RNA id: XR_005038827.1


Basic Information

Item Value
RNA id XR_005038827.1
length 2844
RNA type mRNA
GC content 0.43
exon number 5
gene id LOC118943606
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 36339754 ~ 36345450 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttttCTATCAATGATTTTCTTCCTGTATAGTGTGGTGTAGTCTACAAAGCACAATTGCCATCATTCCTGATCACTTCATCCTGACCCAACGATTCAACATTAAACAGGAGCTTCTGGCTCTATAAAACCTCTACCACTCTTGGGCCCTATCGAACCAGTGACATGCACACAGCCTGTATGCCTGGATCTTAATCATCATTTACCTTTGCCTTTCCTCTACATCCCTGCGGCTGGAGTGCACCTGCTCCTCCATCTCGGGAATGAGCACCAGTTAGTGATGAGGTGAGGGTACTCTACTATAGCCTCCAGTGCATGCATAAATCGGCTGTATAATTGTTGCCCTACCAACAATGGAATCCTAATATAATGtaataaaaacatatataatataatacatatcgTTAAGTTCGACAATAGATACAATCTCTGCTCGCATCATTCTGTATCCCTCAACAGAAAACCACTTCTGTAACCAGCACGACACATCATCTTGCAAAATTGCTTCATTTTTAGCTCGTGGCACTTCAAACTTTGAAAGAATAAACTCATGAACACACATTGATACATTGTTGCATTGATGAAGCTCAAACTTACATCTATAGTAGGCTACTTTTCAAAGTAACAACGAAACCCCCAGTTAGAATTGCATCACGAGCAGGTTTCCCTTCCGAATCCCGGACCAACAATTTTACTTGCAGCTTTTACTTTTAATGATTTGCTGACGGTTTAACGATCTCGTTTTTAAATCTTCAGTGTACTGTATGTTTTTCTTTTTGTTGTGGGAGCATGAGGGAGATCACTCAAGCAGTACCCCAGTGTACAACCGTGTTATACAACTCTCTTCACTAACAAAATCTCCCAGGGTCGGCCCTAGATTTTGGGGGCCCTaaacacaaaacatttttgtGGCTCCCCCTCTTAACAGCAGAgataaacatttacattttacatttaatttcctgaaattctacacattttgccaagaggcagagattttttttaaatctacaattttacagctaatttcctgcaaatctacccattttgccatggggtggagagacatTTTTGCACGTTTAAAGCTCATTCCATGCaagtctacacattttgccaagaCTTACATCCATGTTAATGATacctgagtgagagtgactaacaaaatcaactGACTAATTTACCAAACAAAGAATTGTTAGCTGaaatggctaattgagtgactgtcagtgactgacaataCCAGTGTTTTCCACTTCATATTAACTATGCTacttttcattttcaattagCTACTCTGTCGAGCCCTCTCCCACTATAATGAACAATATGCATCTTCTAGCAATCTATTGATAGGATAGGCGCCTGTCAGTCACAAAgcgagcagagaggaagaggcgaagcgagatgtttcactctcgccaaaatctgtccaaaataagaccaatgtgtttccattggcttattttggacctaagcttgtcTCCTGTCTTCCCACTTTTAGGACGACTCCCATTGAGACATGAACATCTCATCCTTATatacaggttttttttttttttgtttgcagTCAAATTTCTTTACGCGGAAGAGAGCATGATGCTCGTGATTTTGCACATCCCATGTAATGTAACTGGTAACAATGACTAGCACGCGGTGAATTGTTGCGTGAGTGGGTCGCTTGAGGGTGCTGGCAGCATATGGCAGCAGTTCGATTGTGCGTCAAGAATTCAGCCTTGCAAGTTTGTGTGAATGTCTGGTTATTAAATGGatacagagagctgtgaaagcctgtctgcagatgaagaggtcccaatgaagagcagtggttctcagtcctggttCTGGGAACTGGACCTGTTTTTGCCTTAGctctgattcaaatgatcaagtcatcaagcttcaagtgATATCTTGTAACTGGAGATTCCTTCAAAATGATTGCCTACAGTTACCGTGTAGGGCACTGCAAGGTTGGGTGACCAGAGCCATCTGGGACTGCCTCCTGGAGGAATTCAGGCGTTTGAAGGCTACCTGTGTCGTGCataacttcatgaggatggacacgAGTACCAGGAGGGGGATCTGCAGCTCGCCACCGTGTGCCAGAGGAGAGgtatgttttgatgtgagagaggatgccaCCCCCAGTCCCGTCatcacccgctcttaagataaccttaaGGACAACTGGGGACCCAaagctggttaggagacaccactagagacacTTATGTACTTGTGAAGAACTGAGacaatattagggtagcactgtaattcattaaaCATATGCTGTCTTCCCTGCTCCTCAATTCTTCTTTCCCCTTCTGTCTTTTACACTCTCTCACTTTTTctcgtactattgtttgtacagatgaacgtggtaccttcaggcatttggaaattgctcccaaggatgaaccagatttttttttctgaggtcttggctgatttcttttgattttcccatgatgtcaagcaaagaggcactgagtttgaaggctacaatgtgaggatctgtcacaccagccttcgctttggctccccctcctgtccaGCTCAGGCATTCGGCGTCGCCGGCCTTCTAGCTCCTCCCGAACCTGCTGCTGGCAAATGCCCTTCACTCATCAACCCCGGACTTGTctcgtcatcattacacacacctggttccaatccccactctatACATACTCACTCTGTCATTTGTCTTTTGTCGGCATTGTAAATGTTGCTTATTTTCCTTGAGTGGAATCTCTCCTATTTCCTGAGTACTTTATTATTTAGTACTTTGGGTTTCGTCCCGCTTTTAGAATTATAGTGCTTTAATAAACTCAGTAGTTCTAAACCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2065316 lncRNA upstream 1534 36313205 ~ 36338220 (+) True G1805158
TU2065310 lncRNA upstream 31377 36307550 ~ 36308377 (+) True G1805152
TU2065306 lncRNA upstream 37547 36301850 ~ 36302207 (+) True G1805149
TU2065273 lncRNA upstream 88510 36248134 ~ 36251244 (+) True G1805123
TU2065214 lncRNA upstream 107677 36229748 ~ 36232077 (+) False G1805068
TU2065363 lncRNA downstream 30136 36375586 ~ 36375795 (+) True G1805198
TU2065375 lncRNA downstream 69850 36415300 ~ 36425655 (+) True G1805209
TU2065403 lncRNA downstream 105611 36451061 ~ 36451452 (+) True G1805231
TU2065406 lncRNA downstream 112343 36457793 ~ 36458456 (+) True G1805234
TU2065418 lncRNA downstream 129209 36474659 ~ 36474979 (+) True G1805246
XM_021579637.2 mRNA upstream 91920 36243155 ~ 36247834 (+) True LOC110501801
XM_036959175.1 mRNA upstream 279617 35943510 ~ 36060137 (+) False LOC110502095
XM_036959176.1 mRNA upstream 279617 35943510 ~ 36060137 (+) False LOC110502095
XR_002470255.2 mRNA upstream 524842 35783183 ~ 35814912 (+) True LOC110501798
XM_021579634.2 mRNA upstream 559210 35769181 ~ 35780544 (+) False LOC110501797
XM_021579638.2 mRNA downstream 8220 36353670 ~ 36359762 (+) True LOC110501802
LOC110502098 mRNA downstream 16652 36362102 ~ 36376836 (+) True LOC110502098
XM_036959204.1 mRNA downstream 34056 36379506 ~ 36406219 (+) False LOC110501803
XM_036959206.1 mRNA downstream 38287 36383737 ~ 36406219 (+) False LOC110501803
XM_036959207.1 mRNA downstream 38287 36383737 ~ 36406219 (+) False LOC110501803
TU2064995 other upstream 464302 35874562 ~ 35875452 (+) True G1804873
TU2064746 other upstream 580328 35740439 ~ 35759426 (+) False LOC110501795
TU2060607 other upstream 3425572 32910793 ~ 32914182 (+) True G1800754
TU2059894 other upstream 3965573 32367636 ~ 32374181 (+) True LOC110501767
TU2058268 other upstream 5042335 31293552 ~ 31297419 (+) True G1798597
TU2065354 other downstream 18146 36363596 ~ 36363930 (+) True G1805191
TU2065389 other downstream 89550 36435000 ~ 36443077 (+) True LOC110501805
TU2067606 other downstream 1734416 38079866 ~ 38186629 (+) True LOC110501842
TU2067723 other downstream 1953677 38299127 ~ 38302575 (+) False G1807306
TU2067724 other downstream 1953677 38299127 ~ 38316253 (+) False G1807306

Expression Profile