RNA id: XM_036959204.1


Basic Information

Item Value
RNA id XM_036959204.1
length 3224
RNA type mRNA
GC content 0.46
exon number 24
gene id LOC110501803
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 36379506 ~ 36406219 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTCTGGTTCACAGGCGGGTTCCCATACTCAACTGCTCTCTGTAAAGTAAGATCCACTATTCAATTGACTTCGTGACAGGATCAGATCTGCACTGAAAAGTCCTTGAAGATTAAGTAAAAAATTCATGGATCTGGAGTGGAATATTAACTAACGGGTTAAACATATGTTATAAGAAAGCTGCGTTTCCATTGCTGCGCtcacagtcacagacagacaagagAGGGACGGACTTGGACGCACGTCAAGAAGTTCACCGACCGATGCGACGCTAGTGCCAAAAACACTTCAGAAAATACACGAGAAATGGGGAAACGAAAGGAGCTCAAATTGGAAATTCATGAAAGTGGAAAGACAATCAAATCACAGAAACTATGTGGAACCAACTACCCTGTCTGCATCTCCTTCATTGTGGTGAATGAGTTCTGTGAACGCTTCTCCTACTATGGCATGAAAGCGGTGCTGACGCTGTACTTCATCAATTACCTGCATTGGAACCAGAACCTGTCCACAGCAGTGTACCATGCCTTCTCCAGCCTCTGTTACTTCACCCCTATTCTGGGGGCCCTCATTGCTGACTCCTGGCTGGGCAAGTTCAAGACCATTGTTTACCTCTCTGTTTTCTATGTGCTCGGTCATGTCGTCAAGTCGGTTGGGGCCATACCGAGTGTGGGGGACTCGACCATACACATagcattGTCTATGGTGGGGCTGATCCTTATAGCCTTTGGTACAGGAGGCATCAAACCCTGTGTAGCAGCGTTCGGAGGTGATCAGTTTGATGAAGAACATACGAACGAAAGGAGGAAATTCTTCTCAATTTTCTATATGTCCATCAACGCTGGGAGTGTCTTATCGACAGTCATCACTCCAATACTGCGAGGAAATGTGCAGTGTTTTGGCGGTGACTGCTACGCTCTTGCTTTCGGAGTACCAGCCATTTTGATGGTCATTGCTCTAGTCGTGTTCATCTCTGGAAGTGGGATGTATAAGAAGAGTCCACCTGAGGGGAACGTCTTATTGGATGTGTGTCGGTGCCTGGGGTTGGCCATCAAGAACCGGTGGATGAGTTCTAAGTATGACTCTAAGAGGAAACACTGGCTGGACTGGGCAGAGGAGAAGTATCCGAAACGTCTGATCCATGAGATTAAGATGGTCCTGAGGGTTCTGGTGCTCTTCATCCCTCTGCCCATGTTCTGGGCTCTGTTTGACCAGCAGGGATCCCGCTGGACTCTCCAGGCCACCCGGATGAACATGGCCTTTGGATCAGCATTCGTTCTGAAGCCTGATCAAATGCAGATGCTAAACGCTCTGCTCATCCTCATGTTTGTGCCTATCTTTGACGTGGTTGTCTACCCACTCATAGGCCTGTGCAGGATCAATCTCACGCCGCTGAAGAAGATGGCTGTTGGTATGATCTTTGCAGCGCTGGCCTTCGGTGCTGCCACCTTGGTGGAGGTCAACGTCATGAAAACAGTGGTGGAGCCTGCACCTCGTGGACAGTGTCTGCTACAGGTCTACAACCTGGCTGACAGTGACGTCAAACTAAGCATCCCTGGGAGTAACCTATTCTCACAACCCATCAAATCCTATGAGGATCCTCAAGCATATCAGCATCTTGAACTGGGGGGACACAACAAGACCATCACTGTGGGGATCAATCACAATGGACACTTTCATGAGTGTAGAGAGACTTTCACAGAGCAGAAAGCCTACAGTCTCGTCCTGCACAGCAAAACCTCGGGAATAGTGTGTCAACTAGCGACAGACAACATACTTAAAAGTGAAAAAATGGAAGCATACCTGAGGTTCATAAACACGCGGAGTGAGGCTGTGAACGTAACGATGGCTGGTGTGGACTTTTACATACCCGCTGACTATGGCATATCTCCCAATAAGAGTGTGGAAAGAAAGGAGTATACAAGCGTGAGGTGTACATCAGGCTCACAGGATTTCTCCATCAACCTGGGCCTGCTCGACTCTGGGGCTTCATACACAGTCATCCTCAAAGGGGGCTCTGGAGACATCATTCCCCAGAAGATGGAGGATGTGAAGGCCAACAATGTTCACATAGCCTGGCAGATCCCCCAGTATGCCCTGATGACAGCAGGAGAAGTCATGTTCTCCATCCCAGGCATCGAGTTCTCCTATTCACAGGCCCCAGCCAACATGAAGTCACTGCTGCAGGCCGGCTGGCTGCTGACTGTAGCCTTTGGCAATGTCATTGTGCTAATCGTAGCAGAGGGGGCAGGTCTGGATCAGTGGATGGAATTCCTGCTGTTCGCTGGCCTCCTGGTGGCAGTCTGCATCATCTTCTCCATCATGGCTTACTTCTACACCTACGTAGACCCAGGCGAGCTAGACAAGCTGTTCCCAGACAAGACAGTCAATGAGGATGAAGATGACCTGAAGAAGGACCAGACAGACGACACTATGTACTTGAACTCAATAGAGAAGAGCACCAATATGTAGTCTGGTGACTGAATTCAGAGTGTTTCCCTCTCAGGAGATTTGTAAGCCCCCAGTGTGGAATCTTTtttgttttatacatttgtaaatcGAAGCAAAGTATTAAGATATGGTGATTGAGTGTATTTTACTTGCTGAACCTTACTGAATGTTGTTAGTTATTGTCACACCCTGTCTGTGTGATCTTACAGTATGGACTAACCACAGTCAGCACTCCAACTGAGACACTTCTCAAAATCTGGAGGTCAAACCAGGACCGGTGGTAacaaaacacattgttcaaacgctgtattttatttttgtgaATTTCTAAAATGTTACTGAACATAGTAGAATGATCTGAAGTCCCCTGTTTACAATGATGTTCAAAGATGAAAACAACAGACTCTTGTAGTTGATAAACAAAACAATTACAGAACATTGTGAAAAGGGTCCTTCTTTAGCAGGCATGAAACTTAAGGATTTTGGTTACTAGTAGAGCAATTTTTAACTAGTAGAACCATTTTTACTAGTGGCCTAGATTCATTTCCATCCCTGCTCTTTAGACTGTCTACCTGAGACAAATACTGGAGTAGACTTAACTCCAGTAATACCTGACTAAAAGAGCCTCATTCAAATGACAAAACTATGAGTCAAGGAAAAATGTCTAGTGTGTCCTAATCATTTGATAGATTGACCTTCATAAAACGTTCCACTCCTGGGAACCATTTTACTCGAATTTTACTCTTGTAGTacgtaaataaaaatgtgtaaatTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2065363 lncRNA upstream 3711 36375586 ~ 36375795 (+) True G1805198
TU2065336 lncRNA upstream 36658 36342013 ~ 36342848 (+) True LOC118943606
TU2065316 lncRNA upstream 41286 36313205 ~ 36338220 (+) True G1805158
TU2065310 lncRNA upstream 71129 36307550 ~ 36308377 (+) True G1805152
TU2065306 lncRNA upstream 77299 36301850 ~ 36302207 (+) True G1805149
TU2065375 lncRNA downstream 9081 36415300 ~ 36425655 (+) True G1805209
TU2065403 lncRNA downstream 44842 36451061 ~ 36451452 (+) True G1805231
TU2065406 lncRNA downstream 51574 36457793 ~ 36458456 (+) True G1805234
TU2065418 lncRNA downstream 68440 36474659 ~ 36474979 (+) True G1805246
TU2065441 lncRNA downstream 99908 36506127 ~ 36509551 (+) True G1805267
LOC110502098 mRNA upstream 2670 36362102 ~ 36376836 (+) True LOC110502098
XM_021579638.2 mRNA upstream 19744 36353670 ~ 36359762 (+) True LOC110501802
XR_005038827.1 mRNA upstream 34056 36339754 ~ 36345450 (+) False LOC118943606
XM_021579640.2 mRNA downstream 28800 36435019 ~ 36520762 (+) False LOC110501805
XM_036959215.1 mRNA downstream 29089 36435308 ~ 36520762 (+) False LOC110501805
XM_036959223.1 mRNA downstream 432495 36838714 ~ 36917226 (+) True LOC110501807
XM_021579643.2 mRNA downstream 543240 36949459 ~ 36970391 (+) True LOC110501808
XM_021579647.2 mRNA downstream 714716 37120935 ~ 37146250 (+) False LOC110501811
TU2065354 other upstream 15576 36363596 ~ 36363930 (+) True G1805191
TU2064995 other upstream 504054 35874562 ~ 35875452 (+) True G1804873
TU2064746 other upstream 620080 35740439 ~ 35759426 (+) False LOC110501795
TU2060607 other upstream 3465324 32910793 ~ 32914182 (+) True G1800754
TU2059894 other upstream 4005325 32367636 ~ 32374181 (+) True LOC110501767
TU2065389 other downstream 28781 36435000 ~ 36443077 (+) True LOC110501805
TU2067606 other downstream 1673647 38079866 ~ 38186629 (+) True LOC110501842
TU2067723 other downstream 1892908 38299127 ~ 38302575 (+) False G1807306
TU2067724 other downstream 1892908 38299127 ~ 38316253 (+) False G1807306
TU2067728 other downstream 1892908 38299127 ~ 38302575 (+) False G1807306

Expression Profile