RNA id: XM_021579716.2


Basic Information

Item Value
RNA id XM_021579716.2
length 1390
RNA type mRNA
GC content 0.46
exon number 10
gene id acmsd
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 40171735 ~ 40185460 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTAGGGGGCAGGGCAGTAGGGCGGAGAATAACCTTGCTCAATGATCATGATAGACACCGTTTACTACCTGTCTCACATTAGGCGAATTGTATGAAAAACACTTGTCGTAGTAGATTGATCAGGATGAAGATTGATATTCATAATCACATTTTACCCAAGGAATGGCCCAATCTGAAAGAGAGATATGGATATGATGGATTTATCCAGCTTCACCATCACTGCAAGGGGGAAGCAAAAATGATGAAAGACGGGAAGTTGTTCCGCGTGATCCAGGAGAACTGTTGGGATGCAGCCGCAAGGATTCGGGACATGGATGCACatgGGGTGACGGTCCAAGCCTTGTCCACAGTGCCTGTCATGTTTAACTACTGGGCCAAACCTCATGACACCCTGGACCTGTGTGGGATCCTGAATGACGACCTGGCTAAGACAGTGGCGCTCCACCCTCGACGCTTCGTGGGGCTGGGTACCCTGCCCATGCAGGCTCCTGACCTGGCTGTGCTGGAGATGAAGCGTTGTGTTAGGCAGCTGGGCTTCCCTGGTGTACAGATCGGCTCACACATTAACACCTGGGATCTTAACGCCCCCGAACTCTACCCAATCTATGCTGCTGCTGAGGAACTGAACTGTTCCTTGTTTGTACACCCATGGGACATGCAGATCGATGGGAGGATGGCCAAGTACTGGCTCCCCTGGTTAGTGGGTATGCCTTCCGAGACTACCATGGCCATTTGCTCAATGATCTTCGGAGGTGTCTTTGAGAGATTTCCCAAGTTGAAGGTCTGCTTTGCTCATGGAGGGGGTTCTTTCCCGTTCACTATTGGCCGAATTGAACATGGGTTCCAGGTCCGACCTGACCTCTGTGCTGTGGATAACAAAGTCAACCCACGGAAATACCTGGGCTCCTTCTACACTGACTCCTTAGTGCATGACCCCATCGCCCTCAAGCTACTTATTGATGTGATTGGAAAGGATAAGGTGATGTTAGGAACAGACTATCCATTCCCACTGGGTGAGCTGCAGCCAGGAACATTAATAGAGTCCATAAAAGAGTTTGATGGTGGTTTAAAGGACAAACTGCTTGCAGGCAATGCACTGGACTTTTTGGGGATTGAAAGAGAACGATTTCAGTGATTTACAGCATGAAGATATTGTCAAAACAAAAATGGAAAACAATGTTTGACTTTCAAATTACTCTTGAGTATTGGCAGGTCCATAAAACAAATACAACCTATTGCgtgaccaaaatgtaaatatttAATTATGGAGATATTTTTCATCTATTTAGCTAATTTATCGTGATTTTTGTTTACAGTGTTGGAAGTAATCTGTGGTCAACCCTCTTTTTGCTGTTTATGACTAAATAAAATGGAATGTTCATTTCAAACA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0001760 aminocarboxymuconate-semialdehyde decarboxylase activity molecular_function

KEGG:

id description
K03392 ACMSD; aminocarboxymuconate-semialdehyde decarboxylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2069895 lncRNA upstream 87768 40080106 ~ 40083967 (+) True G1809159
TU2069911 lncRNA upstream 133139 40038236 ~ 40038596 (+) True G1809175
TU2069910 lncRNA upstream 134007 40037423 ~ 40037728 (+) True G1809174
TU2069909 lncRNA upstream 134431 40037028 ~ 40037304 (+) True G1809173
TU2069905 lncRNA upstream 140792 40030740 ~ 40030943 (+) True G1809169
TU2070206 lncRNA downstream 39532 40224992 ~ 40226173 (+) True LOC110502148
TU2070209 lncRNA downstream 41018 40226478 ~ 40226683 (+) True G1809450
TU2070230 lncRNA downstream 63779 40249239 ~ 40249526 (+) True G1809469
TU2070260 lncRNA downstream 81536 40266996 ~ 40267411 (+) True G1809499
TU2070265 lncRNA downstream 84730 40270190 ~ 40270565 (+) True G1809504
LOC118943662 mRNA upstream 258695 39912913 ~ 39913040 (+) True LOC118943662
XM_021579712.2 mRNA upstream 258873 39890643 ~ 39912862 (+) False si:ch73-116o1.2
XM_036959291.1 mRNA upstream 605111 39478258 ~ 39566624 (+) False LOC110501860
XR_005038836.1 mRNA downstream 5123 40190583 ~ 40197155 (+) False LOC110501869
XM_021579718.2 mRNA downstream 5123 40190583 ~ 40198092 (+) False LOC110501869
XM_021579717.2 mRNA downstream 5124 40190584 ~ 40200438 (+) True LOC110501869
LOC110502148 mRNA downstream 30560 40216020 ~ 40263466 (+) False LOC110502148
XM_036959308.1 mRNA downstream 172487 40357947 ~ 40418247 (+) False LOC110501870
TU2069833 other upstream 246340 39924414 ~ 39925395 (+) True G1809107
TU2069485 other upstream 476867 39693913 ~ 39694868 (+) True G1808787
TU2068780 other upstream 1020402 39149080 ~ 39151333 (+) True G1808209
TU2068019 other upstream 1308599 38862740 ~ 38863136 (+) True G1807566
TU2067810 other upstream 1760572 38406137 ~ 38411163 (+) True G1807376
TU2071418 other downstream 1004229 41189689 ~ 41192492 (+) True G1810553
TU2071621 other downstream 1279018 41464478 ~ 41466349 (+) True G1810740
TU2072842 other downstream 2071095 42256555 ~ 42308216 (+) False LOC110501889
TU2072841 other downstream 2143813 42329273 ~ 42340392 (+) False LOC110501889
TU2072843 other downstream 2186846 42372306 ~ 42389287 (+) True LOC110501889

Expression Profile