RNA id: XM_036959227.1


Basic Information

Item Value
RNA id XM_036959227.1
length 4436
RNA type mRNA
GC content 0.44
exon number 14
gene id LOC110501812
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 37153568 ~ 37221890 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCACAGAGTAGCACTACTGCACGCGCGCAAACAGATACCGGTTGGTTAATTCACACGAACTGTTTACCAAGAAAGCACTGTATCGTATCGTTCCTCTCTCTGTTGACAGTTTGTAAGCAACAGTGCAAAGCTGGAGGAACCAACTCAACAACCGCAACAGCAGTTGCCATGGACCGGGACAGAGAGGCAGCCTCCCCCTTGGACCGACGAACTAGCCGAAATGTCCCGGCACATCTACACCCGTCACGGTGCAGGCGATGGACTCCAGAAGGTGAATAGAGGGACCTACTCCAGACGCAGCCGGCTAAAGAGGTCTGACGGGAGCACCAACTCCACCAGCTTCATcctcagacagGGTTCAGCTGACTCTTACACTAGCCGACCATCGGACTCAGATGTCTCCTTGGAGGAGGAACCGGCAGGAGGAAAGCTGGAGAAGGAGCAGCAGGCTGCTGTACAGCTGGAGAGGGCCAAGGCCAAAGCGGTGGCCTTTGCTGTGAAGACTAACATCAGTTACTGTGGAGCCCTGGATGAGGATGTCCCTGTGGCAGGAACCGCCATCTCCTTCGATGCCAAGGACTTCCTGCACATTAAAGAGAAGTACAGTAATGACTGGTGGATCGGCCGGCTGGTGAAGGAGGGCTGTGAGATTGGATTCATCCCCAGCCCTCTGAAACTAGAGAACATCCGTCTACAGCAGGAGCAGAAGAGAGGTACACGCTCTTACGGTAAGTCCAGTGGGAATTCCTCCTCCAGTCTAGGAGACATGGTTTCAGGCGGGTTCAAATCCAACCCTCCCTCTGCAGGAAAACAGAAGCAGAAAGTGACTGAAAACATCCCTCCCTATGACGTGGTCCCCTCCATGAGACCAGTGGTCCTGGTAGGACCGTCCCTGAAGGGATATGAGGTGACAGACATGATGCAGAAAGCGCTCTTTGACTTCCTGAAGCACAGGTTTGATGGCAGGATATCTATTACGAGAGTAACAGCAGATATAGCTCTGGCCAAGAGGTCAGTGCTCAACAACCCCAGCAAGCGGGCCATCATCGAAAGATCCAACACCAGGTCCAACCTAGCGGAGGTTCAGAGTGAGATTGAGAGGATATTTGAGCTGGCCAGATCCTTACAGCTGGTGGTCCTGGATGCTGACACAATCAACCATCCAACCCAGCTCATAAAGACATCCTTAGCACCTATCATCGTGCATGTTAAAGTATCCTCTCCTAAAGTTCTTCAGCGGTTGATCAAGTCGAGAGGGAAATCCCAGAGCAAACACTTGAATGTGCAGCTGGTGGCAGCAGACAAACTAGCACAGTGCCCTCCGGAAATGTTTGACATCATTCTGGATGAGAATCAGCTGGAGGATGCATGTGATCACCTGGCAGAGTACCTGGAAGCCTACTGGAGGGcaacacacacctccctgagcaccCCTCTCAACCCTCTGCTGGGCCGCAACCTGGGATCCACTGCCCTCACTCCGTACCCCACAGCTATAACTGGGCTGGTCAACCAACCGGGTCAAAGAAACACAAACAGGAACAGCAATCACACAGCAGGAGAACACTCGCCATCAGACGAGAACTACCACAATGAGCGGCAGAGGAAGAGCCGTAACCGCCTGTCCTCCGGCTCGCAGCACAGCCGGGACCAGGTCCACTACCCCCTGGTGGAGGAGAATTATCATGACCCCTATCAGGACACGTACAAGCCCCACCGCAACCGTAACGGCTCCCCCGGAAGCTACAGTCATGACTCCAGGCACAGGCTTTGAGCTGAAGACCCCCTTATGTCACTTAGGCTTCTCTTCCCTTCACAGTGGGTACGACACAGCCACACGACCACTCTCTAGTTTAATTGTACTGTAACCAACTTTTTTTATAATGTGTTAGTACCTCGCTTTTCCTCTGGCACTGGTTCACGGTGAAAACGTGAACATTGACCAACTAAAAATCTAATCTCTATGCCTTTTTCTTATGAGGGAGACAAAAAATAGGATGAGGGGCAGATTTTCACCATGGTTTTTTTCTAAGGGAAGGCCCAACTCTGGGCTTGTCTTCTTTTTAACATGGCAAGGCCTTGACATGTTGGTGTGAAAGGGGTGGCCATGTGGTCTGGCCATCGACTCCCTGTTGTCTCAGTGTTAGCAGGGCTAGCTGTCGTGGTGGTCTTGGTGACCCATCAACACCTGCCTCGAACCAGTGCCAGACAGCGTCAAGCGTCCCTTGATCAGCACAGAACTTCTTTGCACATTTCCAGGAGCCAATAGCAGCAGAGTCAGTGCACTGTATATTTAATTAATGTCACTAAGTTGTTTGAAATTGTCTTGGATTTGAGTGTTTTCAGTCCTGTAGCCTACAACCAGTTTCTCAGAGTCGGCAAAGTTCCTGTTTGTCAAAATGTTGAGGGATTTTTCTAGCGGGGTCCTGAATCGGAATCTTCTAGTTTCCAGGGCTTTTATCCCCTTCTTCTCCTCAATGATACTTAGCTAATGCCattagggcggcagggtagcctagtggttagagcattggactagtaaccgagagttcaaatccccgagctgacaaggtacaaatctgttgttctgcccctgaactggcagttaacccactgttcgtaggctgtcattgaaaataagaatttgttcttaactgacttgcctagttaaataaaggtttaaaaaataataataattgcgaCGTGCCGCACAGGACAAGAAATCACACTTTTGTAATGAAAATTTGCTAAGTAAATTAAGTGAGTTGCAAGTTTCATATCTTGTGCTCTTTCAGGAAAGGGTGCGTCCCTTCGTTATATACAGTACACTCTAGTGTGAGGACTATTCCTATCAGTTTTTAGTATGCTGCAACCAAAGGAAATAGCCTAATTTAAGTTTTTCCATTAGTACTCATGACTAGGAATaaaatatacagtagagagggatGATATGCCCATTGAGCTTAATTTTAACTGTTTAAATGGGTTTCATAATTGACTAATGATCGAAGGATAGGCTTTAGTATAGATGGATATACTTCCAATCAGGGAAATATTGATCATTTGAATTGAGGTATACCCCATTCCATTTACTGTACATGCAGCCTGTTATAGTGATGCCATTTGCATCATATTTTATTGTCTTTTAAATGGTCTTGTGAATTCAAGTGTAATATATTCAAAGAAAGTCCTGCTTGGCAAGTAAAGAAATAACGTCTGTCCGTGGACCGACGTTTCATTGGTTTAGAATGATCAATGGCAGCATGTCTTTTTgtcaatatacagtatgtcatggAATAATGATTCAGTGCTGTTATGTATGTGTTAGGCCAGAAAAATCCCTAGGAGACTGTAGTTGAGTGAGTGACTGTTGTTTAGGACAGTCTCAATTGAACAATTAATTTAGTCAACAGTAACACATAAGCGGATGAGAGCGCTTCATTCAGTCTGCTATGAAGTTATATTGTTGATTTCATGAAACAAAGAAATGGTTTTCTTTGGTCATAATTActatgtaaagcactttgtgtgTCTAGAAAGGCGATATATAAGTCAAATCaattaattgtaattatttgccaaCCATCAGCTCTTCTTTTCAATGCCCCATTTAAAAGTCTTCCATGTCCTGgccattaaaaataaataatgttgTTTTTTAATGAACGATTTTACTTTCCTAAGCATTGCATATCAAAACACCATGACAAATGAATTGTTCAAAGCCTTATTGCTTAACCCAGGCCTTGTTTTAAACTTTTTTGGGGGGTACTGTAGCAATGGAGGGGCTTCTCTCCTATCCATATACATATCCTCAAAATGTAGCATTTTATTTCACAGTTTTTATGGTCTAAATGGTTAGGAACAATTATAGAGGTTTAGTCATatgaagagagtgtgaagggTACAGACTAGGGAGTTCTGTATAGAGGTTCATGTCAGAGAATGTCTCTCTGTATGCTACCAGTTATGCATAGATCACCAATAGAGGGTATGTATCAGAAACCCCCAACCAAACAAATCACAacatattttatttgttttcttCGAATACCTTCTTCTGTTGCCAAGATAGCTTGATTTCTGTTAGTGCTGTGTTCTATAAAGGCATGCTGGTAAAGAGAAAAACAATTGGACAAACTAATCtagagaaaaagagaaatgtaCTATGCAAATGTGTACAGTGCTGCATGTTGATGCTTTTCCTCCCTCGGCTACTTAGCGGCTTCGTTGGAGTTCAATAAGATTGTGTTCTTGTTATTTTTGGGAAAGATAAAATTCAAAAGGGAAATGCGAAACTGCATGACTAATACAACTTTTTAATTTATCAAGAAGAAAGATAAATATGTTTTAtgggaaattgatgtaaaatgaGAACTACCTAGTTAAAATGAACTTTTTTATCAAATAAATTCAGAGCTCTGTTATAATGATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2065726 lncRNA upstream 102256 36999845 ~ 37051312 (+) True G1805533
