RNA id: LOC110502090


Basic Information

Item Value
RNA id LOC110502090
length 1981
RNA type mRNA
GC content 0.53
exon number 6
gene id LOC110502090
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 30960714 ~ 30963603 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACCAATCACATACACTCACCTCAAAAGACAGCGCTACAACTACTTCTGGTGTCAAAGTTTGTGTTGTTAAGATGGCTGGCCATGATCATCATCATCTGTCTCTGTGCTCATGCGACTTCATCAGATTAGTATGGGCAATCGTGCTGCCACGCATGTATCTGAACTTGGTGCTGACGCTGCTTCTGTTTCTACTGGCCATGGGTGTCCGAATATGGATGCAGAGGAGTCGGAAAGCACACCTGGCTCAGGACAGCTCCCCAACGGTGGCCTTTTCCCACCCCTACTGCAATGCAGAAGGGGGCGGAGAGCGTGTGCCCTCAGAGCGCTTCAGAATAGATACCCACACATCTCTGTTGTTGTGTACACCGGTGACCAAGGTGTCATGGGGGAATAGATTCTGGAGGGTGCCACGACACTGATTCAACATCAGCTTGCCTCGTCCAGTGACTTTCATATTCCTGAAGAACCATCTCTTGCTTGAGGATAGCTCCTACCCCACACTTCACCCTGCTGGGGCAGAGCATGGACACCATGTTCCTGGGCTGGGAGGCTCTCACATCCTTTATACCAGACCTCTATATGGACTCCATGGGCTATGCCTTCACTCTGCCTATTTTCAGCTACCTGGGAGGACGCAGGGTGGGCAGCTATGTGCACTTCTCCACCCTCAGTACTGACATGCTTTCTGTGGTGAGAGGAACCTCAGGTCAGTTCAACAATGCAGACTACATCTCTACTAACCCTGTCCTTAGTATGGCTAAGGTGATGTACTACTGTGCCTTCACTCTGATCTACGGCCCAACTCAACCTGGACACTGGGCCACATCCCGGCTCTGTGGCGCACCCCCAGCCGCACCGGCGTGGTCTACCCGCCCTGTGACGTCCGTTCCTTCATTGACATGCCATTGGAGGATGAGGTGAAAGGGGAGGTTATCAGAGACAGGAAGTGCCATTCGATAGTGTCCGTGGGTCAGTTCTGACCAGAAAAGACCACCGGCTACAGATAAGGGCATTTCAGAAGCTTCTGGAGAGGAAAGGGACGAGGGCGGGAGTCTCAGAGACTGGTGTTGATTGGTTGCTGCCATAACCAGGAGAAAGAGGATAGAGTGCTGATGCTAAGGGTTTGTGCCAGGAGCTGGGTGTGACTGACAGGGTGGAGTTTAAACTCAAAGCTTCCTTTCAGGAGTTAAAGAGGGAGCTGATGGATGCCACCATTGGCATGCACACTATGTGGAACTAGCATTTTGGTTTAGGTGTAGTAGAATGTATGGCTGCAGGGACTCCTGGTTCACAAGTCCGGCTGCCCCAAACTGGACATCGTGGTTCCCTACGAGGGTGGACAGACTGGCTTCCTGGCCGACAGTGAGGAGAGTTACGCCACCGCCATGGAGACCATCCTGACCCTGTCGTCGGCGGCACGATGAAGATCCGGCGGGACACCCGGCGGTCCGTTCACCGTTTCTCAAACCATGAGTTTGACTCTAGCTTCCTGTCTTCCATGGAACCTCTGATGGGAACACAGCAGCGATGAAGGAAGACCAATCACTCCCACCTCCGACTGAAGCCCCACCCCTCTGCAGCACTCACAGGCCTGATTGGTCGAATCAATTTGAATGTTGGAACGCTGATGGTCTATCGGAGCTTTGCTGGCTTTATTAATAAATAAGGAGGCTTATCTTACCTGCTCTGTCTTGATAGAGTTACAGTGAAGTGACGTGGTAGACATTCTATTTATACAGTTGCACTCAAAGCATTTGATCCTGAATAGAGGTTTCTGTACTGGTTTCACCTGCGAAGAATGACCAAATATCATTGTGCTATTTTTTTCTGTGTGATTTTTATTCCCGGCCTCTGTAAGGGACCATGGCTCAGAAATGTTACTGATTTAATGTGCAGAAAATGTAAATATACAAACAATGTTTTATTTTGGAAAAGTACATGTATTGTTCATATGTCTGATGAATAAAACATTCAACCTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2058909 lncRNA downstream 3725 30956740 ~ 30956989 (-) True G1799189
TU2058838 lncRNA downstream 16783 30941326 ~ 30943931 (-) False G1799126
TU2058836 lncRNA downstream 16783 30942286 ~ 30943931 (-) True G1799126
TU2058688 lncRNA downstream 350349 30609935 ~ 30610365 (-) True G1798989
TU2058571 lncRNA downstream 401265 30516333 ~ 30559449 (-) True G1798875
TU2058915 lncRNA upstream 1124 30964727 ~ 30964949 (-) True G1799194
TU2058898 lncRNA upstream 1863 30965466 ~ 30965815 (-) True LOC110501745
TU2058916 lncRNA upstream 6207 30969810 ~ 30970040 (-) True G1799195
TU2058918 lncRNA upstream 9257 30972860 ~ 30973255 (-) True G1799197
TU2058920 lncRNA upstream 11274 30974877 ~ 30975179 (-) True G1799199
XM_021579493.2 mRNA downstream 47138 30908672 ~ 30913576 (-) True LOC110501740
XM_021579490.2 mRNA downstream 52193 30888653 ~ 30908521 (-) True LOC110501738
XM_021579491.2 mRNA downstream 52398 30888653 ~ 30908316 (-) False LOC110501738
XM_021579489.2 mRNA downstream 201401 30732318 ~ 30759313 (-) True htr2aa
XM_021579488.2 mRNA downstream 258022 30695004 ~ 30702692 (-) True esd
XR_002470245.2 mRNA upstream 1665 30965268 ~ 30967749 (-) False LOC110501745
XR_005038819.1 mRNA upstream 1665 30965268 ~ 30967749 (-) False LOC110501745
XM_021579497.2 mRNA upstream 31721 30995324 ~ 30999592 (-) False LOC110501744
XM_021579498.2 mRNA upstream 31721 30995324 ~ 30999592 (-) True LOC110501744
XM_021579499.2 mRNA upstream 41096 31004699 ~ 31022949 (-) False LOC110501746
TU2058565 other downstream 441042 30486989 ~ 30519672 (-) True G1798869
TU2058468 other downstream 800028 30160234 ~ 30160686 (-) True G1798781
TU2058411 other downstream 888950 30071075 ~ 30071764 (-) True G1798732
TU2057553 other downstream 982179 29971558 ~ 29978535 (-) True G1797936
TU2057451 other downstream 1117534 29838277 ~ 29843180 (-) True LOC110501714
TU2058850 other upstream 13291 30976894 ~ 30995302 (-) True G1799132
TU2058841 other upstream 75590 31039193 ~ 31042216 (-) True LOC110501748
TU2061092 other upstream 1740197 32703800 ~ 32704323 (-) True G1801195
TU2060961 other upstream 1796255 32759858 ~ 32777777 (-) True G1801071
TU2061278 other upstream 1986864 32950467 ~ 32953670 (-) True G1801352

Expression Profile