RNA id: XM_036959339.1


Basic Information

Item Value
RNA id XM_036959339.1
length 5544
RNA type mRNA
GC content 0.50
exon number 9
gene id LOC110501885
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 41286486 ~ 41363126 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aggagagacaggagagcgTGCGGATCACCTGGAGCCAGCAGTAGACCTGAAACATGTCTATTTATTTTTATGATCATATCAAACACATATCAAATATGGCTTTTTTCATGGAAGAGCCGcacagagaaaggaagagagatagagagaaagagactgtatGGAGTAGATACTAGCGCCTCATGGCATATGCAAGGGCTCTGTCTGATGTGTCTTTTGAACTGCGGGGCTGTTTAAAATGGACGACGAGGAAGGAAGCCTccctcaggagaggagagggcaggtgtGGTCTCTGCAGAGCCTGAGGACGCGCTGTGGGACAGGCGATGATGTGGACAGGGTTATCTTTTGCGGAATTAATATGATCTGTGACAGTGCTGACATATGAGAATGTGGTGGAGATGAGCTCTGAGACAGGCGAGGATGACAAGAAGCTGCTCTCAGAGGAGAATGGCCTGACCAATGGGGAGGAGGGTGGTATCCCTGCCGGAGGCAGCGTGCCTAACCTGGAGGCATCACCCAGGGTGGGCCACGCCCTGCTGTCCTACAGGGGTGGAACAGAGAGATCAGAGGGCGGGGACGGGCGGCAGAGCCACCACCACGCCTGCCGCCTGGGAGACAACCAACACAGACACCTCAATGGGACTGATGAAAGGAAGGATGAATATGATCCCTTGGGGCCAGAGGGGTCTCTTCACTCTGTAGGAAGTGGTCCAGTTAATGGAGTGGATGGGGTGTCAGAGCTTGACGACTACTTCACTAAGTGTAGTAAACTGGAGGAGAGTGACGGCCTCTCGGCCAGCATCGCTGAATACCTCCAGCGTGGCGACACCGCCATCATTTACCCAGAAGCCCCAGAGGAAGTGACACGACTCGGAACTCCCGAAACCATTGTGCAAGACGAAAACGAAAACGAACTGTCACCTGGGACTCCAGATGCTTTCACCCAACTGTTGACCTGTCCTTACTGCGACCGGGGTTACAAGCGGCTGACATCGCTCAAGGAGCACATCAAGTACCGCCATGAGAAGAATGAGGAGAGCATACCCTGCCCACTGTGCAGCGAGACCTTCTCACACCGAACACTGCTGGAGAGACATATGGCCATGCACAAGCCAGGGATCGATCAGCCCCAGCTGCTGAGTGAAGGGGCCGGCAATCGCAAGTTCAAATGCACTGAGTGTGGAAAAGCCTTCAAATACAAGCATCACTTGAAGGAGCATCTTCGCATTCACAGCGGCGAGAAACCATACGAGTGCTCCAACTGCAAGAAGCGCTTCTCCCACTCCGGCTCCTACAGTTCGCACATCAGCAGCAAGAAGTGTGTTGGTCTGTTCTCCGTCAATGGACGAGTAAGTAATGGAGGAGGCAACGCCAAGGCTGGCTCCTCCCCTAACTCCACCGCCTCCTCCCCGGGAAGCCCCGCCCTGGCTCTGCTCCGCCACAAGCTGGAGAACGGACGCCCCATGGGGCTCCAAGACCAGCAGGGCCACCTGGACATCAAGGCAGAGCCAATGGACTTAAACGACTACCGGCTACTGATGGCCTCCCAGTATGGCGTCGGAGGACCAGGGGGCTACATGAATGGAGCCTGCCGAGGAGGCAGCCCCCTGGGGGTCCACAGCTCATCCCAGAGCCCCCTGCAGCACCTGGGTGGAATGGGGTTGGACCTGCCCCTGCTGGGATACGGGTCCCTGGGGAACAACCTGAGCGAGGTGCAGAAGGTCCTCCAGATTGTGGACAACACGGTGTGTCGGCAGAAGATGGATGGGAACCCGGAGGAGATCTCCAAGCTCAGGGCCTATATGAAGGAGCTGGGGGCTCAGATGGAGGAGCAGAAGCTGGCCTTGTCCTCTCCGCGTGCCAGCTTCCAGGCGGTGGGCCATGGCAGCCCCACCAAGAGCATCATCGACTACACCCTGGAGAAGGTGAACGAGGCCAAGAGCCTGATCGATGACTCCAAGAGGCAGATCAACATGGACATAAAGAAGGAGAGGCTCAACCACTCGACGGATCGTGAGGACAAGTCGCACCACGGAAGCCACCTGGTTCCATTCCTGCCGTTCTCCTGCCAGTTCTGCAAGGAGACCTTCCCAGGGCCCATCCCACTGCACCAGCATGAGCGCTACCTGTGTAAGAAGAACGAGGAGATCAACCACCTTCAGCCCAGCGAGGACGTGTCTCTCAGCCACAGGGGAGTGTTCCCCTCAGACCAGCAGGCCTCCCTGCTGTCCTCTCTTTCAGAGAGGGGCGCCACCAGCCCCTCCAACCCCTTCAAGGACCACATGTCAGTGCTCAAGGCCTACTTCGCCATGAACACAGATCCCAACTCAGAGGAGTTGCTGAAGATCTCCATCGCAGTCGGCCTTCCGCAGGAGTTCGTCAAGGAATGGTTCTCCCAGTGGAAGaatcagcagcaacaacaacaacacaacaagggCAATGCCAACCACAGGAAGCAGTCACCGCCGCCAGAGCGGAGCAGTGCAGAGGAGCGCAGGCACCACAGGCTAACCAGGTCACCAATGTCCACGGCGCAACACGTGGACCGTATCATGGCACTCGCTGATTTACACGGTGGCAACACCAACGGTGACCGTGACGCTCTCCACAGACACTCAGAGGCCAACCAGTTTACAGCAAACAGGCAGACGGGTGACAAACCACTAGACCCCTTGAACCAACTTAGAAGCAGAACTCCATCTCCTctaaatctctcctccacttcttCTAAAAACTCCCAGAGCAGCTCGTACACTCCAAACAGCCTGGCCTCTGAAGGGGACAGCCATGGGGGGGACGCACCGTTGGACCTTTCTCTGCCAAAACACATGATGAGCAACAGCATCTCACTGGGAGAAAAGAGGTCCGAACCAAACGGCTACGTCTCAGACTGCAACGGTGACCACCACCATTCCAGCCGGGAGCAGGGTACTGAGCCCATGGACTTGGCCCACATCAAGAAGGAATTCCTGGGCtcggagagagacaacagaggcAACCGTGGACACCAGATGGAGAAGAGTGTCAGCCCCATCTTTGGCATCAACCCCTTTGGTGGTGGTCACATGTACACATCTCTGCCCCCACATGGAGCATTCCCCCCGCCTAGCTTCATGCAGGCCCAGGCCAGCATCCCAGGCCTGAGGCCATACCCAGGGCTGGATCCAATGAGCTTCCTGCCCCACATGGCCTACACTTATGCAACTGGGGCGGCTACATTCGCTGAAATACAACAGAGGTCGAGGAAGTACCAACGGAAACCAGGTTTCCAGGGGGAGCTATTGGACGGCACTGTGGACTATCTGTCAGGCCTGGAGGACCTGACAGACGAATCCCTCCTCTCCCGGAAGAAGATTAAGAAGACAGAAAGTGGTATGTACGCGTGTGACTTGTGCGACAAAACATTCCAGAAGACCAGTTCCCTCCTAAGACACAAATATGAACACACAGGAAAGCGACCACACCAGTGCACGATCTGTAAGAAGGCCTTCAAACATAAGCACCACCTCATCGAGCACTCTCGCCTGCACTCTGGAGAAAAGCCATACCAATGTGACAAGTGTGGCAAGCGCTTCTCTCACTCAGGCTCCTACTCCCAGCACATGAACCACCGCTACTCCTACTGCAAGAGGGAGGCCGAAGAGAGGGAGGCAGCTGAGAGGGAGGCGGAGGAGAGGGAAGCCTGGGACAAAGGCCAGGGCCCCATGGAGCCCACAGAGCTACTGATGAGGAGGGCCTACCTACAGGGTCTGGGGCCGTTGGGCTACTCAGACACCGAGGACCAGCTGGACGACGGGGGCGACACCATCCTGAGGGATGGCACGGAAGGAGGAATGAGGGGAGGACGAGGACAGACGGAAGTGGACGAGACGTATGAGGAGGTGACAGACAGACGAGAGGCGGGAAGTTTCAGGGAAGGAGAGGACGAGGGTGACGGAAGGATGGACACAGCGAGGGATGACGAGGGGAACGATGCAATGCATTCGATGGATGACAGTTCAACAGAAGGGAAAAGAGACACCAAGTCAGACCATTAGGAAGCAGATTAAATCAATTCTGCAGTCagtcccccaaaaaatattgCAGAAAATATTTGTCATGATGGTTTGTTTCATTTCCTTTTTCCATTCTTCCAGCAAACATGAAACTTGCTTTGTTTTCAGAAGGGCACTGCAGGGGCTAAGTCAAGCAACTTGTAGCTTCTCAGAAGCTCATAATGATGGACTCATGGAATGTGGTGACTGACTGCCAACATCAGAGTTGAGATGACAAGCTGGGTGGGATTATTTAAGAATCAACATTATGATGTAATAATGATTATCATTATAATAAACAAATTAAATGAAGCTGTCTTTAATGCACAGTGTAAAATAAGGCCTAAAAGCTGTGTGGTGCTATAATGTTGTTAACCCTTGTGTTTTATTGTGTTCATACCCCAAACCAGGAAATTGCACTCTGCCCCTTTaatcactacaaaaacaataaaaaaactatttaaaaaacCCTATGTATATTTATACCGTGCTTGAAGACTTGGTAGCAGTCCGTCAGTGTTGTACTTTGTCTACTACTTACTGTGATGTCCTTGGTTCTACCCTCCCTTTTTGCTCGGCAAACTAACCGCACCATTTTTTTGTCTTTATGTGAAGGAAACTTTAAACCTGTGTGATTTTGATGAGTCTTAAAATGGACTGGAATGAAATGACAGAATGAAATAGAGAATTGTGAAATACGAAGGGCTCCATATGACAGACACAAGAGACTTAGTATGTTTTATTTTCTCAAGAGAAAGCCTTATATGCAAACCTTTTCACCTGTGCGTTTCTGCAAGTGCCATCCCTGTACAGTGTAAAAATCAAGAGTTTACTCGTATTATCTTTGCTCTGGCTTCAGTATTAAATCAATAtttcatctagtttttcaaagtaCCTATGTCAGTATTAGCATCGATAGAGACAGCAGTTCGTTAGTTTACATGTTTGTGCAATTTTATGTACTTTTCATTTACCtttttttcagtattacttttGTTTTTGTAGATTTCTTTTCCCAAGCATAAATTACATTTCAATCAAATTTTAAGATTGCCATTTTATTTATGTGACTCATTTTATATTTCctaattgtatttatttcataCTGTAGTGTACAGTATGATAGTTCCTCAACAAATATATTTTAGTAAAGGATTGTGTCATTGGCTATTGGAGAAAATCGTCAATAGAAAGCACTCTATGGTATTTGGAAAAACAGTCATTGTTTTAAATTGTCAATTTAGTTCTTATCATTTTATTTCCTTTAAACTACTGGAAATTTGCAATTTGGGGAACTTTTGATACAATATTGTGAAAACACTGTATTTTTTGACAATAAAAACTCCACTTTAGTCATCCAGGTACAGAGATTAAGATAGAGGGGGTGTTGATGGAAAATTCCTAAAATGTCTTAAGTAGGCTATTATTGAATTTTTTATTTCTCTTGGAAATGACCTCGAATAAATGTAGCCAAAATAAATTTGAATAAAGCTGTGTTGTTCTTCTTGTA

