RNA id: XM_021579462.2


Basic Information

Item Value
RNA id XM_021579462.2
length 2541
RNA type mRNA
GC content 0.49
exon number 11
gene id LOC110501718
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 29940139 ~ 29995646 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGCTACAGACACCATAACCATcccacactaaacacaaatggactgacagacagatgGTCAGCCGTTCTGCTGTCATGCTAAAGACTAAGGAACAGAGAGACGCAGACCGAAACCGTTTTTCCCACCTGCTAATGAGTTAGACACAGTAAATGGACCCGCCCACCTACAATAACGCTCAATAGATAAAGCATTAGACGAAGgtaatatggagagagagacgttCTGCCTCAGTGGAGGTAAAGAAGAGAGGGATTAGGGAGAGGCGACGATGAAAGACAGATCACGTAAGACAGAAATCAAAGGGACTACTGAGTGGTGTGGCTggaggGGAAGGTGTGAAGATGTTACAGAAAGGAAGTCAGAAAgagtctctcttcctctgtttgtTATTGgTGTCCTGTCCTCCTTTTCTCAGGTCAGAGTACAGTAGTTGTGGAGAGTTTGAGTTCTACAACCAGACCCTCAGTAGCTGCCAGCCCTGCCCACCATGCCAACCTGGACAGGAGCCCCACATGAACTGTGGCTATGGGATTAAGGATgaggactttgtgtgtgtgtcgtgtccgCCGGGGAAGTACTCGAAGGGAAAGTATGAGATCTGCAGGAGACATAAGGACTGTGAAGGTCTGTACCGTGCTACAGTACTCAAACCTGGGACACCAGACAATGATGCAGACTGTGGACCCTGCTTACCTggGTATTACATCCAGGAGAACCGGCCCAGGAACCTGTATGGGATGGTCTGTCACTCGTGTCAAAATGCACCGCGCAACACTAAAGAGTGCATGCTTACCAAAGTTGTGCTGTCAGGCAAAGCCCCCAGTGTCTCAACCAGCAGTACCACCATGTTCCCTCACCCTCACAAAGACCCCACAGGACAGGGTCACCTAGCAACTGCTCTCATCATCGCCATGTCAACCATCTTCATCATGGCCATCGCCATTGTCCTCATCATCATGTTCTACATCCTCAAAGCCAAGCCCAGCGGACAGgCATGCTGCTCTGGTCAGGTGGTGAAGGCTGTGGAGGCTCAGACCAACAAACAGGAGGATAAGAAAGATGTTCCAGACAATGTTGTAATTTTCTCCGAAAAGGATGAATTTGACAAACTCAAACCTACGCCTCCGAAGACGGTGAAAAGtgaGAATGATGCATCGTCAGAGAACGAGCAGCTGTTGAGTCGTAGTATGGATAGTGATGAGGAGGCAGCATTGGAGAGGCAGGGGGCAGCCGATCCTAACCCCAGCCTCTGTCTCCTGAACCTGGGAACCAAGCCGGACCTCTGCCTGCTTTCCCTGGGGCTCCTCAACAAGGATAAGACTGGATCCAACCCCACCAGCCCTATCAACGCTAACAACATTAGCAATAGCAATGCAAACatcatcaataacaacaacaaggcTACAGGGATTCAGAGCCGGAGGAAAAAGATCCTCGATCTGTATGCTAGAGCCTGCAATGTGGCCGAGGgTCTAAGTCCTACAGAACTACCATTTGACTGTCTGGAGAAGGCCAGTCGGATGCTGAGCTCCTCCTACAGTAGTGAGGCAGCCGTGGTGAAGACCTGGAGACACCTGGCAGAGAGTTTTGGCCTGAAGAGGGATGAGATCGGAGGGATGAGTGACGGCCTGCAGCTGTTTGAGAGGATCAGTACAGCCGGATACAGCATCCCAGACCTGCTAACCAGACTGGTGCAGATAGAGAGACTGGATGCTGTGGAGTCACTATGTTCTGATGTACTGGGAGGAGGAGATACACACACTGTCCCTCTGTCCTCACCACGGTGTGCAAGCGTCTGACTCATATACACACTAATgttcacacacactcatatacacacatgcaACAGACGCATGTGCATATACCCGCACATACATTCAGAAACAAACAGTTTTATCCCTCAACATGAAGAATGTCAGCAGGCCTCTCCAGATCTGAAATCTCTCtcctcctcgtctctctgtcttcctctggcaATGGACTGGCAATTAACCTCGCTCGACAAAAGCTTTTTATAACCTTCTTTAACATTTTTGCTTTTGTTTACATAGATCACATGTAGTACATTTCATAatatcagattttaaaaatggcATAATGGACCTCTGCCAGGACCCCTGTGGCCCCAGACCCTCTATTACCCCGCCTGCCCCCAGCGGTCAGCTGCTGCCACTGGCTCTAATTGGTTATCGTGTGGCGGTCTGGTATAATAGTGTTGTGGTTCACAGTCGAGACTTTCAGCACCTAATTAACCACTAAAACCAATGAACCAGTAAAGACCAGATGCCAGAGACTATTAAAGAGACTGCTAACAGACTAGGCCTACTGCAGCCTGAGGAATGCAGGGAGACAGAACTCCAGGAGACCCAGCACTGAGCAACGCTATGGTCAGCCGGGCTCTGACACTATGCTGGGTGATTCCACAggatggcagccattttgtgccaaAAAGCtcagcacatacagtggggagaacaagtatttgatacactgccgattttgcaggttttcctacttacaaagaatgtcgaggtctgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2057474 