RNA id: XM_036959589.1


Basic Information

Item Value
RNA id XM_036959589.1
length 9521
RNA type mRNA
GC content 0.52
exon number 10
gene id mxra5b
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 30293110 ~ 30322552 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAATAGTTTTTACCATCCATTTGGTCTGATTCCTTCCCTTCCTTTCAACTGCACAGGGGAACAATACCTGCTCTGTCGGGAATTGCAAGAACATTTGAATCTATCCGTTATTTTATCCaaacaaatattatttttttcacaAAAGCAaggatatttttttgttgttgattgttTTCACCTCTCTTATATTCATTGCATAAAGTTGTAGCCTATTGAAACGTCAGTAACGTTTTGAATGccaatattatattattaaaaaGACCTGGAATTACATGAATGCGTTGCCGAATCGTCATTTGGATAAAAATGAGACTTGAAGGGATTTTGGCTGTAACGAAATGAAGAATCTTGATATCTTCGGTTTGAAGGATTGCAAGTGAGGGTCCCTCCTATTGAAGATGGCtcacagtgtgtgtggtgtgtctctggctgtggtggtggtgttagtgaCCCTGGTGTCTCCTGGTGGTGCCTGCCCTCGGCCCTGCTCCTGCTACCAGCCCACTGAACTACACTGCACCTTCAGGTCCCTGCTCACCATACCACAGCTTCTACCGCAACATACACTACACATCAACCTAGGGTTCAACAGTATCAGCAGGATCCCAGACAGCTCATTAGCTGGTCTGAGGAGGCTGGAGCAGCTGATGCTTCATGGGAATGACATCCGTGAGATTCCCGACCGAGCGTTCCAAGATCTGTCCTCACTTCAGGTCCTGAAGCTAAGTTATAACAAGCTGAGGGAGATCTCAGCAGAGAGCTTCTCAGGCCTGTCCTCACTGCTGCGCCTCCACCTGGATCACAACCAGCTGCAGTTCCTGCACCCCCAGGCCCTGCTCCACCTCCCCAACCTCAGACTGATCCGACTGCAGGGGAACCGGCTCCACCAGCTGCACCCGCAGGCCTTCTGCACTCTGTCCCTACTGCAGACATTCTGCTACTCCACCCTCAGGCATCTGGATGTGTCCAACAACAGTCTAACTATCCTGCCTAGGGACACACTGAGAACTGCCCCTCTTCTGGAGTCCCTGGCTCTGCAGGCCAACCCTTGGACCTGCGATTGCAGCATGGCTTGGATACAGGCCTGGAGCATCTCTCACCCAGggGTGTTGAAATGTCCGGGGCCGCATTGCCTGGTCTGTGCCTCACCCAAACACATGAAGGGTCGTGGCCTTTTGCAGCAGAAAGACCTATCCTGCACCTCGCCTGTCATCTCCACCAATCCCAGAACCTCATCTCAGGAGGATGGCGAAGTTCAACCAATAGAAACCTTTAGAGAGGCTTTAGGCAACGCCTCCCTGGGGATGTCTGACCAACAGGGGAATGCTGTTGATCTGAAGTGTAACATCACACACTCCTCACAGACTCCTGACATTACCCCACCacacctttcctcctcctccatccccatctccctctccctggacTGTGGGGTGGATGGGCATGGCTATGAGAGGCTGTGGAGGCTGCTGGCCTACTACAGTGAGACGCCTGTCAGGCTTCAAAGAGAAATAATGTTGAGTAAAGCCCCAAGACTTGCCTACAGgtacagacagacagcagagaaggAGGGCTACTACCATACAGGGGTCAGGGCCAGTATTCAAGCACAGCCTGCCTGGTTACTGCAGCCCCATGTCAGTCTAGAGCTCAACAGAGCTCAGTCCAGCGCCCACAGGGTTAAACTGACCCTGTCCACCCTGGTGTCTGCTCCCCCAGACCCCCCATCCCCACACTCCTGGGTCCTCATCCAGACCAACCACACCCACACAGCTTTTACTGCAGCTGCAGAGAGACAGATccacctgccctgccctgtcctcagCTCTATTGGAGACCTAAGTTCTGGAGACCACAGGCTCCAATGGGTTTTCCCAGATGGTTCAACAGTCTCCTCTCCCTACCGCAGCTCAGATGGTAGGGTCCGGGTGTCTGGCCAGGGGCTGGTCCTGCAGAGAGTGTATCACTCTGATGCTGGACTGTACTATTGCGTGGCCCGGGCGGGGGGAGATGTTGATGTCCTCCCCCTCCGTCTGGCGGTGGTAGAATCATCCAATCCTCTCCCAGGGGAGGAGCTAGGCCCGGCTGTGACTGGATTGGTTGGAGACCCTGTCAGTCTGCCGTGTGAGGCCTCTGGTACACCGAGGGTTGAGGTGAACTGGGTTCTTCCTGGCGGGAGAGTGGTAGGGAGTAGGAacgaggggaggagaaaggacgAGGCAGGGGTTACTGTCTTGGCCAACGGTACCCTGTCTCTCCCCATCCCTGCGCTGGGAGATGCAGGCCTGTACCGGTGTCTAGCGGTGAACCAGTACGGTGCTGactctctctccaccagactgACGCTCACCCCGCGTCCTTCTGACACCTCATCACGTATGAGATATCCCATGAGGCCACCTTCTGTGGCGGGGGTGTCCAAAAGGGTACGAGCCCCTCTAGGGGGTGAGGAGATTGAAGGGGGGGGGTCAGGAGATGATGAGGGGGAGAACATACTGCCCACCAGGGCAGGTTACAACAGGACATGGCGTCCCCCCATCAGATCCCACATGGTGAGGGTGGAGGGAAGCAGACCACCCCAAAAGGGCAAGAAGCCCTTGAGGAGAGGCTTCCCTGTGGAGCAGAGGAGGAACAGGTTGGAGGGTCGGCGGAGCTTTAACCTGGCCAAGCACAAAATAGACCCTCAGAAATGGGCCGACCTGCTGACTAAGATACGTGAAAGGACTGCCCCTAAAATCACAGACTCCCTGTATGTACCACCCCCAACAAGAGCACATACTACCACCTCAGCCCCAACTGAAGCACAGACAACCACCTCAACCCGAACTGAAGCACAGACAACCACCTCAGCCCCAACTGAAGCACAGACAACCACCTCAACCCCAACTGAAGCACAGACAACCACCTCAGCCCCAACTGAAGCACAGACAACCACCTCTATCCCAACTAGAGCACAGTCAACCAGAATACAGACAAATAGCAGACATACAGAAAGCAATCACACAACCAGAACAAATCCAGGCAGCATACAGCCAGAAAGTACACAGtcagacagaatacagacagagagaatacagACAAGTAAAACACAGACAACCAGAATACATACAGACACGACATTACCAAACGGCACACCAGAGGTAAGCGTGGGAAGAAACTCTGATCAACGTCTTGTATTGGACTCAGAGGCTGATACCTCAAAGAGTTCTTCCATAGATGTCCTCAGTCTACAGGAAGAGTGGTTAAACCTCACCCATACATCACTAATCCCAGATCTGCTAACAAAGGATAGAGTGGCCCCAGAGACACCAAACACTTCAGATCCGAGCAATAACTTCCCCCAGAAACCTaagtcaaacacagacacagagacagggacagaaacagagacagggggTTCTCTTAAAAGCACAAAGCCAACCTCCAATGTCAATTGCACTAGCgcagaggaaaggagacagaGTGTTATCCCTGTACGGACTacaggtgagggggagaggactCGAACAACAAACTCTGGAAAGGTAATGTTCTCCAACTCTGTTCCGTCGCGACCCAGAAGCCCCTGGAATGCCAGCAATAGGCCTGGCCAGAGGAGACGCATCAACAGACTCAGAGGACGACCCATGCCCCGCCAAAGCGCTCCAGGTCCAACCTCCCCTCTCCAGAATAACTTAAGTCCCACTACCACCAGAGCAGCGCTTACAAAGCCCAGGAAACTGACAGCACCTGCTACAACCATTACTAtaagcactactactactattactactactactactactccatcCTTAACTAGGATCACTGCTCCATCAAGCACATCTGTCTCCCCCCCTGCCTTCCTTTCTGCCTCGCCCCCTTCGCCccagacatacacagacagggTGACTCACTTAACAAACACTGCTGCTCGGCTCCCTGACAGGTCCCAAGcgactatcacacacacacgcacacacactagcacactcATAGGCAAACATACACCCAcagtcactcacagtcacacagaaAAACAGAGTTATGCTATAACAGAGGGTCAGGTCGGGGCCACTCTAAAAGAACAGGATCCATCTGTCTTCAACCAACACAACCCAGAGGATATCAAAGCAACTACCACTCGGTCTGGAACCACACCAGGTGGAACAACACCTACTGGTACTGAGAAAGAACCCAGTGAGATAGAATCCAGTGAGATAGAACCACTCTACCCAGAAACCAAGGAAGAACTCAGTGAGATAGGACCACCAGCAACTGAAAAAGAACCCACTGAGATAGAACCACCAGCAACTGATGAAGAAGAACCCAGTGAGATAGAACCATCAGCAACTGATCAAGAACCCAGTGAGATAGAACCACCAGCAACTGATGAAGAACCCAGTGAGATAGAAGCACCAGCAACTGATGAAGAAGAACCCAGTGAGATAGAACCACCAGCAACTGATGAAGAACCCAGTGAGATAGAACCACTTTACCCAATTACTGAAGAAGAACCCAATAAGATAGAACCAGTCTATCTAGCACCTGATGAACCAGAGGAGAGACAGCCAGAGTCAGAAATAGACAGCTCTTTTTCATCTACAAAACAACTACTGCCCCCAACTACAGCTAATACAGCAGCTATCACTGCTTCAGCCATCACCTCCTCTACAGTCATCACCTTTATTAGAAGaactaccactataactattcctacaactactgctactattcctacaactactgctactattcctacaactactaccactatacctacaactactaccactactgctactattcctacaactactactactatacctacaactactaccactattcctacaactactaccactattcctacaactactactactattcccactactactaccactcttaCTAGTACAATAGTCTGGAGGAACCCAGGAGTaaactccatcccagactcacATGGTAGTCGCTACCGCCCCCCATCTTACCCCAGCTACTCACAACACTCCAGCAGCCGGCACCCTTATGTTATCACTAGGCCTGACCCAGTGAGAACTCCACTTCAAACGCCACCCCCTATAAAACACACACCCTCTCTACCACACCCTATCAAGCCCAAACTTCTTCTCCCAGACATTTTAGAGATCCCTTCCTCTGTAGTCCCCACCACCAGAGCTCCCTCCAGCTCCCCAAAGACCTCCCCACCCACCACAGACAGTCAGGCTGGACTCAACCCTGAGTCCACCCTTCCTCATTCCCCTCCCGCGTCTCCAGCCCATAGTGTGACTGCCCAACGTCCCCCTCAGACCACCGTCTTGCGTGTCCGGCCCCGTATCGCTCCCCCTCACATGCGCCCCATGTCTGTCCCAGCTGAGATTGATGCCCTCCTGCCCTGCGAGGCCATTGGACAGCCTCCTCCAACAATCACCTGGACCAAGGTCTCCACAGGAGCTGTGATGTCACTGGACTACAAGGCAGAGCGTTCCCAGGTCCTACCCAACGGAACCTTTCTCATCCGGAGCGTGCAGGTCCAGGACCAGGGGACATATATCTGCAGCGCACAGAACTCTGTGGGCCTGGACCGTGCCATGGTGACCCTGGAGGTCTGGTCCCACCCACCCCGGATTCAGCTACCCAACCACAGAGATGCAACGGTGCACCAGGGGGGTGAAGTGAGGTTAGAGTGTCGGGCTCAGGGGTTGCCGGTTCCTCTGCTGTCCTGGGTGCTACCTGACCTCTCcgtcctaacccctgaccctaaccccaaccctgccCTTGGAACTCACCCCCGGGTGTCTATATTCCCTAATGGTACTCTGCGTATCTTGGTGGCCGGCCCAGCAGACAGAGGACTGTATCGCTGTGTAGCCTCCAACCTAGCAGGGGCTGGCAGTCTGTCAGTCCGACTCCatgtgtcctctcttcctccagccATCCAGGAGCCCAGAGAGGAGAAGGTAACCCGGCCCGCTGGTTTGCCTCTCTACGCCCAATGCTCTGCCCGGGgagctccccctccctccatccgctGGAGGACACCTGACGGCACCTTTCTGCTCCCCTCTCAATTCCTCAACGGGAACCTGTTTGTCCTCCCCAATGCCACCTTGTTGATACGCAAGCTAGCCACTAAGGACTCTGGGAGCTACGAGTGCCTGGCGACTAATGCGGTGGGCGGGGATAAGAGGACGGTGAGGGTGGAGGTGactggagatggaggaggaggagaagttgTCTCCATGGATAAAATGACCTTCTCTTCCATCAACAGTAAATTTGatcttcccccctcctcccccgtccttaaccctcccctcccaccctcctcccccctcagtaAGGCTAggatcctctccacctctccatccagTTCTATAGTCATATATGGTGAATCTCTGCTCCTTTACTGTTCAGCAACCGGCAACCCAGAGCCTAGAGTGGTCTGGAGGGTACCTGGCAAGAAACTAGTGGATGCCCGTTACAGTTTTGACAAGAGGATAAAGGTGCACAGTAATGGAACGCTGTATATCCAGTCCGTGACGGAGAAAGACGGGGGGGACTATTTATGTGTCGCGCGAAATAAGATGGCTGATGACTTCCGCCTCCTCCAGGTCACCGTGGCAACAAAGCCTGCTAAGATTGAGCCAAAGCAGCCATCAAATCAGAAGGTGGTATCGTACGGAGCAGCTCTAAAGGTAGACTGTCTGGCGACCGGCCAGCCCGACCCCGCGGTAAGATGGAGCCTCCCGGATGGAACCTCAGTGAAAAGTGTCCTGTTgcaggtggaagagagagggaggcgcAGCCGGCGACTGGTGGTTTTTGACAATGGAACACTGTTCCTCCCCTCGgtggggatgggggaggagggggagtatGTTTGCCACGCTGAGAACCATGGGGGGAGGGACACTATGAGTGTGATGGTCAAAGTCCTCGcctcacctccctccttccccagtACCAAATATGAGGTCATCAAGGTGCAACAAGGGGGCACAGTGGCTCTGAACTGTGGGGCTAAAGGAGAGCCTGTCCCTACGATCACATGGCTCTCTCCAATGAATCGTGTCCTCCCAGTGGAAACATCAGGGCCGGTTGTGGTGCAGCAAGATGGGTCCTTGGTGATCCAGGGGGCTAGAGGGGCTGACGGAGGAAACTACACCTGCCGAGCCAGCAATGCTGCTGGGAAGAGGAGCAAGGTGATGGGGGTGGAGGTGATGGTGACACAACCCAGCTTCACTCTCAATGGGGCTGGGGGTGGGATCaatggggcagacagacagatagctgtTGTTAGTGGTAGTGGACTGAGTGCTGTGATCTCCATCAGTCAGTCTGCAGGGAGGGATCATAGGGTCAGTGCAGGTAATTGTGTCAGTAATAATGGAGACTGTAAAGTAGGGGACCAAAGGGTCTCAGCAGTTAGAGGCCAGACAGTTCTTCTGCCATGTCCATCCCAGGGCTTCCCTCTCCCCCGCCTGGCCTGGTTGCTGCCCGGTAACGGGGTTCTCCCGGTGCCCTACTATGGCAGCAGACTCACCGTGCACCGGAATGGAACCCTGGAGCTGAGGGGGGTGAGGGCAAGCGACTCCGGCATGCTGGTGTGTGTCAATCGTGGCGAGAGGGGTGAGGCTCGGATAATGGTACACCTGGAGGTCTCAGACACAAAGGACACACCTCACTCCAGAGGCCCAGTGACCACCGAGAAACCTTTCCCAGTAGGCCCAGTTAGCAAAGAGCAACCTCGCCCAGTAGGCCCAGAACAACCTCATCCAGTAGTCCCAATCAGCAGAGAGAAACTTCGCTCAGGAGgcccagacagagaggagacacctCGCCACAGAGGCCCAGTGACCATAGAGAAATCTCGCCAGGAGACACCTCGCCCTACAAGCCCAGTCACCAATGAGAAACCTCACTTAGGAGGCCCAGTCAGCACAGAGAACCCTCTGCCAGGAGTCCCAGTCCAAGGGGACACACCTCACCCAAGAGGCCCAGTGCCAGAGGCAGGGAGGAGTGTTGTCCTGGAAAGGAAGCCTGTGGTCACCAGCATATCAGGCTCTCTGGTCAGCATCATCAACGGAGACAATCTACAGCTACCCTgcccccagacagacagccccAGTCAGGGTTCCAGCCAGACAGAGTCTCTGACCTGGCAGTTGCCAAGCGGGGTGGTCGTGTCTCGGGGCCAGGCGGCAGGGACGGGTCGGTACTCAGTCCTGGATGACGGGACTCTGACGGTGCAGCAGGTATCTGTGTTTGACAGGGGGACCTACTCCTGCCGATCCATCAATCAGGATACATCATCTATCCTGACAGTTCCAGTGATTGTCATCGCCTACCCCCCTCGCATCACCAACGGACCCCCTCCCCTCACCTACACCCGTCCTGGTGTTGCCGTTCAGCTAACCTGCTACGTCATAGCAACCCCCAGAGCGACCATCACCTGGGAGATGCCGGACCAATCCCAGCTCAGGGTCACAGGTCAGGCCCGTCTCTATGGCAACCGGTACCTGAGTCCTCAGGGTTCCCTGGTGATCCAGAACCCGACCAGCAGAGACACAGGGTTCTACCGTTGTTCTGCACGGAACGTCATCGGAACTGACACCAAGGCCTCTTATCTACATGTgatctaacagaacacacacatcatTTTTGCCCAAAGAAACTGCAAAGTTGAGTGTAGAAGATACTGTTCAACTAAATACTGAGGTGTTGATTAAAGATTGTAAATAGAGATAAAAATAAACACATGCATCTTACAGCCAGAGTGTGTTAAAGATGTACATGAAATCAGCAGCTGAGAAGCACCAACATCCATCATCAATAAATAAAGTGTCAACACAAACTATACCAGGCTTTAAGAGCATCAGCTCTCAAAACACAGAGACAATCTACAGCTACCCTgcccccagacagacagccccAGTCATGCAATACAACACATTCAGCTCTGTATCACAACCTGCATGTTTACGTCAACCTGCCCTATTTATCTTGTTGTATAGTTATGTACTGTTGAGCAGAGCAAATGTTTGATAGTAGTCACAGAACTGCTCCAGTGATAGTTTTGTGGAGCCTCAGGGGTCTGCAGCTCTCTGTGTCTGCAGCTCTCTGTGTCTGCAGCTCTCTGTGTCTGCAGCTCTCCAACCCTGCAACCTCGACCACTCTTCCAGTCATAGGCTATACATACGTCCCAGATCATGTCAAATAAACACAACAGTTACCAAGTCTTTGAAGATGGTATTTGTAGTAATTACATATGTTTCATATAGAGTAGCATAGATTTTTGTGTGGCTCCAGTGTTACATTAAGTATGTGTAATATCCATGTGAAAGCTGATATCATTCATGTTTTCATTTCATTTAAATTATTTGTCTGTAAAGACTGTGATGTAAAGTGGTTATGTTGTGCCTCTTGTCATAAAGAGagagatgtactgtatatctaatcTCTCAATAGCCTTTTTAAGTTATGCTTTATTTTCAACTGCTTTGTTTGATAAATAAAAGAGAAAAGGAATTCAGTCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2058501 lncRNA downstream 81389 30211498 ~ 30211721 (-) True G1798813
TU2058498 lncRNA downstream 88739 30204075 ~ 30204371 (-) True G1798810
TU2058497 lncRNA downstream 89824 30201041 ~ 30203286 (-) True G1798809
