RNA id: XM_036959250.1


Basic Information

Item Value
RNA id XM_036959250.1
length 7424
RNA type mRNA
GC content 0.54
exon number 47
gene id LOC110501832
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 37861492 ~ 37902868 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCCCAGGCTcctgagcctgtgtagggatcaGACATGGATTATTGATTTTAACCATAGAGGCAAGGAGCTTGTTGAGTGATGACATGGTAGTCAGTACAATTTGAGTATttttatccacataatttttgtaTTTTGGGATCTGTTATTTTCATTCTGCCGTAAAACCCaacaaagaagaagaagtggGCGCAGCCTTGTCTCGTGATCACAACAGTTCAATCGACCCTCGACTCGTCCTGTCTGGCTCGGGGGTCACTGTGCTTTTGGGAAGATAGGGTACCTACTCCACTTCGCAGGAATTTACCTCATTAACTGTATTCTTACAGGGATGTACAAGGAGTCCAACACACAGGCTAATGCCTCTGCCTTCCTTCCTGTTTGCTCTATTACAAAGTAGGGGGAGAGTGAGAAGAATCATGTGCCTCCTGTGAGGGAGCAGTGACATGGAGGCTGAGGACAAATCCTCCTCCTCTACGCTGGATTGCAGTGTGAAGCCTCCCATCTCCCCTGGCAGCCCTTCTCACCTGACACACTTCAAACCCCTGACTCCAGAGCAGGACGAGCCTCCGCTCCGATCAGCCTACAGCTCCTTCGTCAACCTGTTCCGCTTCAATAAAGAGGAGGGGCGGCCTCCCTCGGTGACAGAGAAACCGGATGTGGCTTTGATGTCAACCACTGGGGAGCGTAGGAGCTGGACCAGCCCAGCACATTCCATCCACGGCTCTGGGACCCATAGCAAACAACACCCCAACCTGCTCCGTAGAACATCCACcgcctcagTGGACTGGCCATTATGGCCGGGTCAGGAGGGCCGTAGGAAACCAGAAACCCCCCTGAGCACTCACGACCCCCGTACGGCTGTTCAGCTCCGCACTGCTCTGAAAAGACTCAAGGAGATCATGGAGGGAAAGAGCCAGGACAGTGACCTGAAGCAGTACTGGATGCCAGACAGTCAGTGTAAAGAGTGCTACGACTGCAACGAGAAGTTCACCACCTTCCGCCGTCGACACCACTGTCGGCTCTGCGGACAGATCTTCTGCAGCCGCTGCTGCAACCAGGAAATCCCTGGCAAGTTTATGGGCTACACGGGAGACCTGCGGGCCTGCACCTACTGCCGTAAGATCGCTCTGAGCTACTCCCAGTCTGCAGATTCTGGCTCCATTGGAGAGGACCTGTCTGCTCTGTCTGACTCCTCCGTCAGCTCCGTCTGCATCCTGGAACCCAGCGAGCCTCGCACCCCGGTTGGAGGACGCAAGTCCAGCCGTAACATCTTCCTAGAGGAGGACCTGGCCTGGCAGAGAGttgaagagacagaggagagagacacactaGGCGCTCTTCACCCCCcatgtcctctccctccctgcccacTCCCCTCCGCCTGTCATTTTCTTCCCCTGTATAATGGAAACACTGAGATTGGGATAAGAAAGAATTTGATTCACCAGGAGTCTCAGAGCAGAGGTATGAATTCTAGACTGACTGGGCTTCAAGAGGATGGAGGCAAGTCCCCAATAAGGAAGCGGTCAGCCAGTGTGACCAACCTGTCCCTGGACCGGTCTGGCTCCTCCATGGTGCCCTCCTATGACAGCTTAGTGAGCCCCCAGACCAGTAGGACCATGCCCAAACCAGACcacagtgaagaggagaggaagatacTGCTGGACTCGTCCCAGCTCAAAGACCTGTGGAAGAAGATTTGTAACAACAGTACTGGCATGGAGTTCCAGGACCACCGCTACTGGCTCCGTACATACCCCAACTGCATTGTGGGGAAGGAGCTGGTCAACTGGCTGCTGAGGAGTGGAACCATCTCCACCAGGGCCCAGGCGATAGCCATTGGTCAGGCTGTGGTAGACGGTCGTTGGTTGGAATGTGTCACTCACCACAACCAGCTGTTCAGGGATGAGTACGCTCTCTATCGCCCCCTCCAGAGCACAGAGTTCTCTGAGACCCCGTCTCCTGACAGTGACAGTGTCAACTCTCTGGAGGGACACTCAGAACCCTCCTGGTTCAAAGACATCAAGTTTTGCGACAGTGACACAGACCAGGTGGCTGACGAGAATGACTATGTCACGACCAACTCATCCAACCCCAGTAAGAGGACGTCAGTCAGTAGTTTCCAATCAGCGGTGGACAGTGACTCTGCTGCTTCCATCAACCTCAATATGGAGCAGGACAATGTCAACTTCCACATCAAGAAACAGTCCAAGTACCCCCATGTACCACCGCTCCCCAAGGAGCAGAAAGAGTACCTGGTCTCAGAGGACGGAGGACAGAATATCTCCATCAGTGACGCTTTCATCAAAGAGTCCCTGTTTAACCGTCGTGTGGAGGAGAAAGCTAACGAGGTGCTGTTCACTCCTCTGGGCTGGCACCACAGCTCCCTGGACCAGCtcagagaggagaatggagagaaggaggCCATGGAGAGGCTACTCTCTGCCAACCACAGCCACATGATGGCGCTGCTGCAGCAGCTGCTGTACAGCGAGTCCCTGTGCCTCTCCTGGCGTGACATCATCGTTCCCGTGGTGAGGCAGGTAGTGCAGACGGTGCGGCCGGACGTTCGCAGTTGTGATGATGACATGGACATCAGACAACTGGTTCACGTCAAGAAGATTCCTGGAGGGAAGAAGTTTGACTCTGCGGTAGTGAATGGCTTTGTCTGTACCAAGAACATTGCCCACAAAAAAATGAACTCGTACATCAAGAACCCCAAGATCCTGCTTCTGAAGTGTTCCATAGAGTATCTCTACAGAGAGGAGACCAAGTTCACCTGCATTGACCCCATTGTGCTTCAGGAGCATGAGTTTCTGAAGAACTATGTTCAGCGTATAGTGGACGTGCGTCCCAACCTGGTGCTGGTGGAGAAGACCGTGTCTCGTATCGCTCAGGACATGCTGCTGGAGCACGGCATCACACTGGTTATCAACGTCAAACCGCAAGTCTTGGACAGGGTGAGTCACATGACCCAGGGGGACCTGGTCATGTTCATGGACCAGCTGCTCACCAAGCCTCGTCTGGGAACCTGCCAAAAGTTCTACCTACACTCCTTCCAGCTGGCCAACAATGAGTTGAAGACTCTGATGTTCTTTGAGGGCTGCCCTCCCCAGCTAGGCTGTACCATAAAGCTTCGCGGGGCGTCTGAGTACGAGCTGGCCAGGGTTAAAGAGATCATCATCCTCATGgtgtgtgtggcctaccactcccAGCTAGAGATATCCTTCCTCATGGATGAGTTTGCCATGCCTCCCAGCCTGGCCAAGACCAGCTTCCCCTGTCTCCTGGAGAGCACTACCATCGTGGAGGAGGAGAGCCAGGAAAATGAGACCGACCAGAGCACCCTCTTCCAGGGAGGAGAGACTGTGCTAGGGGACGAGGAGAATTCTGTATCGGAATCCTCCTCGCCTAAAGATGTCGAGGTTGTCAAAGTCGCCAAGAACCAACTcctgtcctcctcatcctccctggTGGCCGAGGGGATGGAGTCAGCAGAGGTCATGACCTCCACGCCGTTGTCCAATCCCCTGGCGCCGCCACCACCCTACCTCATTGATGACCTAGAGGAGTTAACAGATGAGATTGGGCTGGAGCAGGGGGAGGAGACTGAGGGGGGGAGCGGGTCAGGGGTTCTGGGGAGGCGTGAGTCGCAGGAGGAGAGCTCTGCTTCGGAGACGGCCCCCAGGCTGTTCAGAGACCCCCTGCAGGATGACACAGGGCTGTTTGTCACAGAGCAGGTGGCCTCGACGGACGACCATCTCAGGACGCTGACGGCAGGCTTCAAACAGGAGCTGAAGGACATCATCCTGTGTGTCTCCCCCTTCATCACTTTCAGAGagcccttcctcctctcccccgctGGCCTACGCTGCCCCAGCAGAGACTACTTTCCTCAACAGGTGTACCTCTCCCCACTGCTAAACAAGGACTTCAAAGAACTAGACGGTCGACGTAAGCGACAACTCCTCAAAGACTCCACCCCATCCGGTGGAGGCGTGGCCAACGGAGGCCCTCGCCCCATCCAGGTGTTACCCTCCCACCGCCTTACCAGTGCCCGCATCGCAGAGCATCTGGGCAGCAGCCAGGACTTGGCCAAGATGCTGGCAGACTACCGTGCCCAAGGAGGCCGACTCCGACAGGAGGAGGCAGACCCCTTCGCCCAGCCCCTATCTCAGCCACCGGTCCGGGAGGCTCTGCCGCCCAAGCACCCCGTCAAGGCTGATTGTGAGGAGGAGAAGCCAGCGGGACAGAACGACATGACCTGGGCCTCCAAGCTGGACTGCCTGAACCCAGTGAACCATCAGAGACTCTGTGTTCTGTTCAGCAGCTCCTCTGCCCAGTCCAACAACGCCCCCAACCCTTGCGTCAGTCCCTGGATGGTCACGATGGAGTTCTACGGAAAGAACGACCTCACTCTAGGAAtattcctggagagatactgttTCAGgccGTCCTATCAATGCCCCAGTATGTTCTGTGAGACTCCCATGGTGCACCATGTGCGGCGGTTTGTCCATGGCAGTGGCTGTGTTCAGATCGTACTGAAGGAGCTGGACTCTCCTGTGCCTGGATACCAACACACCATCCTCAACTACTCCTGGTGCCGCATATGCAAACAGgtgaCTCCTGTGGTGCCCCTTTCTAATGACTCGTGGTCCATGTCCTTTGCTAAGTACCTGGAACTGAGGTTCTATGGTCACCAGTATACCAGGAGGGCTAATGCTGAGCCCTGTGGCCACTCCATCCACCATGACTACCATCAGTACTTCTCCTATAACCAGATGGTGGCCTCCTTCAGCTACATCTCAGTGAGACTGCTAGAGGTCTGCCTCCCTCCTCCTAAGATCTTCATCAGGAACCAGGGGCCCTCCAAGGGCCGGATGCAGCAGGACCTCAAGGACTTCTCACAGAAGGTGACTCAGGTGTACTTGGCCATAGATGACCGCCTCACCTCCCTGAAGACGGACACCTTCAGCAAGACACGCGAGCAGAAGATGGAGGACCTGTTTGCACAGAAAGATATGGAGGAGGCAGATCTGCACAGCTGGATAGAGAAGCTGCAGGCTCGTCTCCAGGCCTGTGGTAGTGACTCCCCCCAGCAGCTCCAGACTGTACTGGAATCAGTGGTAGTGAAGAAACAGAGCCTGTGTGAAACACTGCAGTCTTGGAACAGCAGGCTGCAGGACCTGTTCCAGCAGGAGAAGGGCAGGAAGCGTCTGTCTGTCCCAGCCAGCCCTGGGAGACACCGACAGACAGACGACAGCAAGCCAAGTGCTCTGGAGTCCTCTCCACGCAACCCCTCCCCTTTAGTACAAAATGTTGACAAAGAGGATCGTCACCTCACTGCCATGCCCTCAAGCTGGGGGTCGTCATTGCTAGCGTTACCGTCACCAGGGGAGCCAGGCTCAGAACCCCTCTCGTCTGGACCCTGCTTTCCTGACCAGGATTCCGTCAGTATCCCAgaggATGTGTTTGATGGACACCTGTTGGGCTCCAATGACAGCCAGGTGAAAGAGAAGTCCACCATGAAGGCCATTCTAGCCAACCTGATGCCAGGCAACAGTTACAACTCTATCCCATTCCCATTTGAACCAGACAAGCATTACCTGATGTATGAGCATGAGAGAGTGCCCATCgccgtgtgtgagagagaacccAGCTCCATCATCTCATTCGCTCTCAGCTGTAAGGAGTATAAGAGTACTCTGGATGAACTGTGGAAGACAACATTGAAGACAGGAGGCGAGGACACCACCAGCTCTGGAGAGAGCCGGGTCAAGAACAGCCCAGCCAAGCCCAATGAGACGGCCTCCTCCCAGATGGGTCTGGGCCGCAGCAGCATGGACTCTGAGCCTCTTAAAGATGCAGACATAGGAGACAACCATAAGAAGTCGACAGGAAACCCTCATATTGAATTACaGTTCTCTGATGCCAACGCTAAGTTCTACTGTAGGATCTACTATGCTGAGGAGTTCCACAAGATGAGAGCGGAAATAATGGAGAGTACGGAGGATGACTTTGTTCGCTCGCTGTCCCACTGTGTCAACTGGCAGGCCCGCGGTGGCAAGTCTGGGGCCGTCTTCTATGCCACCGAAGATGACCGATACATTCTGAAGCAGATGCCCAGACTAGAGGTTCAGTCCTTCCTGGACTTTGCCCCTCACTACTTCACCTACATCACTGGAGCCGTGCAGCAGAAGCGGCCCACTGCCCTGGCTAAGATCCTGGGTGTGTACCGGATCGGCTACAAGAACTCCCAGAACAACTCTGAGAAGAAGCTGGACCTTCTGGTCATGGAGAACCTGTTCTATGGCAGGAAGATGGCCCAGGTGTTCGACCTCAAGGGTTCTCTGAGGAACCGCAACGTCAAGACCGAGTCTGGGAAGGAGAGCTGTGAGGTGGTTCTGCTGGATGAGAATCTACTGAAGCTGGTCCATGACAACCCTCTGTACATCAGAGCCCACTGCAAGGCCATCCTCAGGGCTGCTATCCACAGTGATGCCTACTTCCTGTCTAGTCACCTGATCATAGACTACTCTCTGCTGGTTGGACGAGACGACGCCACAGACCAGCTGGTGGTGGGAATCATAGATTACATACGGACGTTCACATGGGATAAGAAGCTGGAGATGGTGGTGAAATCCACAGGGATCCTGGGAGGGCAAGGTAAGATGCCCACGGTGGTCTCTCCAGAGCTGTACCGAGCCCGTTTCTGTGAGGCTATGGACAAATACTTCCTCATGGTGCCTGACCACTGGACAGGGCTGGGGGTCAACTGCTGAACTGTTACACCAGGGAGCTAGCCTgagtcccagacctgtttgtgttGTCTAGCCAATTCCTATGTCATTTTTACAGCATGTTTGGCAAGACAGCATAAATGGATCTGGGACTCAGGCTACCAGGGAGCTGCTAGCTACAGAACACAACATGGGCATCAGTCACCAAGGTGGAGAGGAGACCGCAATGCAGAAAAAGCCTTATCCCAATAGGGAACCATAATAGCACACTGGATTGATGGATGAAGGAAAATAGAGGAAGAAGATTAatgccttttttgttgttgatgaaaTGCAAAGAATGTCCAGTTTGTACGACTCAATCATTCCATAATAATTATCATAGAATCTTGCACAGGTAGACCTATATCTAGGTAAACTGTTTTATCATAAACTAGACCAGTGACTATTCATGACTGTTCTATGGCATGACTGAAGACAGTTTTTCCTGACCTGGAAAGAAAAACTCTTGTCCCTAATGACATATTTCCCCGAGGGAAGAGATTATTTTGAAGGGCCAAGTTTTCCAACTGTTTCACAAGATCACCGAGAGAGCACAAATAATCTTACTTGGGCCTAGTTTGAGCAAACAAATTGATGTAAATGTACAGAGATGATGTAATTAAAGATTATTAACGGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2067244 lncRNA upstream 11819 37850278 ~ 37850545 (+) True G1806883
TU2067243 lncRNA upstream 13352 37848785 ~ 37849012 (+) True G1806882
