RNA id: NM_001124646.1


Basic Information

Item Value
RNA id NM_001124646.1
length 1591
RNA type mRNA
GC content 0.52
exon number 7
gene id pou1f1
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 29873260 ~ 29876558 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCACCTGAGTGTCTACCTGAGAACAGCTAAGTGCAGGGAAGGTCAATCTTCCTGATCCTATCCAGGTGAGAAGGAGGTCGTGAGATCATCGTGATGTCGTGCCAGGCGTTCAGCGCGGACTCCTTCACCACCCTGGCAGGAGACTCCCTGCCCCTCCTCATGCACCACGCCTCCGCGGCCGACTGCCTGCCCTCCTccgcctccacacacacacacaacatggtgTCCGCAGtCCCGTCaggtctgtctctcctccagtcctccaagCGTTCCCACATGCACCTCTCCACTTCCACCCTTGGCAACGCCCTCAGCAACGGTCCTCCCGGCCTGCACTACCCAGTCACACCCTGTCACTATAGCAACCAACAGACCACTTACGGCATGATGGCAGCTCAGGAGATGCTGTCTGCCAGTATATCTCAGACCAGAATCCTCCAGACCTGCAGCGTCCCGCACCCCAACATGGTCAACGGAGCAAACACACTGCaagGTTCATTGGCCCCTTGTCTGTATAAGTTTCCAGAGCATGGTCTGGGTGGGGGGTCGTGCTCTCTGAGCCACAGTTTCCCCCCACTGCCCCCTGCCGTGTTGTCTGAGGAGCCACCCCTGGGGGGCACTAAGGACCTCCGCCTTAGGAGCCGGCCACCAGATGACCCCCCCGACATGGACTCACCTCAGATACGAGAGCTGGAGAAGTTTGCCAACGACTTCAAACTCCGCAGGATCAAACTGGGGTACACCCAAACTAACGTtggagaggctctggctgcggtGCATGGCTCAGAGTTCAGCCAGACAACCATCTGTCGCTTTGAGAACCTGCAGCTGAGCTTCAAGAACGCCTGCACGTTAAAGGCCATCCTGGCCAAGTGGCTGGACGAAGCAGAGCAGGCCGGGGCTCTGTTTAATGAGAAAATGGGCATGAATGAGCGTAAGAGGAAACGAAGAACCACTATCAGTCTGGGGGCTAAGGAGGCATTGGAGCGTAGTTTCGGGGAGAAGATCAAGCCCTCATCTCAGGAGATTGTCCGTATGGCCGAGGGGCTACACCTGGAGAAGGAGGTGGTCCGGGTCTGGTTCTGTAACCGTCGGCAACGAGAGAAACGGGTCAAGACCAGCCttcaccacagctcctacctgaccAAGGACAGTCCTACGTATagataaccctaacccctatctGTCCCCCAATGCCATAAAACCTTGAGTTCGGGTGTGACCTCATTCTTTAATTGGACTAAAAGCCGTTTGATCTTCAAGTGCCTGCAGCCTAATACAATTTCTCCCAGAAGTGTCTGGTCATTGTAAAAACAAATGACACTAATACATTCCCATGTGTCTTTATCATGATCTGTTTAtctcaaatgtaatatataaacTGAATGATTATGAATGTGAACATCTAATTTATTGACAGATTTGTGTTTTCAAGTCAGAGACATCttcaacccagagagagagagaactatataGAGACATTCTCAGACATTTTGATATGTAAGAAATCAAAACGTCCCAGTTGCACGTGTCATCTTTCATACGTCGTGTTTTCATGATGCGTTTCCCCATGAATAAATACATACAAACC

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09363 POU1F, PIT1; POU domain transcription factor, class 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2057474 lncRNA downstream 1173 29870701 ~ 29872087 (-) False G1797869
TU2057475 lncRNA downstream 1173 29870701 ~ 29872087 (-) False G1797869
TU2057477 lncRNA downstream 1173 29870701 ~ 29872087 (-) True G1797869
TU2057466 lncRNA downstream 6067 29858718 ~ 29867193 (-) True G1797863
TU2057452 lncRNA downstream 37140 29835843 ~ 29836120 (-) False LOC110501714
TU2057551 lncRNA upstream 93413 29969971 ~ 29977559 (-) True G1797935
TU2057575 lncRNA upstream 123157 29999715 ~ 29999982 (-) True G1797958
TU2057578 lncRNA upstream 124712 30001270 ~ 30001578 (-) True G1797961
TU2057579 lncRNA upstream 126455 30003013 ~ 30003216 (-) True G1797962
TU2058410 lncRNA upstream 190871 30067429 ~ 30067655 (-) True G1798731
XM_021579457.2 mRNA downstream 26804 29835498 ~ 29846456 (-) False LOC110501714
XM_021579455.2 mRNA downstream 102410 29745369 ~ 29770850 (-) False LOC110501713
XM_021579454.2 mRNA downstream 102411 29745369 ~ 29770849 (-) False LOC110501713
XM_021579453.2 mRNA downstream 145519 29706812 ~ 29727741 (-) True tnfsf11
XM_021579452.2 mRNA downstream 253352 29606063 ~ 29619908 (-) True dnajc15
XM_021579462.2 mRNA upstream 63581 29940139 ~ 29993639 (-) False LOC110501718
XM_036959070.1 mRNA upstream 63581 29940139 ~ 29993640 (-) False LOC110501718
XM_021579461.2 mRNA upstream 63581 29940139 ~ 29995646 (-) True LOC110501718
XM_036959589.1 mRNA upstream 416552 30293110 ~ 30322552 (-) False mxra5b
XM_021579473.2 mRNA upstream 488047 30364605 ~ 30382857 (-) True LOC110501725
TU2057451 other downstream 30080 29838277 ~ 29843180 (-) True LOC110501714
TU2057122 other downstream 212313 29659467 ~ 29660947 (-) True G1797556
TU2056693 other downstream 629611 29211664 ~ 29243649 (-) False G1797146
TU2056696 other downstream 629611 29211664 ~ 29243649 (-) True G1797146
TU2056199 other downstream 1046615 28826287 ~ 28826645 (-) True LOC110501699
TU2057553 other upstream 95000 29971558 ~ 29978535 (-) True G1797936
TU2058411 other upstream 194517 30071075 ~ 30071764 (-) True G1798732
TU2058468 other upstream 283676 30160234 ~ 30160686 (-) True G1798781
TU2058565 other upstream 610431 30486989 ~ 30519672 (-) True G1798869
TU2058911 other upstream 1084529 30961087 ~ 30963534 (-) False LOC110502090

Expression Profile