TU2065686 lncRNA upstream 210219 36942191 ~ 36943349 (+) False G1805500
TU2065687 lncRNA upstream 210853 36942061 ~ 36942715 (+) False G1805500
TU2065688 lncRNA upstream 210853 36942191 ~ 36942715 (+) True G1805500
TU2065673 lncRNA upstream 231617 36920631 ~ 36921951 (+) True G1805487
TU2065847 lncRNA downstream 819 37222709 ~ 37238623 (+) True LOC110501814
TU2065916 lncRNA downstream 114087 37335977 ~ 37337154 (+) True G1805697
TU2065923 lncRNA downstream 136260 37358150 ~ 37358976 (+) True G1805703
TU2065947 lncRNA downstream 157785 37379675 ~ 37429633 (+) True G1805725
TU2066024 lncRNA downstream 273826 37495716 ~ 37496295 (+) False G1805796
XM_021579647.2 mRNA upstream 7318 37120935 ~ 37146250 (+) False LOC110501811
XM_021579646.2 mRNA upstream 7318 37120937 ~ 37146250 (+) True LOC110501811
XM_021579643.2 mRNA upstream 183177 36949459 ~ 36970391 (+) True LOC110501808
XM_036959223.1 mRNA upstream 236342 36838714 ~ 36917226 (+) True LOC110501807
XM_021579640.2 mRNA upstream 632806 36435019 ~ 36520762 (+) False LOC110501805
XM_021579651.2 mRNA downstream 771 37222661 ~ 37238631 (+) False LOC110501814
XM_036959229.1 mRNA downstream 775 37222665 ~ 37238631 (+) False LOC110501814
XM_036959230.1 mRNA downstream 32912 37254802 ~ 37357452 (+) True LOC110501815
XM_021579660.2 mRNA downstream 542839 37764729 ~ 37783640 (+) False LOC110501820
XM_036959241.1 mRNA downstream 553889 37775779 ~ 37783640 (+) True LOC110501820
TU2065389 other upstream 710491 36435000 ~ 36443077 (+) True LOC110501805
TU2065354 other upstream 789638 36363596 ~ 36363930 (+) True G1805191
TU2064995 other upstream 1278116 35874562 ~ 35875452 (+) True G1804873
TU2064746 other upstream 1394142 35740439 ~ 35759426 (+) False LOC110501795
TU2060607 other upstream 4239386 32910793 ~ 32914182 (+) True G1800754
TU2067606 other downstream 857976 38079866 ~ 38186629 (+) True LOC110501842
TU2067723 other downstream 1077237 38299127 ~ 38302575 (+) False G1807306
TU2067724 other downstream 1077237 38299127 ~ 38316253 (+) False G1807306
TU2067728 other downstream 1077237 38299127 ~ 38302575 (+) False G1807306
TU2067729 other downstream 1077237 38299127 ~ 38316253 (+) False G1807306

Expression Profile