RNA id: TU2057376


Basic Information

Item Value
RNA id TU2057376
length 1100
lncRNA type sense_over
GC content 0.45
exon number 1
gene id LOC110501713
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 29745369 ~ 29770850 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACAGCATAGCTATAGACTCCACGTTGTCAAACTGCTTGACAGCATAGCTATAGACTCCACATTGTCAAACTGCTTGGCTGTAGACTCCACGTTGTCAAACTGCTTGGCTGTAGACTTCACGTTGTCAAACTGCTTGACAGCATAGCTGTAGACTCCACGTTGTCAAACTGCTTGACAGCATAGCTGTAGACTCCACGTTGTCAAACTGCTTGACAGCATAGCTGTAGACTCCACGTTGTCAAACTGCTTGGCTGTAGACTCCACGTTGTCAAACTGCTTGACCGCATAGCTGTAGACTCCACGTTGTCAAACTGCTTGACAGCATAGCTGTAGACTCCACGTTGTCAAACTGCTTGACAGCATAGCTATAGACTCCACGTTGTCAAACTGCTTGACAGCATAGCTATAGACTCCACGTTGTCAAACTGCTTGGCTGTAGACTCCACGTTGTCAAACTGCTTGGCTGTAGACTCCACGTTGTCAAACTGCTTGACAGCATAGCTGTAGACTCCACGTTGTCAAACTGCTTGACAGCATAGCTGTAGACTCCACGTTGTCAAACTGCTTGGCTGTAGACTCCACGTTGTCAAACTGCTTGGCTGTAGACTCCACGTTGTCAAACTGCTTGACAGCATAGCTGTCGACTCCACGTTGTCAAACTGCTTAACAGCATAGCTGTAGACTCCACGTTGTCAAACTGCTTGACAGCATAGCTGTAGACTCCACGTTGTCAAACTGCTTGAcagcatacagtacagtaggccaCTGCTGATGCCTTGTGTATTAATGCTGATTCTGTGCTGCCAAATGTTTCTGATCCATTAGAAATCTGAAAAATGTTTCACACACATTGTGTTTATAACCTTAATGTATTGGGACACTGTTAAGAACTTTAAAACCTGTATTAGAAAACACATTCCTGAAATGTCTAggagaaaatgtattaaatgggggaaaatgtatgtaattaAAGAGGAATGTATGGCGATAtatgggagatggggagagagtgtAGATAGAGCCTATAAGAGTTtgccaactacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2057375 lncRNA downstream 507 29743316 ~ 29744917 (-) True G1797781
TU2057373 lncRNA downstream 1517 29743316 ~ 29743907 (-) False G1797781
TU2057409 lncRNA downstream 3319 29741860 ~ 29742105 (-) True G1797808
TU2057405 lncRNA downstream 8497 29736669 ~ 29736927 (-) True G1797804
TU2057371 lncRNA downstream 56625 29688596 ~ 29688799 (-) True G1797779
TU2057452 lncRNA upstream 89320 29835843 ~ 29836120 (-) False LOC110501714
TU2057466 lncRNA upstream 112195 29858718 ~ 29867193 (-) True G1797863
TU2057474 lncRNA upstream 124178 29870701 ~ 29872087 (-) False G1797869
TU2057475 lncRNA upstream 124178 29870701 ~ 29872087 (-) False G1797869
TU2057477 lncRNA upstream 124178 29870701 ~ 29872087 (-) True G1797869
XM_021579453.2 mRNA downstream 17683 29706812 ~ 29727741 (-) True tnfsf11
XM_021579452.2 mRNA downstream 125516 29606063 ~ 29619908 (-) True dnajc15
XM_021579449.2 mRNA downstream 304353 29433552 ~ 29441071 (-) False LOC110501708
XM_021579450.2 mRNA downstream 304361 29433552 ~ 29441063 (-) False LOC110501708
XR_005038814.1 mRNA downstream 420155 29324145 ~ 29325269 (-) True LOC118943585
XM_021579457.2 mRNA upstream 88975 29835498 ~ 29846456 (-) False LOC110501714
NM_001124646.1 mRNA upstream 126737 29873260 ~ 29876558 (-) True pou1f1
XM_021579462.2 mRNA upstream 193616 29940139 ~ 29993639 (-) False LOC110501718
XM_036959070.1 mRNA upstream 193616 29940139 ~ 29993640 (-) False LOC110501718
XM_021579461.2 mRNA upstream 193616 29940139 ~ 29995646 (-) True LOC110501718
TU2057122 other downstream 84477 29659467 ~ 29660947 (-) True G1797556
TU2056693 other downstream 501775 29211664 ~ 29243649 (-) False G1797146
TU2056696 other downstream 501775 29211664 ~ 29243649 (-) True G1797146
TU2056199 other downstream 918779 28826287 ~ 28826645 (-) True LOC110501699
TU2055842 other downstream 1118533 28626138 ~ 28626891 (-) True G1796401
TU2057451 other upstream 91754 29838277 ~ 29843180 (-) True LOC110501714
TU2057553 other upstream 225035 29971558 ~ 29978535 (-) True G1797936
TU2058411 other upstream 324552 30071075 ~ 30071764 (-) True G1798732
TU2058468 other upstream 413711 30160234 ~ 30160686 (-) True G1798781
TU2058565 other upstream 740466 30486989 ~ 30519672 (-) True G1798869

Expression Profile