RNA id: XM_036959242.1



Basic Information


Item Value
RNA id XM_036959242.1
length 600
RNA type mRNA
GC content 0.50
exon number 3
gene id LOC110501828
representative False

Chromosome Information


Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 37804108 ~ 37811761 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGTTTAATTTCAAGAATGATGATTCTATTTTATTTTCAGGCCACCTTCTACGAGGACAGAAACTTCCAGGGCCGCTCTTATGAGTGCAGCTCCGACTGCCCCGACATTTCCTCCTACATGAGCAGGTGCCAATCCTGCAGGGTCCAGAGTGGATGCTTCATGGTGTACGAGCGCCCCAACTACATGGGAAACCAGTACTTCATGAAGAGGGGAGAGTACTCTGACTACCAGAGTATGATGGGAATGAGCGATGGTATCAGGTCCTGCCGCATGATCCCCATGCACCGTGGAAACTACAAGATGAGGATCTATGAGAGGGAGAACTTCGGAGGTCAGATGCACGAGATGATGGACGACTGTGACTCCATCCAGGAGCGTTACCGTATGTCAGACTGCCAGTCCTGCAACGTGATGGACGGCCACTGGCTGATGTACGAGCAGCCCCACTTCAGAGGCAGGCAGATGTACATGAGGCCTGGAGAGTACAGGAGCTTCAGAGAGATGGGCATGAGTGGCATGAAGTTTATGAGCATAAGGCGTATCACTGATATGTGCTAGACATCTCATATTGACCAAATAAAAGTGATTAGTAATCCAAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU2067120 lncRNA upstream 151917 37645788 ~ 37652191 (+) True G1806785
TU2067037 lncRNA upstream 264468 37539406 ~ 37539640 (+) True G1806716
TU2066042 lncRNA upstream 278975 37524919 ~ 37525133 (+) True G1805813
TU2066024 lncRNA upstream 307813 37495716 ~ 37496295 (+) False G1805796
TU2067242 lncRNA downstream 36266 37848027 ~ 37848640 (+) True G1806881
TU2067243 lncRNA downstream 37024 37848785 ~ 37849012 (+) True G1806882
TU2067244 lncRNA downstream 38517 37850278 ~ 37850545 (+) True G1806883
TU2067480 lncRNA downstream 97069 37908830 ~ 37912450 (+) False G1807088
TU2067481 lncRNA downstream 97235 37908996 ~ 37912450 (+) False G1807088
XM_021579664.2 mRNA upstream 9160 37794009 ~ 37794948 (+) True LOC110501825
XM_021579662.2 mRNA upstream 13692 37789357 ~ 37790416 (+) True LOC110501823
XM_021579660.2 mRNA upstream 20468 37764729 ~ 37783640 (+) False LOC110501820
XM_036959241.1 mRNA upstream 20468 37775779 ~ 37783640 (+) True LOC110501820
XM_036959230.1 mRNA upstream 446656 37254802 ~ 37357452 (+) True LOC110501815
XM_021579669.2 mRNA downstream 3369 37815130 ~ 37817697 (+) True LOC110501830
XM_021579668.2 mRNA downstream 10127 37821888 ~ 37822751 (+) True LOC110501829
XM_036959074.1 mRNA downstream 12930 37824691 ~ 37827045 (+) True LOC110502126
XR_005038830.1 mRNA downstream 49731 37861492 ~ 37897856 (+) False LOC110501832
XM_036959244.1 mRNA downstream 49735 37861496 ~ 37902868 (+) False LOC110501832
TU2065389 other upstream 1361031 36435000 ~ 36443077 (+) True LOC110501805
TU2065354 other upstream 1440178 36363596 ~ 36363930 (+) True G1805191
TU2064995 other upstream 1928656 35874562 ~ 35875452 (+) True G1804873
TU2064746 other upstream 2044682 35740439 ~ 35759426 (+) False LOC110501795
TU2060607 other upstream 4889926 32910793 ~ 32914182 (+) True G1800754
TU2067606 other downstream 268105 38079866 ~ 38186629 (+) True LOC110501842
TU2067723 other downstream 487366 38299127 ~ 38302575 (+) False G1807306
TU2067724 other downstream 487366 38299127 ~ 38316253 (+) False G1807306
TU2067728 other downstream 487366 38299127 ~ 38302575 (+) False G1807306
TU2067729 other downstream 487366 38299127 ~ 38316253 (+) False G1807306

Expression Profile