RNA id: XM_021579999.2


Basic Information

Item Value
RNA id XM_021579999.2
length 1374
RNA type mRNA
GC content 0.40
exon number 4
gene id LOC110502132
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 41941197 ~ 41943225 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAGACTCTTTCACCAGTCACCACAAACAAAGAGTTGCCATTTCCATAACCTTTAAAGTCATAGATTTCAGATAAAGATTGAGTTGAAGATGACTACCAAGATTTGGATCAATCTCATCATCTTATGTTTACTAAAAGCAGCCTCATCCCTCTCCGGACCTTCAGAGGTGAAGAGTGTAGTTGGTGAAACAGTCCACGTCTCCTGCCAGTATCACAAGTTCAACAgggacaaggtcaaaatctggtGCAGGGGTTATCACTGGTATTTCTGCAAAGTTATCATTCGATCTGATCAACCTAAACATCTGACCAGTGATGTTCAGATATTGGATGATAAAAACCTTGGGTTATTCACAGTCAGTATGAAAGGAGCAACAGCTGAGGACAGTGGCTGGTACTGGTGTGCAATTGAAAGAGCCAGCAGAACTTTGACGTTTCGTCTTCGGCTGACTGTCTCCGAGTGGCTTGTATCTCGGCTCAAAACAGAAACCACAAAACAGTACAACAAGACCTCAACTTCCCCAACAACGTTGACAACACCACGGTCCACACCTTGTATGACTCAAACAACAGGTCTCATATCTGCTACAAGCAAATCAACAAGTGTGACAGTGTCCTTGGCTCAAGATGATCCGGTGTGGAAAGTATGGAGAGTACTGCGCTGGatgctcttcctcttcctgtgtctgtTCCTTGTTCTCTTCAGTATACGATGCCATTGCTGATATTTGTACCATTCCTGCTGATAAATCGCTTGTCTCAGTGTGTGCTACATTTTCCCCTAATCAAAATGTACCAAATCCAAATCGTTGAGAATATTGTTTGTTTTAATTTATGAAGCTAAAACATTCAAACATGCACATATATATTAATAATAAGCTAATGCATTGAGGTCATAACATGTTCCGAGAGATATGAATGTATAGAGAAACAATACTaaagatgttggatcttaatttgaaccagtttgcAGGAAAATAATACTGCATgcaacagaaaatgtgaattattatgtggatttgtcacgttctgaccttagttccttttttatgtctttattttagttggtcagggcgtgagttggggtgggcattctatgttgtttttctatgttttgttctgttgttatatttctatgtgtttggcttagtatggttctcaatcagaggcaggtgtcagtcgttgtctctgattgggagccatatttaggtagcctgttttctattgtgttttgtgggtggttgtatccTGTGTTAGTGTTTTCACCAGACGGGACTGTTTCAGTTGTTTGTTtgtacttttgttattttgttcagtgttcagttgatttattaaatatatcattatggacacttaccaccctGCACATTGGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2072258 lncRNA upstream 76623 41863711 ~ 41864574 (+) False G1811331
TU2072261 lncRNA upstream 76623 41863711 ~ 41864574 (+) False G1811331
TU2072262 lncRNA upstream 76623 41863711 ~ 41864574 (+) True G1811331
TU2072228 lncRNA upstream 121794 41819199 ~ 41819403 (+) True G1811303
TU2072226 lncRNA upstream 123851 41817037 ~ 41817346 (+) True G1811301
TU2072453 lncRNA downstream 24081 41967306 ~ 41970274 (+) True G1811516
TU2072472 lncRNA downstream 46803 41990028 ~ 41990631 (+) True G1811532
TU2072639 lncRNA downstream 177229 42120454 ~ 42120875 (+) True G1811696
TU2072652 lncRNA downstream 188845 42132070 ~ 42132269 (+) True G1811709
TU2072660 lncRNA downstream 193360 42136585 ~ 42136947 (+) True G1811717
LOC110502150 mRNA upstream 413061 41526982 ~ 41528136 (+) True LOC110502150
XM_036959336.1 mRNA upstream 578071 41286486 ~ 41363126 (+) False LOC110501885
XM_036959337.1 mRNA upstream 578071 41286486 ~ 41363126 (+) False LOC110501885
XM_036959338.1 mRNA upstream 578071 41286486 ~ 41363126 (+) False LOC110501885
XM_036959339.1 mRNA upstream 578071 41342272 ~ 41363126 (+) True LOC110501885
XM_021579744.2 mRNA downstream 313192 42256417 ~ 42389468 (+) False LOC110501889
XM_021579751.2 mRNA downstream 568748 42511973 ~ 42550970 (+) False LOC110501894
XM_021579752.2 mRNA downstream 568749 42511974 ~ 42550970 (+) True LOC110501894
XM_036959347.1 mRNA downstream 671953 42615178 ~ 42685108 (+) False LOC110502156
XM_036959345.1 mRNA downstream 671956 42615181 ~ 42685108 (+) False LOC110502156
TU2071621 other upstream 474848 41464478 ~ 41466349 (+) True G1810740
TU2071418 other upstream 748705 41189689 ~ 41192492 (+) True G1810553
TU2069833 other upstream 2015802 39924414 ~ 39925395 (+) True G1809107
TU2069485 other upstream 2246329 39693913 ~ 39694868 (+) True G1808787
TU2068780 other upstream 2789864 39149080 ~ 39151333 (+) True G1808209
TU2072842 other downstream 313330 42256555 ~ 42308216 (+) False LOC110501889
TU2072841 other downstream 386048 42329273 ~ 42340392 (+) False LOC110501889
TU2072843 other downstream 429081 42372306 ~ 42389287 (+) True LOC110501889
TU2073435 other downstream 780447 42723672 ~ 42724114 (+) True G1812428
TU2073416 other downstream 786376 42729601 ~ 42735867 (+) True LOC110502157

Expression Profile