Function

GO: NA

KEGG:

id description
K23560 ZEB2; zinc finger homeobox protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2071494 lncRNA upstream 64782 41277281 ~ 41277490 (+) True G1810621
TU2071455 lncRNA upstream 111950 41230097 ~ 41230322 (+) True G1810584
TU2071452 lncRNA upstream 117564 41224414 ~ 41224708 (+) True G1810581
TU2071448 lncRNA upstream 122300 41218884 ~ 41219972 (+) True G1810577
TU2071440 lncRNA upstream 139069 41202936 ~ 41203203 (+) True G1810569
TU2071574 lncRNA downstream 36234 41399360 ~ 41399714 (+) True G1810698
TU2071577 lncRNA downstream 39491 41402617 ~ 41402877 (+) True G1810701
TU2071578 lncRNA downstream 39763 41402889 ~ 41403092 (+) True G1810702
TU2071581 lncRNA downstream 42249 41405375 ~ 41405644 (+) True G1810705
TU2071582 lncRNA downstream 44604 41407730 ~ 41407952 (+) True G1810706
XM_036959325.1 mRNA upstream 584046 40745882 ~ 40758226 (+) False LOC110501877
XM_021579727.2 mRNA upstream 584046 40745887 ~ 40758226 (+) False LOC110501877
XM_021579728.2 mRNA upstream 584046 40745898 ~ 40758226 (+) True LOC110501877
XM_021579725.2 mRNA upstream 783523 40550073 ~ 40558749 (+) True LOC110501874
XM_036959324.1 mRNA upstream 841614 40494868 ~ 40500658 (+) True nmi
LOC110502150 mRNA downstream 163856 41526982 ~ 41528136 (+) True LOC110502150
XM_021579999.2 mRNA downstream 578071 41941197 ~ 41943225 (+) False LOC110502132
XM_021580000.2 mRNA downstream 578080 41941206 ~ 41943225 (+) True LOC110502132
XM_021579744.2 mRNA downstream 893291 42256417 ~ 42389468 (+) False LOC110501889
XM_021579751.2 mRNA downstream 1148847 42511973 ~ 42550970 (+) False LOC110501894
TU2071418 other upstream 149780 41189689 ~ 41192492 (+) True G1810553
TU2069833 other upstream 1416877 39924414 ~ 39925395 (+) True G1809107
TU2069485 other upstream 1647404 39693913 ~ 39694868 (+) True G1808787
TU2068780 other upstream 2190939 39149080 ~ 39151333 (+) True G1808209
TU2068019 other upstream 2479136 38862740 ~ 38863136 (+) True G1807566
TU2071621 other downstream 101352 41464478 ~ 41466349 (+) True G1810740
TU2072842 other downstream 893429 42256555 ~ 42308216 (+) False LOC110501889
TU2072841 other downstream 966147 42329273 ~ 42340392 (+) False LOC110501889
TU2072843 other downstream 1009180 42372306 ~ 42389287 (+) True LOC110501889
TU2073435 other downstream 1360546 42723672 ~ 42724114 (+) True G1812428

Expression Profile