TU2067242 lncRNA upstream 13724 37848027 ~ 37848640 (+) True G1806881
TU2067120 lncRNA upstream 210173 37645788 ~ 37652191 (+) True G1806785
TU2067037 lncRNA upstream 322724 37539406 ~ 37539640 (+) True G1806716
TU2067480 lncRNA downstream 5962 37908830 ~ 37912450 (+) False G1807088
TU2067481 lncRNA downstream 6128 37908996 ~ 37912450 (+) False G1807088
TU2067479 lncRNA downstream 9112 37911980 ~ 37912450 (+) True G1807088
TU2067482 lncRNA downstream 10141 37913009 ~ 37913740 (+) True G1807089
TU2067527 lncRNA downstream 67494 37970362 ~ 37971174 (+) True G1807134
XM_036959074.1 mRNA upstream 35319 37824691 ~ 37827045 (+) True LOC110502126
XM_021579668.2 mRNA upstream 39613 37821888 ~ 37822751 (+) True LOC110501829
XM_021579669.2 mRNA upstream 44667 37815130 ~ 37817697 (+) True LOC110501830
XM_036959242.1 mRNA upstream 50603 37804108 ~ 37811761 (+) False LOC110501828
XM_021579685.2 mRNA downstream 93217 37996085 ~ 38004691 (+) True coq10b
XM_036959267.1 mRNA downstream 108981 38011849 ~ 38015731 (+) False LOC110501840
XM_021579688.2 mRNA downstream 109136 38012004 ~ 38015731 (+) True LOC110501840
XM_036958497.1 mRNA downstream 109136 38012004 ~ 38029034 (+) False mob3
XM_021578579.2 mRNA downstream 119999 38022867 ~ 38029035 (+) False mob3
TU2065389 other upstream 1419287 36435000 ~ 36443077 (+) True LOC110501805
TU2065354 other upstream 1498434 36363596 ~ 36363930 (+) True G1805191
TU2064995 other upstream 1986912 35874562 ~ 35875452 (+) True G1804873
TU2064746 other upstream 2102938 35740439 ~ 35759426 (+) False LOC110501795
TU2060607 other upstream 4948182 32910793 ~ 32914182 (+) True G1800754
TU2067606 other downstream 176998 38079866 ~ 38186629 (+) True LOC110501842
TU2067723 other downstream 396259 38299127 ~ 38302575 (+) False G1807306
TU2067724 other downstream 396259 38299127 ~ 38316253 (+) False G1807306
TU2067728 other downstream 396259 38299127 ~ 38302575 (+) False G1807306
TU2067729 other downstream 396259 38299127 ~ 38316253 (+) False G1807306

Expression Profile