RNA id: XM_036959175.1


Basic Information

Item Value
RNA id XM_036959175.1
length 6955
RNA type mRNA
GC content 0.51
exon number 14
gene id LOC110502095
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 35943510 ~ 36060137 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGCCCATCTGGAGCAGCAAATGGCTCAACTCAACAGGGAGcacggaggaggtggagggtagagagggggagagaaagaggggatcgGATTGAAAACAGATCAGCTTGAAGATCTCACCACCGCATGTCTAGAACAACTGTCGATTAAAATCTAGTTTTAGTTTACATTTTCAGCCACGTATTCTGGCGAAAACATGTCATGCGCTTTCTTATGTAAAAACTCAAAGGTGAGTGAGAAAACGTTACCGCTTGAAGATGATGGATTGTAAAAGTTAGATGCGAGTAATTGCGCTCCTCCGTGTTAAATGAGTTATCCGAGGGATGCCGTGTTCCGAACTTTGAATAGACTTTAAAACTTTTCTTTAAGTACATAGCCGGCCTCGGCTCTTTTCATTGAAAAAGTACACTTAAGCCTAATTCTCGAAATACTTGCAGAGTCGTCGGacaaagtgagagaaaaaaaacagcatCGGGGTCTAAAGAGAAACTATTCAAGGTTGACTCGGACTCCCTGCTGTCCACCATGGAGACCTCTGCCCTTACAGCCACTGAGAAGAAGGAGCACACAGGATCAGGTCTGGATGGAGGCAGCTTCTCAGACCTGCCAAAGAAACCGTCTCCTACTACAGTTACCAGAGGTCCTCACCATCTCTTCCCCACGTTTCACACACCAATCCCGATCGACATGCGTCACCATGAGGGGAGGTACCATTACGAGCCACACCCCCTCCACACCATGCATGGACCTCAAGGCCTAGCCAGCAGCCCAGTGATCTCAGACTGCATCTCTCTGATCCGTCTGTCCCCTCAGGCAGCAGGGACGGGGGAGTCCCCCTTCAGCCCCCCTCACCCCTACATCAACCACCACATGGAGCACTACCTCCGCTCCATGCACAGCAGCCCTACCCTATCCATGATCTCAGCTGCCCGTGGACTCAGCCCCGCAgaagTGACCCATGAGCACCTGAAGGAGCGTGGTCTGTTCAGcctgccccctccccctccaggggCCAACCCTACACAGTACTACCACCTCATGGCCAGTGGCAGAAGCACCTACGGAGACCTCCTCTTGCAGACCGGGGCGGCCGCGGCAGCAGCAGCCGCAGCAGCACACCTGCCCGACTACATCGGCCCTGTGGATGTGTCCAGGTTCTCCAGCCCCAGACTGACCCCCAGGCTGAACAGGAAGCGagccctgtccatctcccctctctcagaCGCCAGCATCGACCTGCAGACCATGATCCGTACCTCGCCCAACTCCCTCGTGGCTTACATCAACAACTCACGCTCCAGCTCTGCAGCCAGCAGCTCCTACGGACACCTGTCAGTCAGCGGCATCAGTCCTTCGTTCACCTTCCCCCACTCCATCAACCCCATGGCATACCAACATCTGTTCAACCAACAGAGAGGCCTGAGTGCGTTCGGCCATACCCCTCCCCTCATCCAGCCCTCGCCCTCCTTCGCTGCCCGCCAGCATGCCCACGCCATTGCAGCCTCCGCCCTCAACACCACCCACAACACCTCCAGCTCTGAGTCCAACCAGAATGCTGGTGGTGACCCGGCGGTGAGCAGCACAGTCAATCCCATGATCACCAAGAGGCACAAGGTCAAGACAGAAGCAGAGGGACCCCGGTCCATATCACCGTGCTCTCAGGAGCATGTTTTGGACCTGAGTGAGGAGCGGGATAAAGATGAGTGGAAGCAGGAGCCAGAGGCTGTCTACGAGACCAACTGTCACTGGGACGGCTGCACCAAGGAGTACGACACTCAGGACCAGCTCGTTCACCACATCAACAACGACCACATCCATGGGGAGAAGAAAGAGTTTGTGTGCCGTTGGGATGAGTGCTCGAGAGAACAGAAGCCCTTCAAAGCTCAGTACATGCTGGTGGTCCACATGAGgagacacactggggagaagccaCACAAATGCACAtTTGAAGGTTGCTGTAAGGCCTACTCTCGCCTGGAGAACCTGAAGACCCACCTGAGGtcccacacaggggagaagccgtaCGTCTGTGAACATGAGGGCTGCAACAAAGCCTTCTCCAACGCCTCAGACAGAGCCAAGCACCAGAACCGCACACACTCCAATGAGAAACCCTACATCTGTAAGATCCCTGGGTGCACTAAACGCTACACAGACCCCAGCTCTCTCAGGAAGCATGTGAAGACGGTTCACGGACCAGAGGCCCACGTCACCAAGAAACAACGTGGCGATGTGCCTCCCAGGGGTCCTCCCAAGGGAAATGGAGAGAACGAGGCAAATGccaaacagagtgatagagggatagatggaaagatggaggcCAACAGCATTACTAGAGGAGTGGAGGACTGCCTGCAGGTCAAGTCAATCAAGACCGAGAACTCAATGacGTATCAATCCAGCCCTGGCGGTCACTCGTCATGTAGCAGTGAGCCATCGCCACTTGGCAGTGCCCACAACAATGACAGTGGAGTAGAGATGGCCTTGCACAGCGGGGGAAGCTTTGGGGAGCTGAGTGCACTGGATGACGCTCCCATGGTGgactcctccaccctctcccacGGCAACTCAGCAGGGGTGGGGCTTGGGCTCCGTAAAGGGGGAGGAATCACCATCAAGCTGGAGAACATCAAGAAGGAGAGGCTGAAGAATGTGAGGGATTCGTGTCCCTGGGCCAACTCTGGTCCACAGATCCGGAACACCAACACCAAGCTGCCTCCTATTCCTGCTGTTGGTTCCCTTCTGGAGAACTCCAATATGATCGCTTCACCCGGGCCCTACCCTGGTCAGCGTCTTGGTGACCTGTCATCATGCGAGGTGACCATGCTAAACCAGTTGAATGAGCAGGGCCGCCGGTACAGCAACACCAGCACTGCCAGTTCAGCCTACACCAGCCGCCGCTCCTCGGGCATCTCCCCCTGCTACTCCAGCCGCCGCTCTTCTGAAGCTTCGCAGTTCAGCAACCGCCACAACAACATCAGTTCAGCCGACTCCTACGAccccatctccacagacctgTCCCGGAGATCCAGCGAGGCCAGCCAGTGTGGAGGGGTTGGTGGAAACGGCCCTAGTTTGCTCAGCCTCACCCCGGCTCAGCACTACCATCTTAAGGCCAAGTATGCTGCCGCAACCGGAGGAGCTCCACCCACACCTCTGCCCAACATGGAGCGCATGAGCCTCAGGACCAGGATGGCTCTGTACGGGGACCACTCCCAGGAGAGGGAGAGCTCCTCCAATTCCAACCTGTTCCAGCCCCCTGCTGGAGCAGTGCCCAGACGCTGCAGCGACATTGGCTACAGTAACCATAGTATGATGCCCCACGAGGTCCCTGGTAACCTGCCACGGCGAGCCAGCGATCCCGTCCGCAGACCTACCTTGGACCCACTGTCCCTGCCCAGGGTACAGCGCTACAACAGCATGAACAGTATGAACCCCAACTCCATGATGCCTCCTCCCTCTACTGATCGCCGGGGCCTGGCCATGCAGGGCTACACACGATCCGACGGAAGTCTGCACCGCCACCCTTTCACCCCGCGGCCCCCCAGCATCTCAGAGAATGTGGTGATGGAGACCATGGCTGTGGACGGGCTGGACCATGCAGGGGACGAGGACATGGTGCTGCCTGATGATGTCGTACAGTATCTCAGGTCTCAGAACACTGGCGCCGGCCAATCAGCAGGCCCCGTCGACTACACCAACAGCCAATCACACGGCTTCCAGGTCCAAGGGAATATGACCTCCTCCCAGCAGCCCCAGCAGCAGTTCTATGGGCAAAGGAGGATGGCCATGGTGGATACCAACATGCCCCTGTCTGAGTCAGGCCAGGCTCCCCTAACGCTCTACAAGATGAGCCCTGGTTCTGGATCACAGCAACAGCAGTACCCAACCTCACCCCGTatgaacaacaaaaacaacatgcCAGTGCAGTGGAATGAGGTCAGCTCAGGGACTGTGGACGCCACAGGCACCTCAAGACTCACCAAGCAGAACCTCCTCAGAAACAACAACCTGGCAGTGGTTCAGCAGAGACAGAACTGTGGGCCTTTCCAGGGTAGTATGGGTAGTAACAGTAACCAGCAGGTGATGCCTATGAGCCAGAACATGGAGCTACAAGGCTACACTCAAAGAAGCAACGCCCAAAGGATCAACTCTGTCCAACAGCAACAGAGGCAGCCATGCAGCATGAATTATACTGAGCAGATGAGTCCCCAGCAGGGATACGGCCAAGACATTGTCCCCATCCCTAACTCTGGATCTGGGAATGGCAGCCTACGACCCAACTACAACGGCATGGCACTGCCCAATGGCAGAGTAATGGCAACACATAATCCAGATATTCAAAACTACAGATCAAGGACTCAGGTTGAAAGCTATCCCCTTCACATGAATCAGGTTGAGCAGCTGAACTACAGTAGTACGCCTCAGCAGCAAGCCGTCCATACTGGAACCAGAGATGGGATGCAGCCCAGGCTTCCCATGGAGACCAAGTCTATGTCCAGACAACATGTAAGATCCAGCAGTACGATGCAGAACCGTTTCCTTCAGTCTGACTTCAATCACAACACCTCTGAGGCCAGTCCAAAGAAGCCAGGCCGCACCGCAGCACATAACGTGGGACAAAAGGGAAACTCCAACTCTAACGCTCCAATGTTATACACTGGCCAGATACACATGTTCGAGTCCAACAACAACCTGAGTTTCGACTCCCCCATGTCCCCCTGCACACCCCAGGCACTGGTAGGCACTGCCGTTACCATGGTATCCCCAGGGGTCAACCAGGTCACCAGCACCGTGGACTCCTCTGGTGTGGAGCACGCCCAGATTGACTTTGATGCCATGTTGGATGATGGTGACCACTCCAGCCTGATGTCGGGGACCCTCAGCCCCGGGCTCCTCACAAGTCTGTCCCAGAACTCCTCCAGGCTCACCACCCCCCGTAGCTCTGTGACCCTGGCCTCTGTGCCAGCAGGGATCGGTAACATGGCCATCGGCGATATGAACTCCATGTTGACCGCCCTGGCTGAGGAGAGTAAGTTCCTCAACATGATGAGCTAATGCCTTGGCTGCATCGCAATAGTTTTTCTCCCAAAGTGTTCACGTGTTCACTTCCTTTCATGAATTTCAAAGGAAATGATTGGTGAATGGAAACTCCCCCTGGCCCATGCCTACACCTATCCAATGCTTTTACATTTGTGGGGAgtagtgcacacttcaggaggaaggagagattattgggaTGCCCCTCTTGTATATTCAGACCATTTCAAGAAAGCATCAGGAAAATTGTACTATAAAAGCTCTGATTATATGTAACAACACCTTATGGAAATAGTTACTTATCAGGAGAATGTCGATCTCTACCGGCCTGTAAAGAGACTTTGCTCATCCAGTTATATGTAATATTTGCTCAAGTACATTTTAAGTAGTGTTTATGTTGATAAAGTAAGTGTAGTAAAGACATAAGGGGTATTTGTATCACTGTTTTAAAAAGCCATACTTTGTATCTACGAATAAAAATAGACAAGGGTATAAAAATACATTGGCAAATGTGTCCATTGCTCAGTATTTGTTGATGTTTGTTACCTTTTAAAAAGCAGTGCACTGAAAGCAGTTCACCAAGTGCCTTGATAAAAAGATCAAGTTTGAGTAATATGTGAACTCATAAAACGTACATACATGTAACAATGTTGCCAAGAAAAAATGCGTATGAAAATATTAGAATATCATTTCTCATTACAACCTTCCATCATGTTTATAAATATACTGTAAGGTACGTGGTTTAAATTATGTTGAAGGGACGTAATTATTGCAAGCCGATTACAGTATGATGCCACTATTTAACATTGCGATGCTACATTGTTTTCATCTATCCGTGTATAGAGGAACTTGCAGTGGAACAGGTTCCCTTGCCAAGCTCTTAGGGCCGGTTTCCCGGACAAAGATTAAGCCTAGTGCTGGACTACAACCCATGCTTAGTGGAGATTATCCATTGAAAAtgatttttagtccaggactaggcttaatctgtatcTGGGAAACCAGACCCTGGCGTACAACAGGAGATGGCCCCTTTCAGTCATACTGTATAAAATATCCTCCAAGTGCCCTCTAAAAAATGTCGAACCCTCTATGGACCCTCCTCCTTGTCAGTCTGACTGTATGATTGAAAAGGACAGAGATCTGcctcagtgtcagtcagtctgtgAAGATACACACGGAGCCCCATGCCTCGCAACGTCTTGGAGGAATCCGATCTCTAAAGGAATATGCAAGTACTCCATGTGTTCTCTGTGGACATGATCACACACTAATTAGTGGATTCAttacccctccctcttccctgagTTCTGAGCTAGACATGGACTATATGGAGATTCAAATAAGGAATGTATTACTTTGATTACGAATCATATCAAAGACAATGAGATACCGCAACTCCTAAGTTTTTATTTAGTTTGTTTCCTGGACTTAAAGTAGCCTTATAGTATGTATAGGTATACTGCTCATTCATTTGGCTAtgctcagtgtgagtgtgtgtgtgtgtgtgttgtatataGCTTTTGTACATTTCAAATACAGTATCCACGTTTTTTCTTTTTTAACCAAAGTCTTGTTTTGTGTCTCCTTTGAAATCACATGGTCTCGTCCCTCTGGGACACATGAAAGCAAAGTGTCGTTATCTAAACTCTTCAGCACCCACCCTAATGAATTCTACACACCATGAAAACCATCCTCATGTCAAATAACTATAGAGCGAGGCAATGTTCCCGCTGTTGCGGAGACGTCGGCTCAACTGGAAATTAACGTGACATTTTATTGCAGATCTTACGTGAtacttcagcgatacagattgatatactgtaccagtcaaaagtttggatacacctactcattcaatgttttttctttattttttcaagaactttgaaggtttcttcaagtgctgttgcaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2064946 lncRNA upstream 115627 35824088 ~ 35827883 (+) True G1804830
