RNA id: XM_021579473.2


Basic Information

Item Value
RNA id XM_021579473.2
length 5084
RNA type mRNA
GC content 0.51
exon number 9
gene id LOC110501725
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 30364605 ~ 30382857 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTAAGATGAGCTGTGCTGTGATTACTGATAGCCTGTCccgtaagtgtgtgtttgtgtgtgtgtccaagctGATGAGGGTGCAGGAATCTATTGGCTGCAGGCTCAATTCAACACTTTCCATTAGCATCttttgagagggagagacagagaaagaaagacagagaggggaagggagagggagatgtgAACATCGTGTTTTTGTTATTCATTAACAATAACCACGTCTAGTACCGTATTCAGTTGTGGGGTTCGGACAATAAATACATAGGCTATTCCCCGGAGCTCACGGCGGAATATACCCCAGGCACGTCGCTGGCGCACGAGGCTCTGCAGCCCAGTGACACACGGTCCCGGGATTTCTCTCACcgctctcctgttctctctctccttcttgtcTTTTCTTCGCGGTGAAAGATGAAATGCTCTGCCagctgacatttttttttttttaccgcaGCAGCCACATGAACAGACCAATGGAGCTATGACGTGTGTATCGgcagAGCAGTGTGACTGTGCGAAGAGAACTGGGAGGTGAGTGGCTGACCCAGGGAGGAGAAAGACATATTCTGAGACCATCGCTGTTTGAGTGTGTGCTAGACTCACAGTCGGAGTCCTGATCTAAACCAAACACCAACGCTCCCACCGTCCCTCCCACATGTCTCCCCCGactccccccatccctctcctctttctcccctcctctctactgtgTGTCCTCTCCATGCTCCTGTCCCTGTCCAAACTGAGGGgcatcctcccccctctcctctcccttatcCTGTCCCTCCCCCCTGCTGCTAGCCAGTCAGTCATCACCACGTCCCAGGGCAGACTGAGGGGTCAGTTGACCCCCATGCCCTCTGACCTGCTGGGCCCTGTGGTCCAGTACCTTGGGGTCCCCTACGCCCGCCCCCCCACCGGGGAGAGACGCTTCCAGCCCCCTGAGCCCTCCCTGTCCTGGCCGGGGGTGAGAAACGCCACCCAGTTCTCCCCCGTCTGCCCCCAGCCTGTAGAGGAACACAGCTTGCTGACAGAGATGTTACCTCTCTGGTACTCTGCCAACCTGGACATAGCCAGCGCATACCTGGCACAGCAGAGTGAAGACTGTCTCTACCTCAATATATACGTCCCTACTGAGGAAGacaTCCATGATGAGGGCGGTCTGCGGCCGGTGATGGTGTATGTCCACGGAGGTTCCTACTCAGAGGGGAGCGGCAGCATGATGGACGGCAGTGTCCTGGCTAGCTATGGAAATGTCATCGTCATCACAATCAACTACAGACTGGGAGTACTGGGTTTCCTCAGTACGGGTGACCAGGCAGCTAAAGGCAACTATGGTCTGTTGGACCAGATCCAGGCTCTGCGCTGGGTGAAGGAGAACATTGCTGCATTCAGCGGAGACCCAGACAGAGTCACTGTGTTTGGCTCTGGGGCTGGAGCCTCCTGTGTCAGCCTGCTTACTCTGTCCCACTACTCTGAGGATCTGTTCCAGAAGGCGATCATCCAGAGTGGGACAGCCCTGTCCAGCTGGGCGGTCAACTACCAGCCAGGGAAGTATGCAAATCTGCTGGGGGACAAGGTGGGCTGCAGCCTGGAGGACTCATCAGAGCTAATCGTCTGTCTGCAGGGGAAGACCTACCAGGAGCTGCTGGAACAGAACATCACCCCAGCTAAATACCACACCGCCTTCGGACCTGTCATCGACGGTGATGTCATCCCTGATGACCCCCAGATACTCATGGAGCAGGGGGAGTTCCTCAACTATGACATCATGCTGGGTGTGAACCAGGGGGAGGGGCTTAAGTTCGTTGACGGGATGGTCAATGGGGAGGATGGCGTCTCCGGCGACGATTTTGACTTTGCCGTGTCAGACTTCGTGGACAGTCTCTACGGCTACCCGGAGGGGAAGGACACGTTGAGAGAGAGCATCAAGTTCATGTACACAGACTGGGCCGACCGGGAGAACCCTGAAACCCGGCGGAAGACGCTAGTCGCTCTGTTCACTGATCACCAGTGGGTGGCGCCGGCGGTGGCCACAGCAGACCTCCACGCCCAGTATGGATCGCCAACATACTTCTACTCCTTCTACCACCACTGTCAGAGTGACGTGTCGCCCGCCTGGGCTGACTCCGCCCATGGAGATGAGGTGCCGTATGTGTTCGGTCTGCCGCTGATCGGACCCACGGACCTCTTCAACTGTAACTTCTCTAAAAACGACGTGATGCTCAGCGCCGTGGTCATGACATACTGGACCAACTTCGCCAAGACAGGAGATCCTAACCAACCAGTGCCCCAGGACACCAAGTTCATCCACACCAAACCCAACCGCTTTGAGGAGGTGGCCTGGGCCAAGTATACCCCCAAGGAACAGCTTTACCTGCACATCGGCCTGAAGCCACGCGTCAGAGACCACTACAGAGCCACCAAGACAGCGTTCTGGCTGCAGCTGGTTCCCCACCTCCACAACATCAACGAGTTGCTGCAGTACGTGTCCTCTGCAACCCACAGCCCTCCCCAGGACACAACTCCTCACTCCTACACCAAGCGGCTGTCAAAAGGCCTGGGCTTGGGAAGCACGCGCCACCCCAACCCCCCGTCCACGCCCCAGGCTCCGGCACTGCAGGGGGAGGAGCTGCAGGTCCCCCACCCCGTCATGGAGGACTACTCCACTGAGCTGAGCGTTACCATCGCAGTGGGAGCCTCACTCCTCTTCCTCAACATCCTGGCCTTCGCTGCTCTGCTCTACAAGAAAGACAAGCGCAAGATGGAACATCGCAGGCCGCCACGCCCACCTCCACGCCATGATATCATCAATGCTGACATCACACACCAgctgcagggggaggggcttctgAAGCAGCTGGAGGCTGAGGCCCTGCATCAACACAACACCCTGGAGATACacgacacacacaacatacaccacACGCTGGAGGCTCTTGACACGCTGGACACACAGGACATCTACAACACTCTGGATACCCTGCGACTGACCTGTCCACCAGACTACACCCTGACCCTGAGACGCTCCCCTGACGATGTGCCCCTGATGACTCCCAGGTCTCTGCCCATGACCCCTGGCTCTCACCCCGCCACCCCCATGACCCCCATGACACCTGGATCTGTTGTGGGGATGCAGCCCATGCAGGGCTTTAGTCCTTACAGTAACACACACTTGCCCcatatgcacacgcacacacaccccaacacacacacacactccaccacaCGCGTATAaccacagacagagatggagcAGGACAGTTTCTCCAGTCCAACTAAGACAACGATCCAGTCTGCCGTGTTGCATGTGTAGAACACAGAGGGAGTGGAAGTGATGAAATCTGAGAGAGGGAGTAATGTGCATCAGTAAATGGAACATTATAAATGGGAACATCCAAAATGGCTGCCAATACATCATGCAAACAATGCTTGTCTATAAGCTGCATCAAAAATGGTCTGGGTTGCCGTGTGACTTGCTCTGAAGTGGTGCTTCTGGGTTGTGCAGATCAGATCAGACTACTGACTGAACCACTCTGGGAAAAACTTGAAGAACCAGTGAAATTTGAATGTAGAATTTTTCAATTGCAATGAAATCCTTCAGAGGCTCAACGTTCCCTGCAGCTCTGTGCTCAGCCTGGCCATAGATGTGGTCTGAAGgataggaacagacagacagtgtgaacAACAGACAGACGGGGAAAGATTCAGACTCTATTCCTGGCCTTTAGGTCAAAGGCCTCTGAAGGGTTCAACAATAACAACTTCAACAGTCCAAAGGTCACATCTACCAACCAGCAGTCTGTTCAAATATGTAAATAACTTGTAAACATGATGGAGAAAAGATTGTAAGATTTAAAGGTTTTACTGTTTTATCGCATCAAAATATGTTATTTAAGGCTTTAATTTGAGTTGATTATAAATGTATAGGTCCTCAGAACAAGATGTCATTTTACGCTTACTTCTGACatcttaaccctgaccctaatcctaaccctgatTATATCTATCCCCACCCTCTTCTCTGATCCGAGACTTGTACTTGGACATGGAACTGAGTCTGTCCttggccctctctctgtcatggtcCCTTACCTTTGTCCTTAGGCtaaaggcgtcagcatgcttTAGTTCGAATGAGGGTGCTCGCATAATCCCTTAAAATACCTTTGtttgaaaaatgaaaaataagcggcaatagtactgtttgtccattttgagatgccGTAGCCACTTCCCCGAAATAGTCAAGAAATCTTTCATTAATTTTGACGTTTTTTGTCAAGGAGATTTAATTCACGCAATttgacatctaactaagatgtatggtgcagtatttctcaagtgaaaaaatcTGCATCAGAACGAGTCGTTTCGAGTTGAATGACAACAGGCACTTCATTGAACAATTCCGACGagggggcgtagacttcggcttgCCTCGCGAAAAACATTTAGTGTGCCTGAACAGTTGAAAAAACCCTTGCCAaagtccaaaacaaacaaaaacattgcaAAGTGTTGTCATAATATATGTACAAACTGTTCTGAACTGTTCTggaagcatgcggacgccttAACCCCTGACCTGTAACCACTGACCCTGACTTCTAACCCTGATCCACATCCTAACCTCGACCCTCATCCTAACCTCAACCTGTCTATGAACCCTTATTTCAGTCCCATACCCTAGACCCCTTACCCGAAACGCTGACTTCTAACCCAGAAACTTAACTGATCAGTTGACCTGAAACCGGAATTCAATCATGCTGAAGTCTAAAATGTTACGATTGAATTCCGTCCCGACACATATTCTGCATTTGTGAGCTTTTTGAACCACAAAAGTAACCTAAATAATAtcatatactgtattgtatttaaAGAAAGCTGAAACAGTGGATCTGAAACCAGGAATCTTATTTGAAATGCTACCATAGGCTAGATTAGAAGATGTCTTTTTATATCATTATTTTCAGTTTATGCGTAAACGGATGGAAGGAGTCTTTGCTGTATGAGAACTTTCTGCTGCAttttgttaaataaaatatatctgTATTTTACCATTTATATGCttctcata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2058554 