RNA id: LOC110502089


Basic Information

Item Value
RNA id LOC110502089
length 2154
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC110502089
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 30456834 ~ 30459539 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTTTCCATGTCGTAGATGACGTGTTCTTTCTCTCAACCTCTAATGTTACTGTTATGTTATGATTTACAGTGGCTTCCATAATGTATTTTTTAGGCATCATACCAGAAACACATCCAACCGGTTTTAGATTTATCATTGTTTGATGGCAAACATGAAGCCTTTGGGGATGTTTTCTGCAGGCTGAGGAGATTCTTGAGCAGTTCCGGAAGGAAAAGAGTCTAGAGAAGTATTCCATCCTGCAAGCTGACAAAAAAACTGACCAAAAATTTGAAAAAGTACAAAATATGGCATGGGATGTTATTTTCTGATTTAATTCAGGTTTCTGGTTGAAGTGACTTctcaaaataaatgtttgataGTTCTTGCACGAAGTCAACATAGATCTGGGATATTTAACAGTAGGTATGCAAGCTAAAGTTCAACCTAAAACTTGTGGTTTTCTCCAGAACATGGAAAATGTCAGGGGTTGTCTATTGACTCTGTatgagagagaacatgaagctaGAGTGTTTTCCTACCATAATATCTTAATTTGTACCATTCACAGGAGAAGGAGGGATCAGCTGTGCTGGAGCAGGAGAAGAAGGCTGCTGGAGAGAAACGGTTGGAGATGGAGGACGATCGCAGAAGCAAAGATGAGAAGTTGCAGCAGATGGAAGAGAAGATGAAGGAGGAGATGAAGCAACAGAAACGGGACTTCCACAGGGCCTTGGGGTGCAAGATGCAGGAGCAGAAGGATCTGCTGGAGAAGGGCCACAAGGAGAAGGCTGACTTAATGAGACAGGAGATAGAGGAGTTCAAGAATAGCAACAAACCTGAGAAGGAAGGATGTGGTTTCCTTGAGTCTACAGTCATGCCTGTTCTTCGATTTGGATTGGATGCTGCCAACACTTTCTTTCAATATACGCTCATGAAGGCTAAGATGGTCCAGGAGGCGAAGGAGGAGCCACAGGAGTTGGCACGAGCACTAGATAGCAAGCTCCATGAGCAGGAAAAGCTGATGGCTAATGGCTTCACAGAGAAAGAGGCAGCCATGAATGAGGAGATACAGAGCCTGAGAGAGAAGGAGGCCAAGCGCGAGGAGAAGGAAGAGCAGTCTCGTAACTTCAGAGCCATAGCACAAGGTGTCATGGAGAGTGTCAGCAATGGCTTAGGTCACTACTTTAACTATAAGAAAGCCTGTGAGCAACGCAAGGCGATTGTGTTCAAGGAGCACATGTCACTCAAGCAAGACTGCCACACCCAAACTCAAAACAAGAGCAGTTGGCAACTCTAAAGACACAACTCTGCCCAAAGTCAACACAGGTACAACTGGCAAAAGCCCTGGCTCAGAGGTCTAAAGGACTCACCAGAGATTGGTCAATGGTCCAGATCAGCAGCCACACCTTTCTCCAGTCTCAACATTAACCAGAAGAGCTACTAGGAAATAGTGCAACAGAAAGACTGCTGTGCAACAACAGTACAATGGGGCCAAACCAGCTGTCACTTCACAGAAGTCAGTACCTCAGTTTATAACCATTCTCATTCTGATATAATTGAATATTTCAAAGGTTATTACAGACCGTTCTTAGAATTGTAGTTAAGATTTGTGCTTTGTTTTTTCCTTGGATGTAGGGTCAAATAAATTAGCTTAACTTGTCTTGAAGTCAAATTTGGCTAGAATGGAACTGCTCATCTTCAATGCGCTTTTCACTTCAGGGTTGACCATTATCATGTTTTGTAATTGTTGTTTAAATAAACCTTGCTTCATCTCTATTTCTGCCGCCATTCtaaaatggcagcagttttacgggcgcccaaccaattgtatAATATTCTATTATGTGGGGGGttttcgcgttatttgtaacttattttgtacataatgtttctgcaaccgtatcttacgccagaaaagagcttctggatatcaggacagagatcactcacctcggattagacaaagatttctcCAAACACCCGGCAGGGCCGACATCCCAGTTATTcgcaagaggaagcgacgcaggtacagaggacgaAGAACCGGATGCCTCGTCAGGACCCGCAGAAGGCGagtaggaaagctgccgttactgtcaatattactcgccaacatgcaatcattggacaataaattagacgaggtacgatcacgaatatcctaccaacgggac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2058609 lncRNA downstream 31000 30425573 ~ 30425834 (-) True G1798910
TU2058558 lncRNA downstream 52115 30403208 ~ 30404719 (-) True si:dkey-67c22.2
TU2058554 lncRNA downstream 97032 30359238 ~ 30359802 (-) True G1798864
TU2058512 lncRNA downstream 159914 30296663 ~ 30296920 (-) True G1798824
TU2058509 lncRNA downstream 162394 30293443 ~ 30294440 (-) True mxra5b
TU2058564 lncRNA upstream 27450 30486989 ~ 30519039 (-) False G1798869
TU2058571 lncRNA upstream 56794 30516333 ~ 30559449 (-) True G1798875
TU2058688 lncRNA upstream 150396 30609935 ~ 30610365 (-) True G1798989
TU2058838 lncRNA upstream 481787 30941326 ~ 30943931 (-) False G1799126
TU2058836 lncRNA upstream 482747 30942286 ~ 30943931 (-) True G1799126
XM_036959094.1 mRNA downstream 42765 30403202 ~ 30414069 (-) False si:dkey-67c22.2
XM_036959095.1 mRNA downstream 43010 30403202 ~ 30413824 (-) False si:dkey-67c22.2
XM_021579476.2 mRNA downstream 53899 30399175 ~ 30402935 (-) False mab21l3
XM_036959096.1 mRNA downstream 53899 30399175 ~ 30402935 (-) False mab21l3
XR_005038817.1 mRNA downstream 54770 30399438 ~ 30402064 (-) False mab21l3
XM_036959100.1 mRNA upstream 41112 30500651 ~ 30506167 (-) False LOC110501733
XM_036959099.1 mRNA upstream 41112 30500651 ~ 30506420 (-) True LOC110501733
XM_036959102.1 mRNA upstream 82744 30542283 ~ 30551963 (-) False LOC110501729
XM_036959101.1 mRNA upstream 82744 30542283 ~ 30552050 (-) False LOC110501729
XM_036959103.1 mRNA upstream 84357 30543896 ~ 30552051 (-) True LOC110501729
TU2058468 other downstream 296148 30160234 ~ 30160686 (-) True G1798781
TU2058411 other downstream 385070 30071075 ~ 30071764 (-) True G1798732
TU2057553 other downstream 478299 29971558 ~ 29978535 (-) True G1797936
TU2057451 other downstream 613654 29838277 ~ 29843180 (-) True LOC110501714
TU2057122 other downstream 795887 29659467 ~ 29660947 (-) True G1797556
TU2058565 other upstream 27450 30486989 ~ 30519672 (-) True G1798869
TU2058911 other upstream 501548 30961087 ~ 30963534 (-) False LOC110502090
TU2058912 other upstream 501548 30961087 ~ 30963534 (-) True LOC110502090
TU2058850 other upstream 517355 30976894 ~ 30995302 (-) True G1799132
TU2058841 other upstream 579654 31039193 ~ 31042216 (-) True LOC110501748

Expression Profile