RNA id: XR_005038817.1


Basic Information

Item Value
RNA id XR_005038817.1
length 1772
RNA type mRNA
GC content 0.50
exon number 3
gene id mab21l3
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 30399175 ~ 30402935 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGGATATCATCAGCATGTGGCTCGTCAGTGGAGGTACTATTCTCTGACTGGCTCCATTCTCCCCACTCCTGTCCGCGAGCCAGAGAAACTCCACCAATGGCTGGAGCTGGAGAGCTTCACAAGCCCCGCCCAGGACTGGCAGGTGGGATATCATAGAGCAGTGAATATAGTTAGCCAGTTAAATGTCCTAAATATTCTTAAATAACACTATTTGGTGTGTATGTCTTTTACAGCAGTGGTCATTAGTCGATTTTCAAACATTTCTGTCGCCAACGACACAAACTTGCACTCCTATTTATATACAACTATTTATTGCGCAATTGGCAGTAGGTGCACTTTATTCAGAAGCCCTGCGTACTGGGTAGGCagagtgttcccattttgaaccgtTTAATTTGTCAAACTCCGCCTACCTTAATCACCAGGAGAGCTGTGGCTAAGTCAAGTACTCCTACTGCGCCGGCCAATCGAATAGCTTGAATCACAGTGCTGACCGCTTCCCCCTACCCCACAGCAAAGTTTGATACCGGCCTATGTGAGATTTGGTAACTTTTAGAAACCATGACCAGAGAGACTGTCGAAGAATACAGAAAAGAGCTGCTGtttgaGATGCCAAAGTGTGTGTTGAGGGAGACATTGTACCGGCCAAGGTGGTCAGTCTCTTCAGAGAACAACTAGAGACCGCCATACTGACCTGCAGCTTCAGTGGTGAGTGTGTGGCAGGGCAGGACAGGCCGTGGATTTGACTGATCAGATCTCCCACACACTGGAAAAGCTTTCTGTCACATTGAATACCTCTACAAgcaacatacacacacccacacactggcCACAGTGTTGATAGGTGTTGGGCCAGAGTAAAATCTATAAACTGACCGGGCCAAAGGCTTCCCTCGTAGCAAAGGTGCAAACACGCACACATTCTAAcctgatcgtgtgtgtgtgtgtgtgtgtgtgcgcgtgtgtgtgcgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagtgtgagcgAACGCAGGTAAGGTCAGCATCTTGGAGTCTGTGGGTTCGGTAGTGCGTGTTGCCATAGAGACGGTGGAGGGTGTGATGGAGGCAGAACTTGTTCCCACTGTGGAGCTGATCAACTATTGGCCGAAGAAGGCCCGCTGGCCCCGCCTTCTGCAGCGCTGGCCAACCACAGAGAGAGCTCGCTGCATCAAGGTCTCAGCTGGGAAACATGCTTTCTAACCCTTCTAACCTTCTACACCCTAACttactttctctctatctctccctctctccagtcgtTTGGGTTTAACCTCATGGCAACGTCTAATTACCACTGGCTGTTGTCGTTCTCACGGGCGGAGCAGGCATTGCTAGTGGCCGTTGATGAGGACGGTGGTTGCCGTAGGAAGTGTTACCGTGTTGTCAGACAGCTGAAGGAGGACACCTGGTGTCCCGGCACCAAGCCTGTCATCACAGCCTTCCACCTGCAGaCTCTGTTGTTCTGGTGCTGTGAGAAGTTTCCATGTGGGCGTGACTGGCGCTGTGTAAAGGAGTGTGTGCTGCGTGTAGCCAGGAAGCTGTTGAAGTGTGTGAGCCAGCGCTACCTGAGACACTACTTTGTCCGCTCCTACAACCTGCTGAAATACAGTAACACCACAGAGTTAGACCACACAGCCCAGAAGATCAATGACTTTATAGCCAACCCCAGCCTATATGTCCACTAAACACTGATTATTAACACCAATTCTAGCATGATGTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2058554 lncRNA downstream 39636 30359238 ~ 30359802 (-) True G1798864
TU2058512 lncRNA downstream 102518 30296663 ~ 30296920 (-) True G1798824
TU2058509 lncRNA downstream 104998 30293443 ~ 30294440 (-) True mxra5b
TU2058501 lncRNA downstream 187717 30211498 ~ 30211721 (-) True G1798813
TU2058498 lncRNA downstream 195067 30204075 ~ 30204371 (-) True G1798810
TU2058558 lncRNA upstream 1144 30403208 ~ 30404719 (-) True si:dkey-67c22.2
TU2058609 lncRNA upstream 23509 30425573 ~ 30425834 (-) True G1798910
TU2058566 lncRNA upstream 48633 30450697 ~ 30490914 (-) True G1798870
TU2058564 lncRNA upstream 84925 30486989 ~ 30519039 (-) False G1798869
TU2058571 lncRNA upstream 114269 30516333 ~ 30559449 (-) True G1798875
XM_021579473.2 mRNA downstream 16581 30364605 ~ 30382857 (-) True LOC110501725
XM_036959589.1 mRNA downstream 76886 30293110 ~ 30322552 (-) False mxra5b
XM_021579461.2 mRNA downstream 403792 29940139 ~ 29995646 (-) True LOC110501718
XM_036959070.1 mRNA downstream 405798 29940139 ~ 29993640 (-) False LOC110501718
XM_021579462.2 mRNA downstream 405799 29940139 ~ 29993639 (-) False LOC110501718
XM_036959095.1 mRNA upstream 1138 30403202 ~ 30413824 (-) False si:dkey-67c22.2
XM_036959094.1 mRNA upstream 1138 30403202 ~ 30414069 (-) False si:dkey-67c22.2
LOC110502089 mRNA upstream 54770 30456834 ~ 30459539 (-) True LOC110502089
XM_036959100.1 mRNA upstream 98587 30500651 ~ 30506167 (-) False LOC110501733
XM_036959099.1 mRNA upstream 98587 30500651 ~ 30506420 (-) True LOC110501733
TU2058468 other downstream 238752 30160234 ~ 30160686 (-) True G1798781
TU2058411 other downstream 327674 30071075 ~ 30071764 (-) True G1798732
TU2057553 other downstream 420903 29971558 ~ 29978535 (-) True G1797936
TU2057451 other downstream 556258 29838277 ~ 29843180 (-) True LOC110501714
TU2057122 other downstream 738491 29659467 ~ 29660947 (-) True G1797556
TU2058565 other upstream 84925 30486989 ~ 30519672 (-) True G1798869
TU2058911 other upstream 559023 30961087 ~ 30963534 (-) False LOC110502090
TU2058912 other upstream 559023 30961087 ~ 30963534 (-) True LOC110502090
TU2058850 other upstream 574830 30976894 ~ 30995302 (-) True G1799132
TU2058841 other upstream 637129 31039193 ~ 31042216 (-) True LOC110501748

Expression Profile