lncRNA downstream 68052 29870701 ~ 29872087 (-) False G1797869
TU2057475 lncRNA downstream 68052 29870701 ~ 29872087 (-) False G1797869
TU2057477 lncRNA downstream 68052 29870701 ~ 29872087 (-) True G1797869
TU2057466 lncRNA downstream 72946 29858718 ~ 29867193 (-) True G1797863
TU2057452 lncRNA downstream 104019 29835843 ~ 29836120 (-) False LOC110501714
TU2057575 lncRNA upstream 6076 29999715 ~ 29999982 (-) True G1797958
TU2057578 lncRNA upstream 7631 30001270 ~ 30001578 (-) True G1797961
TU2057579 lncRNA upstream 9374 30003013 ~ 30003216 (-) True G1797962
TU2058410 lncRNA upstream 73790 30067429 ~ 30067655 (-) True G1798731
TU2058456 lncRNA upstream 140099 30133738 ~ 30137205 (-) True G1798769
NM_001124646.1 mRNA downstream 63581 29873260 ~ 29876558 (-) True pou1f1
XM_021579457.2 mRNA downstream 93683 29835498 ~ 29846456 (-) False LOC110501714
XM_021579455.2 mRNA downstream 169289 29745369 ~ 29770850 (-) False LOC110501713
XM_021579454.2 mRNA downstream 169290 29745369 ~ 29770849 (-) False LOC110501713
XM_021579453.2 mRNA downstream 212398 29706812 ~ 29727741 (-) True tnfsf11
XM_036959589.1 mRNA upstream 299471 30293110 ~ 30322552 (-) False mxra5b
XM_021579473.2 mRNA upstream 370966 30364605 ~ 30382857 (-) True LOC110501725
XM_021579476.2 mRNA upstream 405536 30399175 ~ 30402935 (-) False mab21l3
XM_036959096.1 mRNA upstream 405536 30399175 ~ 30402935 (-) False mab21l3
XR_005038817.1 mRNA upstream 405799 30399438 ~ 30402064 (-) False mab21l3
TU2057451 other downstream 96959 29838277 ~ 29843180 (-) True LOC110501714
TU2057122 other downstream 279192 29659467 ~ 29660947 (-) True G1797556
TU2056693 other downstream 696490 29211664 ~ 29243649 (-) False G1797146
TU2056696 other downstream 696490 29211664 ~ 29243649 (-) True G1797146
TU2056199 other downstream 1113494 28826287 ~ 28826645 (-) True LOC110501699
TU2058411 other upstream 77436 30071075 ~ 30071764 (-) True G1798732
TU2058468 other upstream 166595 30160234 ~ 30160686 (-) True G1798781
TU2058565 other upstream 493350 30486989 ~ 30519672 (-) True G1798869
TU2058911 other upstream 967448 30961087 ~ 30963534 (-) False LOC110502090
TU2058912 other upstream 967448 30961087 ~ 30963534 (-) True LOC110502090

Expression Profile