lncRNA downstream 4803 30359238 ~ 30359802 (-) True G1798864
TU2058512 lncRNA downstream 67685 30296663 ~ 30296920 (-) True G1798824
TU2058509 lncRNA downstream 70165 30293443 ~ 30294440 (-) True mxra5b
TU2058501 lncRNA downstream 152884 30211498 ~ 30211721 (-) True G1798813
TU2058498 lncRNA downstream 160234 30204075 ~ 30204371 (-) True G1798810
TU2058558 lncRNA upstream 20351 30403208 ~ 30404719 (-) True si:dkey-67c22.2
TU2058609 lncRNA upstream 42716 30425573 ~ 30425834 (-) True G1798910
TU2058566 lncRNA upstream 67840 30450697 ~ 30490914 (-) True G1798870
TU2058564 lncRNA upstream 104132 30486989 ~ 30519039 (-) False G1798869
TU2058571 lncRNA upstream 133476 30516333 ~ 30559449 (-) True G1798875
XM_036959589.1 mRNA downstream 42053 30293110 ~ 30322552 (-) False mxra5b
XM_021579461.2 mRNA downstream 368959 29940139 ~ 29995646 (-) True LOC110501718
XM_036959070.1 mRNA downstream 370965 29940139 ~ 29993640 (-) False LOC110501718
XM_021579462.2 mRNA downstream 370966 29940139 ~ 29993639 (-) False LOC110501718
NM_001124646.1 mRNA downstream 488047 29873260 ~ 29876558 (-) True pou1f1
XM_021579476.2 mRNA upstream 16318 30399175 ~ 30402935 (-) False mab21l3
XM_036959096.1 mRNA upstream 16318 30399175 ~ 30402935 (-) False mab21l3
XR_005038817.1 mRNA upstream 16581 30399438 ~ 30402064 (-) False mab21l3
XR_005038818.1 mRNA upstream 16581 30399438 ~ 30402064 (-) True mab21l3
XM_036959095.1 mRNA upstream 20345 30403202 ~ 30413824 (-) False si:dkey-67c22.2
TU2058468 other downstream 203919 30160234 ~ 30160686 (-) True G1798781
TU2058411 other downstream 292841 30071075 ~ 30071764 (-) True G1798732
TU2057553 other downstream 386070 29971558 ~ 29978535 (-) True G1797936
TU2057451 other downstream 521425 29838277 ~ 29843180 (-) True LOC110501714
TU2057122 other downstream 703658 29659467 ~ 29660947 (-) True G1797556
TU2058565 other upstream 104132 30486989 ~ 30519672 (-) True G1798869
TU2058911 other upstream 578230 30961087 ~ 30963534 (-) False LOC110502090
TU2058912 other upstream 578230 30961087 ~ 30963534 (-) True LOC110502090
TU2058850 other upstream 594037 30976894 ~ 30995302 (-) True G1799132
TU2058841 other upstream 656336 31039193 ~ 31042216 (-) True LOC110501748

Expression Profile