RNA id: XM_021579647.2


Basic Information

Item Value
RNA id XM_021579647.2
length 3880
RNA type mRNA
GC content 0.45
exon number 13
gene id LOC110501811
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 37120935 ~ 37146250 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCAAATGTGTTCAGGCATTTTCGCAGCCACCTAACTGTACGGAAGAGCAACTGGTGAAAGTGTACAGGGTTTGATGGATGAGCAAGGGATTTTTTTACGTTCTTGAAATAAATATTCTAGCTACATTTTCTTTCTCAACAACGTCGGTTTATTTAAAGAAGTAGACATGCCTTTATTTGCGCAGAATCCATTCGACCAAGATGTTGAGAAAGCCACCAATGAAACCAATACAGTGGAGGACTGGGCTCTGATTATGGATATCTGTGACAGAGTTGGACAGACGCCCAATGGAGCCAAGGACTGCTTGAGGTCTGTGATGAAGCGAGTCAACCACAAGGTCCCACACGTTGCCATGCAGGCCCTCACCGCCCACAGCAAGGTGTGTGACAAGCTGAAGGGGATGATGGTGGACTGGTGTGATGGGTTCCAGAAAGATCCACAGCTCAGTCTGGTCAGTGCCACCATCAAGTCTCTGAGAGAGGAAGGGGTCGTCTTCCCATCCTCTGGGTCACAGGGGTCCAGCCTAAAGGGCACCACTCCAGCTGTTAGTAAACCATCTGACGATGACGACCTAGCCAAAGCCATCGAGCTGTCCCTGCAGGAGCAGAAGCAGTATGTGGAGACGCGACCTCTCACCGTGACCGCCGATCCCCCCTTCAATACCAACGGTGGCGGGGGTAGCAGGGATTCCCGGAAGTTGCGGGCGCTCTACGACTTTGAGGCGGCCGAGGACAACGAGCTCACCTTCAAGACTGGAGAGCTTATCCTCGTCCTGGACGACAGTGACCCAAACTGGTGGAAAGGAGAGAACCACAGAGGAGTAGGTCTCTTCCCATCCAACTTTGTCACGACCAACCTCAACGCTGAGCCTGAACTAGTAACGTATGTGGAGAAGACGCCAGCCCCGGAGGAGCCCAGCATAGAAGCCAACGTAGAGCCTGAGCCTGTCTTCATAGATGAGgAGAAGATGGACAGAGCGCTGTATCTGCTCCAGAACACAGACCCTGCTGATGCAGCACCTGACTGCCAAGAGCTGGTCCAACTGGAGGGTGCTTGTGAGCAGATGAATCCAATGATTGATGACAAGCTGGAAGACATTGACAGGCAACACTCTGAGCTGTCTGAGCTGAATGTGAAGGTGCTGGAGGCCTTGGAGCTCTATAACAAACTGATGAACGAGGCACCGTTCTACACAGCCTACTCCAAACTGCAGTCCCAGCAGCAACCGCAGCAGCAGCCCCAATACGCACCTGCCTCCCAAGTCCCCATTCAGggttACCCAGGTCAGCCTGGTGGTTCCTACATGCCTCCAGGGATGCCCCAGGGCCCCCCAGCCCAGCAGGCCTACATGGGCTCTGACCAGCCCGGACCCCTCCACTCACTCCACCCTAACGTCACATCTCCCAACGGTCAGCCAGCACAGCTTCCTTACAGTGTACCATATGCACCTGCCGGATACCCTCCACAGATGGGTGTGGCCCCACAGATGGACATGTCGGCCTATCAGAACGCCAACCTGCCTCCAGCCTCCTATCAAATGGCTGCTCCATCGCAGCAGGCCCCACACCAGCAACAGGCCTACTATCAGCAGCCTCTCCTATAAAGGCAGGCCGTGCAATACTATCAGGGCTGTCTGAGTGAGAAGCAGCATATCCCCACCAACAGACACAGTACAATGACACAATCCTCCCCCTCTTTTGTCCTTTATGAAAAGATTATGGCAATGGTATGAGGTATGCTTGTAtaggcttgtgtcccaaatggcaacctattccccatgtagtgctctacttctgaccaggacccatagagctctggtcaacagtagcacACTATTTGGGGAAGAGAGTCATTTGGAACACCGCCTAGATTGTCACAAAGGTCAGTGTCTTTCTGAGAGGTGTGGAGCCCACAGGAGGAGACCAAATGCCAACCTACCACCCACCCACCACGGCCTGTTTGGAAGGGATGAATGTTTTGAAACAGTATGTGAAATAAGTACTTTTCCTTGTCTTGGTTTGCCTCTTTAAAACAGTGAAGGGGGCAGCTCATCAGCTGATCATTTCCAAACTGCTTCATTAATGTTGTGTGTATTTGTCCTTGTTCAGAgatatcttttgtttgtttgctttttaATCATCTTctatttttaaatgtttgtttttctgttcACCGTCTGGTTTGGTGTCTGTCTGGAGATCAGTCCAAATGAAGGAACCCATGGCTGGCCAGGACCAGGGTTCGAGTCAATtcgaaatggaattgaccccaaccctggccaGGACttttctatccccctctctaaCAGCGTCATCCACTTTAGTTGACCCTTCTTGGGGCCAAAGGTTATGGAGTGCTCTAGGTATGTCGTCTTGTTCTATAATCAGTACCATGTTTTATTAGATACTATGGTACAGTTAGAGATTAGCTTCCCATACACTGCCTGCCTTGCAACACTCTTTGGGTGTTTAATATGTTCTAAGAGTGACACATTTTATCATTTTCATTTCTGTGCAACTTCGATGTGATTTTGTTATGAAATGAACTGAAGTCATTGTTAAATACATTTAGAATTGTGACCATGCAGCCTTTCCAAATTAATGCTATTGTAGGTTTAGTGCACATTTTCATACACAACTTTTTTAGTAATGCAAATGTAATCTAGCCTGGGTGCCTGTCTGTTTCTACTCTAttgccaactccttatggaattTGTCATGTTTGCCTTGACAATGACAACAATgcagttggcaagacagcataaacagatctgggaccaggctaaatgGAATCTTCAGATTATAGGGTTGTTGATTAGCAACATTCATGTGCCAAGGCTCTTGGCAACTTGGTAGATGTCCTATATACCTTGAGTAACAAGTTGTAATCGCAAGGAATAAGAGATTGATTGGAAAATGAGCCAAGTCCTAGCTATATCTTTCTATGGTCCTTCTTCACTCACTCTTCTGTTGAAAAGGCTTTTGACCATCGACGTTAGTAATAGATGTTTGTAATTATTAAATTAATATCGGTGTGCTTTTCATGTTTCTGGGCTGTAGGAGGTCACGTTTTCATATAAATCTTTTGTGGAAATAATGGTTATCTTTGGAATGGCTGTTTGCTCTGCATTTGGACCTTTAATTAGAaattgtaaatgacatcacttGTATATTATCTTTCTCTGGATTATATCCATATGATCAGCTATTATTTTATGGTTTATAAATGTATGGTATGCTTTCCCCTTTAATACTTTTTGGTTTTACTTTATTTGTGTCAGAACAAATGGCTACCGTTAGAACTGGCTCattgataaatgtgtgaattgTACAAAGTTTTATAGCTAGAGAACTGTTTGGCCTAAAATGTTCATCTGAAATTAATGAAACTGTTGGGTGTAACCGAGGACCAGATTTatttactcccccccccccttagcTGGATAGTCTACTCTGACTAAAATAATAACTGTGTCCACTTTATTCTTTTCTTTATCTGCATCTGAAAAGGTGTTGTAAATTAGATGTAAAATATCTTCTGGCATTGTCGGTATTGCACCTTAACTTTGTAAACAGTTTATTTACCACTGGATGCCTTGTTTTCTTTAGAAATAAAATCAAAATGGAAACATCTTTGGGAAAGGAATTGACCCTGAAGCTGCTGTATATCTAGaactctatatatttaaaaaatattccaGGGAGTGTTCCCATTCAGTACTACCGATTTATTATAACTGACTCCATGTTTTGTTACTTCAAGATTTCTCTGTGTTATCATTGTAAATCCTTTTGTAACACCGTCAACTCTAATAttctttaaaataaaatgtacctGTGTTCACAGCTTTCTACTGATGGATGCAGTTTTTTTCATGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2065726 lncRNA upstream 69623 36999845 ~ 37051312 (+) True G1805533
TU2065686 lncRNA upstream 177586 36942191 ~ 36943349 (+) False G1805500
TU2065687 lncRNA upstream 178220 36942061 ~ 36942715 (+) False G1805500
TU2065688 lncRNA upstream 178220 36942191 ~ 36942715 (+) True G1805500
TU2065671 lncRNA upstream 198984 36920328 ~ 36921951 (+) False G1805487
TU2065847 lncRNA downstream 76459 37222709 ~ 37238623 (+) True LOC110501814
TU2065916 lncRNA downstream 189727 37335977 ~ 37337154 (+) True G1805697
TU2065923 lncRNA downstream 211900 37358150 ~ 37358976 (+) True G1805703
TU2065947 lncRNA downstream 233425 37379675 ~ 37429633 (+) True G1805725
TU2066024 lncRNA downstream 349466 37495716 ~ 37496295 (+) False G1805796
XM_021579643.2 mRNA upstream 150544 36949459 ~ 36970391 (+) True LOC110501808
XM_036959223.1 mRNA upstream 203709 36838714 ~ 36917226 (+) True LOC110501807
XM_021579640.2 mRNA upstream 600173 36435019 ~ 36520762 (+) False LOC110501805
XM_036959215.1 mRNA upstream 600173 36435308 ~ 36520762 (+) False LOC110501805
XM_036959207.1 mRNA upstream 714716 36383737 ~ 36406219 (+) False LOC110501803
XM_036959227.1 mRNA downstream 7318 37153568 ~ 37221890 (+) False LOC110501812
XM_036959228.1 mRNA downstream 22547 37168797 ~ 37221890 (+) True LOC110501812
XM_021579651.2 mRNA downstream 76411 37222661 ~ 37238631 (+) False LOC110501814
XM_036959229.1 mRNA downstream 76415 37222665 ~ 37238631 (+) False LOC110501814
XM_036959230.1 mRNA downstream 108552 37254802 ~ 37357452 (+) True LOC110501815
TU2065389 other upstream 677858 36435000 ~ 36443077 (+) True LOC110501805
TU2065354 other upstream 757005 36363596 ~ 36363930 (+) True G1805191
TU2064995 other upstream 1245483 35874562 ~ 35875452 (+) True G1804873
TU2064746 other upstream 1361509 35740439 ~ 35759426 (+) False LOC110501795
TU2060607 other upstream 4206753 32910793 ~ 32914182 (+) True G1800754
TU2067606 other downstream 933616 38079866 ~ 38186629 (+) True LOC110501842
TU2067723 other downstream 1152877 38299127 ~ 38302575 (+) False G1807306
TU2067724 other downstream 1152877 38299127 ~ 38316253 (+) False G1807306
TU2067728 other downstream 1152877 38299127 ~ 38302575 (+) False G1807306
TU2067729 other downstream 1152877 38299127 ~ 38316253 (+) False G1807306

Expression Profile