RNA id: TCONS_00004890


Basic Information

Item Value
RNA id TCONS_00004890
length 1620
RNA type mRNA
GC content 0.52
exon number 13
gene id XLOC_002630
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 11146321 ~ 11261565 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGGGCTTTTGGAGAGCCTCCTGTTTCCGCCTCCTCGTGTTGCTGTACTACCATGAGCAGTTCCACTCCATCCACCACAGCTAATGGCACTGACAGTAAACAGTATAAAGGAGACCGATCTCCCTGTGCCCCCTCCCGCGTCCTCCACGTCCGCAAAGTTCCCATCGAAGTGTCCGAGGCAGAGGTCGTCTCACTAGGTGTCCCATTTGGCAAAGTCACCAACCTATTGATGCTTAAAGGGAAAAATCAAGCTTTTATAGAAATGGCTTCTGAAGAAGCAGCGATGACCATGGTCAACTACTACACCACAGCCACACCCCATGTTCGCAACCAACCTGTCTACATTCAGTATTCCAACCACCGTGAGCTCAAGACTGATAATCTGCCCAATCAGGGGAGAGCCCAGGCTGCTCTGCAAGCTGTCAACGCAGTGCACACTGGGAACATGAGTCTCTCTGGGACTGCCACAGCCAGTGATGGAGGAATGATGCCTGGACAGAGTCCCGTGCTTCGTATCATCGTAGAGAATCTCTATTACCCAGTGTCTCTAGAAGTGCTGCACCAGATCTTCTCCAAATTTGGAACGGTCCTGAAGATCATCACCTTCACCAAGAACAACCAGTTTCAGGCCTTGCTACAATATGCAGATCCAATGAACGCACATCATGCCAAAGTGGCTTTGGATGGACAGAACATCTACAACGGCTGCTGTACTCTGCGTGTTGAATTCTCCAAGCTGACCAGTCTGAATGTGAAATATAACAATGACAAGAGCAGGGACTTCACTCGTCTGGACCTTCCTTCAGGAGACGGTCAGCCCACGCTCGACCCCACCATGCAGACCGCATTCGGGGCTCCAGGGATCATCTCTTCGCCGTACCCCGGGGCGGCTGGTTTCGCCCCTGCTATTGGTTTTCCTCAAGCAGGTCTGTCAATGCAGGCGATGCCTGGTGCTCTGGGACCTCTGACCATCCCTTCCTCAGCAATGACAGGACGGATGGCCATCCACGGCATGACCCCCACCGCCATCCACTCTGTGCTCCTCGTCTCCAACCTTAACCCTGACAGTATATCGCCACACGAGCTCTTCATTTTATTCGGAGTTTATGGAGATGTGCACCGAGTGAAGATTCTGTTCAACAAGAAAGAGAATGCTTTAATACAGATGGCGGACGCCACGCAAGCCCAGCTTGCGATGAGCCATTTGAATGGCCAGCGTCTGTATGGTAAGGTGATCCGTGTGACCATCTCAAAGCACCAGACAGTGCAGCTACCTAGAGAGGGTCAGGAGGATCAGGGCCTGACCAAAGACTTCAGTGGGAGCCCACTGCACCGCTTCAAAAAGCCCGGCTCTAAGAACTTCCAGAACATCTTCCCTCCCTCCGCCACCCTGCACCTCTCAAATATCCCTCCCTCCACCACTGATGATTTTCTGAAAGATCTGTTTGCCAGTTCTGGATACACAGTCAAGGCCTTCAAGTTTTTCCAGAAGGACCGTAAGATGGCACTGATCCAGCTGGGTTCTGTGGAAGAGGCCATCCAGGCTCTTATCCACCTCCACAACCACGACCTGGGAGAAAACCACCATCTGCGAGTGTCCTTCTCCAAATCCACCATCTAG

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0006417 regulation of translation biological_process
GO:0048025 negative regulation of mRNA splicing, via spliceosome biological_process
GO:0043484 regulation of RNA splicing biological_process
GO:0005634 nucleus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG:

id description
ko03041 Spliceosome

ZFIN:

id description
ZDB-GENE-091116-1 Predicted to enable mRNA binding activity. Predicted to be involved in regulation of RNA splicing. Predicted to act upstream of or within mRNA processing. Predicted to be active in nucleus. Orthologous to human PTBP3 (polypyrimidine tract binding protein 3).

