTTTGTGCTGTGGTCGATTACCATCAGTTACAATGTTATAAACAACATATGCCTGTACGTGCTCCTCAAATGGTTCCATGCTATAGTTCTGCACTGTACTATAGCTGTACCATCAGGAGAGACTATTTCAGTGTTTACCATGGCCTGATCCTCATGCTCTTCATCACTTGAATATTGTTATATTGAGATGCCTGTCAGTGAATGAGCCCTAATGACACTTCAGCTGTGCAATAGCCCCAGTTAGAACTGGCTGACAGCATAGCTGTAGACTCCACGTTGTCAAACTGCTTGACAGCATAGCTATAGACTCCACGTTGTCAAACTGCTTGACAGCATAGCTATAGACTCCACGTTGTCAAACTGCTTGACAGCATAGCTATAGACTCCACGTTGTCAAACTGCTTGACAGCATAGCTATAGACTCCACGTTGTCAAACTGCTTGACAGCATAGCTGTAGACTCCACGTTGTCAAACTGCTTGACAGCATAGCTGTAGACTCCACGTTGTCAAACTGCTTGGCTGTAGACTTCACGTTGTCAAACTGCTTGACAGCGTAGCTATAGACTCCACGTTGTCAAACTGCTTGACAGCATAGCTATAGACTCCACGTTGTCAAACTGCTTGACAGCATAGCTATAGACTCCACGTTGTCAAACTGCTTGGCTGTAGACTCCACGTTGTCAAACTGCTTGGCTGTAGACTCCACGTGAACGGCTTGACAGCATAGCTGTCGACTCCACGTTGTCAAACTGCTTGGCTGTAGACTCCACGTTGTCAAACTGCTTGACCGCATAGCTGTAGACTCCACGTTGTCAAACTGCTTGACAGCATAGCTGTAGACTCCACGTTGTCAAACTGCTTGACAGCATAGCTATAGACTCCACGTTGTCAAACTGCTTGACAGCATAGCTATAGACTCCACGTTGTCAAACTGCTTGACAGCATAGCTATAGACTCCACGTTGTCAAACTGCTTGACAGCATAGCTATAGACTCCACGTTGTCAAACTGCTTGACAGCATAGCTATAGACTCCACGTTGTCAAACTGCTTGACAGCATAGCTATAGACTCCACGTTGTCAAACTGCTTGACAGCATAGCTATAGACTCCACGTTGTCAAACTGCTTGACAGCATAGCTATAGACTCCATGTTGTCAAACTGCTTGACAGCATAGCTATAGACTCCACGTTGTCAAACTGCTTGACAGCATAGCTGTAGACTCCACGTTGTCAAACTGCTTGACAGCATAGCTGTAGACTCCACGTTGTCAAACTGCTTGACAGCATAGCTGTAGACTCCACGTTGTCAAACTGCTTGACAGCATAGCTATAAACTCCACGTTGTCAAACTGCTTGACAGCATAGCTATAGACTCCACGTTGTCAAACTGCTTGACAGCATAGCTATAGACTCCACGTTGTCAAACTGCTTGACAGCATAGCTATAGACTCCACGTTGTCAAACTGCTTGACAGCATAGCTATAGACTCCACATTGTCAAACTGCTTGGCTGTAGACTCCACGTTGTCAAACTGCTTGGCTGTAGACTTCACGTTGTCAAACTGCTTGACAGCATAGCTGTAGACTCCACGTTGTCAAACTGCTTGACAGCATAGCTGTAGACTCCACGTTGTCAAACTGCTTGACAGCATAGCTGTAGACTCCACGTTGTCAAACTGCTTGGCTGTAGACTCCACGTTGTCAAACTGCTTGACCGCATAGCTGTAGACTCCACGTTGTCAAACTGCTTGACAGCATAGCTGTAGACTCCACGTTGTCAAACTGCTTGACAGCATAGCTATAGACTCCACGTTGTCAAACTGCTTGACAGCATAGCTATAGACTCCACGTTGTCAAACTGCTTGGCTGTAGACTCCACGTTGTCAAACTGCTTGGCTGTAGACTCCACGTTGTCAAACTGCTTGACAGCATAGCTGTAGACTCCACGTTGTCAAACTGCTTGACAGCATAGCTGTAGACTCCACGTTGTCAAACTGCTTGGCTGTAGACTCCACGTTGTCAAACTGCTTGGCTGTAGACTCCACGTTGTCAAACTGCTTGACAGCATAGCTGTCGACTCCACGTTGTCAAACTGCTTAACAGCATAGCTGTAGACTCCACGTTGTCAAACTGCTTGACAGCATAGCTGTAGACTCCACGTTGTCAAACTGCTTGAcagcatacagtacagtaggccaCTGCTGATGCCTTGTGTATTAATGCTGATTCTGTGCTGCCAAATGTTTCTGATCCATTAGAAATCTGAAAAATGTTTCACACACATTGTGTTTATAACCTTAATGTATTGGGACACTGTTAAGAACTTTAAAACCTGTATTAGAAAACACATTCCTGAAATGTCTAggagaaaatgtattaaatgggggaaaatgtatgtaattaAAGAGGAATGTATGGCGATAtatgggagatggggagagagtgtAGATAGAGCCTATAAGAGTTtgccaactacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacataaagatataaaactgtatttttttgtgaagaatcaacaacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2057375 lncRNA downstream 452 29743316 ~ 29744917 (-) True G1797781
