RNA id: XM_036959125.1


Basic Information

Item Value
RNA id XM_036959125.1
length 5181
RNA type mRNA
GC content 0.46
exon number 28
gene id itga4
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 31736087 ~ 31774012 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTGAGAACTTCCACGTGACGAAATTTAGCCATGAGCACAGCAGACCTACGGACTCAGGCAGCTCGCTACAAGAGTTGAGTGTTCAGTCTCTATTCAACTGCCGTGCTAAAGTTGTTATCGTTATGTACAACTTTTCGCTGTTATCCTGACTTTTAATCATCGAAAAGTTTGACCTTTCTTTTGTTTCCCTCTGCCATCAATTGAAGTCTCTTCGTGTTGGAAAAGTTtgtgttttattgtttttttaaatggagcGAAAGAAGCCGGTGAATCTTTATTGCTGTTGGACCTTTCTTCTCGCTTGGTGCTGTAGTCTCACTGACTGTTACAATTTGGATGTAGACCATCCGGTTAGTTTCAGTGGCCCAAATGGATCTTTATTTGgatattctgtgttgttacataAGAACAAGCAACACACATGGTTATTAGTCGGAGCTCCAGTTGCGAATTCAACATTCGATCCAACCCTTATAAAACCAGGAGCAATTTATAAGTGCAACTTCTCAGGCAATAGAGAATGTCAGCAAATATCAACGGgTGTGGACAGTTGTGGGAAGACTTGCTTCTCTGAAAGTGACAACCAGTGGCTCGGAGTCAGCCTGTCTAGACAGCCTAGTGATGGCCATGTATTGGCATGTGGGCATCGTTGGAAGAACGTGTTCTATTCCAGGAAAGACAACCAGAACAAGCTACCTCATGGTGTCTGCTACAGATACGAAGCTGACCTCAAACAGTCTCAACCACTTATCCCATGCTATAAAGATCATCAACGGAAGTTTGGTGAAGACTACGGATCATGCCAAGCAGGAATATCCAACTTTCTGAATGAGGACTTGATAATAATGGGAGCCCCTGGGACATCGTACTGGACTGGGTCTGTTCTGGTCTACAACACCTCCAGTATGGTCCTGTCTGCCTATGTGGATGACGACAGCACTGTACTCTATGGCAGTTATCTGGGCTACTCGGTTGGCGCCGGCCACTTCCTTCACCCTGACTCCACAGAGATCGTTGGAGGTGCACCCCAGCACAGGCAGACTGGTAAAGCCTACCTATTCAGAGCTGAAGAAAACATGCTGAAGATCATCAGTGAAGTCAAGGGAAGCAAGCTGGGCTCGTATTTTGGTGCCAGTGTGTGTGCCGTGGACCTGAATGGAGATGGCCTGTCTGATCTACTGGTAGGAGCTCCCATGTACAGCACCACGAGAGAGGAGGGACGAGTCCATGTCTACATCAACCAAGGAGCTGCTAATATGAAGGAAGCAGAGTTTCAGTTGGCTGGAAGCAAATCGTATGCTGCAAGATTTGGGGAGACCATAACCGATCTGGGAGATATTGATGACGATGGCTTTCCTGATGTGGCGGTGGGGGCTCCGCAGGAGGAAGAGCTGCGTGGGGCTATATATATCTACAATGGGAGGAAGACAGGGATCTCTCAGACCTACTCTCAAAGGATCACCGGGTCTCTTCTGGGTAATGAGTTAAAGATGTTCGGCCAGTCTGTTTCCGGAGGCATCGATGTTGACGGAAACGGTTACCAAGACGTTGCGGTAGGGGCCTTCCTCTCGGACTCCGCTGTGGTTCTGAGGACACGTCCGGTGGTAGTGGTTGAGGCCTCCATGCTCCTGCCTGTCAGTGTGAACCGCTCTGTAGCGCTATGTTCTGACAACGGTCTTCCTGCTGTCTGCATCAATGTGACAGTCTGCTTCAGGGTCCGCGCTCGACGCTACAACGGACTCATAGAACTGCAGTATAACCTGACAGCCGACACTCACCACAAGGAGTCTTTCCCCTCCCGCTTCCATTTCCACGGCAACGGGACGTCCAACGTTACGACAGGGCAAGTCAAGGCCAGACACGACCAGCTGACCTGCATCACCCACCAGGCCTTCATGAGGAAAGATGTCCGGGATATCTTCACGCCCATCCATTTTGAGGCGACGTACGCCCTCAGACAGCACCCTGTCCATACCTGGGGATTCAGAATATTCCCAGCCCTGAAACCCATCCTGCAGCAGAGAGGGGGGCACAGCAACCTGGTAGCCAATAAGACTGAGTTTGCTCGGTACTGTTCATTGGCCAACTGTTCAACCAATCTGCAGGTCTCTGCATACCTGGTCTTACCACAgaaacacaacaacatacagtactttgCATTGGGCAATGGGAAGACCATCATGTTGAACACAACCCTGGTGAACGCTGGAGATGATGCCTTCCTCCCCAGGCTCCAGTTACGCTTCCCCTCCAACCTGCACTACATCAAAGTGCTTGATGCAGTAGAGAAGTATGTGAGCTGTGACATTTCAGAGGAGAACAAGACAATAGTAGGAATGGATTGTAGTGTTGGGAACCTGTACTTCAGCTCTGGAGCCAAGGTGAACATCAGCTTTCTGTTGGATGTAAACCAGAGTAGCAGTGCTGGTGACATTAGCATATCCATCAACACTTTTGGAGACAATTCTGAAAATGAGGATCTTCTGCATGACAACTCAGCCACTCTGATGTTACCGTTGAGATATGGCGTGGATGTCAGTGTCCATGGGTTTGTGACTCCAACATCCTTTGTATTTGGTGACCAGGAGCCTACTCCAATTGATTGCTACACAGAGACATTCAACTACACTTACAAGGTTGTCAATATCGGTCCAAGCAAATCTCTCAACACGGAAGTTGAGATTGATATTCCCAAGATACTATCACCATATCCATACAGATTACTCCACATTGCAGATTTTCAGACCTCTCTTGGAGAATGCTCCATTAAAAACGGCTCCATCACAGTAGAAGATGATTGTGAGGTGCCACGGTCGTCTTTAATCAAGGaactggtcttcttcttctccaaAACCAGCAAACGCAAAATGTTCTGTGCTCACGGAGACGACCTGTGCCTGACTCTGGTGTGTAGACTAGGAGACATGGACATTGGGAAAGAAGCCACCATTCAGATGGAAGTGAAGCTCAACCCCACTGTTCTACAGCTCACACCGgGTCGTCATGGAGTGATGCTGATAGAGAGTACTGGCATCATCACATCACCAAGGGAGGACCCTCACACCATCCTATTACAGCAGACCCCTATTGCTCAGGTTGTGTTGGAGGCCCACTTCAACCAGAAGCCTCAGGCAGCAGTGGAGGGGTTCATCATTGTAGGGAGTCTACTGGTGGGACTCCTGATCCTGGCCCTGCTCATCTTCGCCCTCTGGAAGGCTGGTTTCTTCAAGAGGCAGTTTAAGAAGGAGATCAGGAGGGATAGCTGGGACTATGTACCAAAGAGTGAGAAGACTGAGAGTATATCCTAAGAGTGTACTAATACAGAATGGTTCTATACAACAACATGAACTAACTGCTGGGGAACAGCTTCTCTACTAAAAGGCCCATTTTGATTGAGATCATCCAAACCCAAGGGAAAGAACTGCAGGACAATTCAAACATTTGTGGCTCAAAATCTAGGAATCAACAAAATGCTGTAATTTCTCTAAAACATGCAGGAGGAAAAACGTTTGCACTTTACCTCTGGGCTTGTTGCAGTGAGAGTATAGAACATTGGACTGCGTACGTGGAATGTCCATTAGAACATGGACTATGTGACCTCACAAGAACAGGCCTATCATTCCTGTTTTTATTCCCCACCAAGAACTCAGGATATGAAGCCGAACATTCCATGGTCTTGTTCAATAGGCATGAAACAGAAGAAAACGCTCCAAAACAGAGTGTGAAACAGGGAGGCACTTTCTGTGCCTGTCCATTAATTAAGAACCGCTCATTTTACGCTGCAAAACATTCTCCCATACCTGACTACTTGGATTTGGTCGCACATATTTATTGTGTCTGCTGTACAAAAAATGTATGAATGCACTGCTGAAGCTTTTCTCTATGGATAGGAAGTCTATTTGTATACAATgatatatacacatctatatgCCAAATCTATCCTCATTAggtgtgtatatactgtgtatatagatatatcaAGAGGACCTTTCTTTCGCATCCTTTTAAAACAACATTTCCTTTTGTATCTTCATGCTATGGGTAGGGAGGGGAAACCGCCTCAAACTGTCACACATTTATTGTGAAACTAGTGTCACTAGTGATAAACCATCAGATTGAAAGAAGGAACATTTGTTCTGGTTGATCTGGGAGACCCAGCGAAAGCCTCTGTCGAGCCGTACAGCCTAAACCCATGTTTCATAGAAATGAATAGGAGCATCTCACACTCTGCAAAAGTTACGTGTCCAGTGTAGCAGACCAGTAAGACCAGTACCTGCACAGGTGTTTATTCTTCAATGTGTATTTTTGCTCACCAGCTTATGGAGTGAATGGGACAGAAGGTGTAATTGTTATAATATAGAACTGAAGGTAACAGAAGGATGAGGAGGTCAGGGAAGTGTCATCAGTGAAAAAAGGCGTCTGTTCACCGACTCACTCACTGAATGACACATACCACTCCTCAAGGGGACagcaccctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtttgcgtgtATGCATTTTGGTGTGTGCGTACGACAGCAACTCATACACCAGCAACTCCTACACCATGGCAGCAGAAGTTTCCAACACAGTCAGAAATGAAAAATGAAAGAGCTCGTTCTTCAGAAATGACTCAAACGTTCCTCAAATGGAACACACGGAACCTTTTGGAACATTTTCATCCCTTTGGATTCAATGGGTTCTGTGTTCTTACTGTAGCTGTAAAGGATTGGAACATTCAGCTTTTGGAGAGATGGTAGGCTGCATGCGGAAGAGTATCATGTTTTTACTGCTTGAATTTTCAGGGAGTCAACCTTTCATGACCAAGTTGTCAGTTTTGACAAAAATAAAGGGGGCACATTCCACATTTCTATAAATTgaaataatgttttatttttaataaatacgTGTGTGGCGTGTAAAAATGGACAGATAACATTTTGTTTGTCAACACATTTCACTTTGGTCTGATAATTTATGTAATCGTGCACTGGAATGTATTATTATGTTGTCTTTGCTTTAATATAAATCAACCTTTTCTATTTAA