Ensembl:

ensembl_id ENSDART00000040308

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006010 lncRNA downstream 358840 10784334 ~ 10787649 (-) True XLOC_002626
TCONS_00006009 lncRNA downstream 432262 10712178 ~ 10714227 (-) True XLOC_002625
TCONS_00004883 lncRNA downstream 432268 10712178 ~ 10714221 (-) False XLOC_002625
TCONS_00004881 lncRNA downstream 567657 10564261 ~ 10578832 (-) False XLOC_002624
TCONS_00006008 lncRNA downstream 815358 10327167 ~ 10331131 (-) False XLOC_002623
TCONS_00004895 lncRNA upstream 128805 11331969 ~ 11333113 (-) False XLOC_002632
TCONS_00006011 lncRNA upstream 692209 11895373 ~ 11898575 (-) True XLOC_002638
TCONS_00006012 lncRNA upstream 2095675 13298839 ~ 13301973 (-) True XLOC_002642
TCONS_00006013 lncRNA upstream 3827842 15031006 ~ 15042748 (-) True XLOC_002656
TCONS_00006014 lncRNA upstream 3829808 15032972 ~ 15034960 (-) True XLOC_002657
TCONS_00004888 mRNA downstream 134489 11000894 ~ 11012000 (-) True XLOC_002629
TCONS_00004887 mRNA downstream 176893 10880665 ~ 10969596 (-) True XLOC_002628
TCONS_00004886 mRNA downstream 177045 10879537 ~ 10969444 (-) False XLOC_002628
TCONS_00004885 mRNA downstream 282158 10860759 ~ 10864331 (-) True XLOC_002627
TCONS_00004884 mRNA downstream 282553 10860759 ~ 10863936 (-) False XLOC_002627
TCONS_00004892 mRNA upstream 116807 11319971 ~ 11323134 (-) True XLOC_002631
TCONS_00004893 mRNA upstream 121351 11324515 ~ 11353469 (-) False XLOC_002632
TCONS_00004894 mRNA upstream 124191 11327355 ~ 11353101 (-) False XLOC_002632
TCONS_00004896 mRNA upstream 144337 11347501 ~ 11351533 (-) True XLOC_002632
TCONS_00004897 mRNA upstream 168797 11371961 ~ 11376491 (-) False XLOC_002633
TCONS_00004879 other downstream 814062 10319308 ~ 10332427 (-) False XLOC_002623
TCONS_00004880 other downstream 816935 10329464 ~ 10329554 (-) True XLOC_002623
TCONS_00004869 other downstream 1608163 9534782 ~ 9538326 (-) False XLOC_002618
TCONS_00004859 other downstream 2004810 9141565 ~ 9141679 (-) True XLOC_002611
TCONS_00004856 other downstream 2056853 9037358 ~ 9089636 (-) False XLOC_002608
TCONS_00004903 other upstream 558216 11761380 ~ 11764439 (-) True XLOC_002636
TCONS_00004913 other upstream 2101901 13305065 ~ 13305183 (-) True XLOC_002643
TCONS_00004918 other upstream 2403863 13607027 ~ 13607143 (-) True XLOC_002646
TCONS_00004919 other upstream 2408969 13612133 ~ 13612248 (-) True XLOC_002647
TCONS_00004920 other upstream 2728405 13931569 ~ 13931696 (-) True XLOC_002648

Expression Profile

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