TU2057373 lncRNA downstream 1462 29743316 ~ 29743907 (-) False G1797781
TU2057409 lncRNA downstream 3264 29741860 ~ 29742105 (-) True G1797808
TU2057405 lncRNA downstream 8442 29736669 ~ 29736927 (-) True G1797804
TU2057371 lncRNA downstream 56570 29688596 ~ 29688799 (-) True G1797779
TU2057452 lncRNA upstream 64994 29835843 ~ 29836120 (-) False LOC110501714
TU2057466 lncRNA upstream 87869 29858718 ~ 29867193 (-) True G1797863
TU2057474 lncRNA upstream 99852 29870701 ~ 29872087 (-) False G1797869
TU2057475 lncRNA upstream 99852 29870701 ~ 29872087 (-) False G1797869
TU2057477 lncRNA upstream 99852 29870701 ~ 29872087 (-) True G1797869
XM_021579453.2 mRNA downstream 17628 29706812 ~ 29727741 (-) True tnfsf11
XM_021579452.2 mRNA downstream 125461 29606063 ~ 29619908 (-) True dnajc15
XM_021579449.2 mRNA downstream 304298 29433552 ~ 29441071 (-) False LOC110501708
XM_021579450.2 mRNA downstream 304306 29433552 ~ 29441063 (-) False LOC110501708
XR_005038814.1 mRNA downstream 420100 29324145 ~ 29325269 (-) True LOC118943585
XM_021579457.2 mRNA upstream 64649 29835498 ~ 29846456 (-) False LOC110501714
NM_001124646.1 mRNA upstream 102411 29873260 ~ 29876558 (-) True pou1f1
XM_021579462.2 mRNA upstream 169290 29940139 ~ 29993639 (-) False LOC110501718
XM_036959070.1 mRNA upstream 169290 29940139 ~ 29993640 (-) False LOC110501718
XM_021579461.2 mRNA upstream 169290 29940139 ~ 29995646 (-) True LOC110501718
TU2057122 other downstream 84422 29659467 ~ 29660947 (-) True G1797556
TU2056693 other downstream 501720 29211664 ~ 29243649 (-) False G1797146
TU2056696 other downstream 501720 29211664 ~ 29243649 (-) True G1797146
TU2056199 other downstream 918724 28826287 ~ 28826645 (-) True LOC110501699
TU2055842 other downstream 1118478 28626138 ~ 28626891 (-) True G1796401
TU2057451 other upstream 67428 29838277 ~ 29843180 (-) True LOC110501714
TU2057553 other upstream 200709 29971558 ~ 29978535 (-) True G1797936
TU2058411 other upstream 300226 30071075 ~ 30071764 (-) True G1798732
TU2058468 other upstream 389385 30160234 ~ 30160686 (-) True G1798781
TU2058565 other upstream 716140 30486989 ~ 30519672 (-) True G1798869

Expression Profile