TU2058478 lncRNA downstream 122403 30170428 ~ 30170707 (-) True G1798790
TU2058477 lncRNA downstream 122989 30169913 ~ 30170121 (-) True G1798789
TU2058554 lncRNA upstream 36686 30359238 ~ 30359802 (-) True G1798864
TU2058558 lncRNA upstream 80656 30403208 ~ 30404719 (-) True si:dkey-67c22.2
TU2058609 lncRNA upstream 103021 30425573 ~ 30425834 (-) True G1798910
TU2058566 lncRNA upstream 128145 30450697 ~ 30490914 (-) True G1798870
TU2058564 lncRNA upstream 164437 30486989 ~ 30519039 (-) False G1798869
XM_021579461.2 mRNA downstream 297464 29940139 ~ 29995646 (-) True LOC110501718
XM_036959070.1 mRNA downstream 299470 29940139 ~ 29993640 (-) False LOC110501718
XM_021579462.2 mRNA downstream 299471 29940139 ~ 29993639 (-) False LOC110501718
NM_001124646.1 mRNA downstream 416552 29873260 ~ 29876558 (-) True pou1f1
XM_021579457.2 mRNA downstream 446654 29835498 ~ 29846456 (-) False LOC110501714
XM_021579473.2 mRNA upstream 42053 30364605 ~ 30382857 (-) True LOC110501725
XM_021579476.2 mRNA upstream 76623 30399175 ~ 30402935 (-) False mab21l3
XM_036959096.1 mRNA upstream 76623 30399175 ~ 30402935 (-) False mab21l3
XR_005038817.1 mRNA upstream 76886 30399438 ~ 30402064 (-) False mab21l3
XR_005038818.1 mRNA upstream 76886 30399438 ~ 30402064 (-) True mab21l3
TU2058468 other downstream 132424 30160234 ~ 30160686 (-) True G1798781
TU2058411 other downstream 221346 30071075 ~ 30071764 (-) True G1798732
TU2057553 other downstream 314575 29971558 ~ 29978535 (-) True G1797936
TU2057451 other downstream 449930 29838277 ~ 29843180 (-) True LOC110501714
TU2057122 other downstream 632163 29659467 ~ 29660947 (-) True G1797556
TU2058565 other upstream 164437 30486989 ~ 30519672 (-) True G1798869
TU2058911 other upstream 638535 30961087 ~ 30963534 (-) False LOC110502090
TU2058912 other upstream 638535 30961087 ~ 30963534 (-) True LOC110502090
TU2058850 other upstream 654342 30976894 ~ 30995302 (-) True G1799132
TU2058841 other upstream 716641 31039193 ~ 31042216 (-) True LOC110501748

Expression Profile