TU2064788 lncRNA upstream 163142 35779017 ~ 35780368 (+) True LOC110501797
TU2064743 lncRNA upstream 193630 35740439 ~ 35749880 (+) False LOC110501795
TU2064747 lncRNA upstream 193630 35740439 ~ 35749880 (+) True LOC110501795
TU2064761 lncRNA upstream 243259 35699520 ~ 35700251 (+) True G1804655
TU2065141 lncRNA downstream 7357 36067494 ~ 36067723 (+) True G1805010
TU2065155 lncRNA downstream 31256 36091393 ~ 36091633 (+) True G1805024
TU2065167 lncRNA downstream 33058 36093195 ~ 36102877 (+) True G1805026
TU2065171 lncRNA downstream 45957 36106094 ~ 36108964 (+) True G1805029
TU2065186 lncRNA downstream 67568 36127705 ~ 36128553 (+) True G1805042
XR_002470255.2 mRNA upstream 128598 35783183 ~ 35814912 (+) True LOC110501798
XM_021579634.2 mRNA upstream 162966 35769181 ~ 35780544 (+) False LOC110501797
XR_002470250.2 mRNA upstream 182991 35740432 ~ 35760519 (+) False LOC110501795
XM_021579637.2 mRNA downstream 183018 36243155 ~ 36247834 (+) True LOC110501801
XR_005038827.1 mRNA downstream 279617 36339754 ~ 36345450 (+) False LOC118943606
XR_005038825.1 mRNA downstream 279620 36339757 ~ 36345450 (+) False LOC118943606
XR_005038828.1 mRNA downstream 280382 36340519 ~ 36345450 (+) False LOC118943606
XR_005038826.1 mRNA downstream 280388 36340525 ~ 36345450 (+) False LOC118943606
TU2064995 other upstream 68058 35874562 ~ 35875452 (+) True G1804873
TU2064746 other upstream 184084 35740439 ~ 35759426 (+) False LOC110501795
TU2060607 other upstream 3029328 32910793 ~ 32914182 (+) True G1800754
TU2059894 other upstream 3569329 32367636 ~ 32374181 (+) True LOC110501767
TU2058268 other upstream 4646091 31293552 ~ 31297419 (+) True G1798597
TU2065354 other downstream 303459 36363596 ~ 36363930 (+) True G1805191
TU2065389 other downstream 374863 36435000 ~ 36443077 (+) True LOC110501805
TU2067606 other downstream 2019729 38079866 ~ 38186629 (+) True LOC110501842
TU2067723 other downstream 2238990 38299127 ~ 38302575 (+) False G1807306
TU2067724 other downstream 2238990 38299127 ~ 38316253 (+) False G1807306

Expression Profile