Function

GO: NA

KEGG:

id description
K06483 ITGA4, CD49d; integrin alpha 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2059462 lncRNA downstream 104492 31631384 ~ 31631595 (-) True G1799683
TU2059458 lncRNA downstream 109306 31626560 ~ 31626781 (-) True G1799679
TU2059436 lncRNA downstream 152969 31582659 ~ 31583118 (-) True G1799657
TU2059212 lncRNA downstream 290065 31445663 ~ 31446022 (-) True G1799464
TU2059123 lncRNA downstream 473298 31262405 ~ 31262789 (-) True G1799378
TU2060147 lncRNA upstream 145522 31919534 ~ 31919993 (-) True G1800334
TU2060152 lncRNA upstream 153614 31927626 ~ 31928431 (-) True G1800339
TU2060159 lncRNA upstream 167977 31941989 ~ 31942454 (-) True G1800346
TU2060160 lncRNA upstream 168446 31942458 ~ 31943250 (-) True G1800347
TU2060256 lncRNA upstream 298491 32072503 ~ 32088285 (-) False G1800437
XM_021579532.2 mRNA downstream 117482 31572817 ~ 31618605 (-) False itprid2
XR_005038820.1 mRNA downstream 117482 31572817 ~ 31618605 (-) True itprid2
XM_021579533.2 mRNA downstream 138368 31572817 ~ 31597719 (-) False itprid2
XM_021579531.2 mRNA downstream 168580 31544328 ~ 31567507 (-) True LOC110501758
XM_036959120.1 mRNA downstream 372396 31295950 ~ 31363691 (-) True LOC110501754
XM_021579538.2 mRNA upstream 170562 31944574 ~ 31998145 (-) False ube2e3
XM_036959126.1 mRNA upstream 170562 31944574 ~ 31998179 (-) False ube2e3
XM_021579537.2 mRNA upstream 170562 31944574 ~ 31998351 (-) True ube2e3
XR_005038822.1 mRNA upstream 404630 32178642 ~ 32179005 (-) False LOC118943602
XM_021579601.2 mRNA upstream 1081947 32855959 ~ 32882104 (-) True LOC110501778
TU2058841 other downstream 693871 31039193 ~ 31042216 (-) True LOC110501748
TU2058850 other downstream 740785 30976894 ~ 30995302 (-) True G1799132
TU2058911 other downstream 772553 30961087 ~ 30963534 (-) False LOC110502090
TU2058912 other downstream 772553 30961087 ~ 30963534 (-) True LOC110502090
TU2058565 other downstream 1216415 30486989 ~ 30519672 (-) True G1798869
TU2061092 other upstream 929788 32703800 ~ 32704323 (-) True G1801195
TU2060961 other upstream 985846 32759858 ~ 32777777 (-) True G1801071
TU2061278 other upstream 1176455 32950467 ~ 32953670 (-) True G1801352
TU2061248 other upstream 1184310 32958322 ~ 32960485 (-) False G1801331
TU2063359 other upstream 2744494 34518506 ~ 34540173 (-) True bard1

Expression Profile