RNA id: XM_036959349.1


Basic Information

Item Value
RNA id XM_036959349.1
length 5515
RNA type mRNA
GC content 0.51
exon number 12
gene id LOC110502157
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 42688215 ~ 42735867 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGGCCGCTCGGGAACTCGCAAACATTGCCGCGCTCCCATGTGTTTCCAGGAGATTTTCGGTTCCCCGTTGACCTCTGGTGCGCGTGCCCGCCCAAATCTGGACTCAAGCAGGGAGATGCGCGTGGCCGAATTTGACGAGATAATTGGGAAAAGAGGACGTTAAGCATAGGACTAATACAGTAGATACAATAATTGTCCAAACGTTTGTCACATTATTCTCAGGGTAAAATATGAAAAAATAGCCTGGGAAGAATTTGAAAGCGCACCGGCACTACACATCTAGACCACCATTCCGCTAGACGATGAGATTAATTACTTGGGTTTTATATTGGGTTGAAGCATTGTTTTGCAGACTAATTTAGCATCTCGATGGACTGTAAACAGTATTGCAAATTGTATGCATTTCAACGGATGATATTCTGAGTACGCAACAATGCCATTcatttatataaattatatttctTAACCCATCTCTGGATCTGCGCACAGCTGAAGGATAAAATAAACTAAAAGTGCGACtatttgttgtttttgtcgtTGTCCTCTCGCTAATGTGTTTACGTGTTTCATCTGATGGATTAGTTTAACTGTCGACTGTAGCCTATGTAGCTCGAAGGGAACTGTAGCCTTCACCAATATTTTTGGGGAGATTCATCGGACTTGCAAAAAAGCCATATCATGTATGCTGGACGTAAAAGGAGAAAACCAGTCCAGAGAGCCGTAAAACCGCCACAATCAGAAGGGGCCAAGTCGAACCCCTCGAAGCGCCACCGGGACCGTCTGAATGGAGAGCTGGAGAGGCTGGCCAGCCTCCTCCCCTTCCCTGAGGAGGTCACCACCAGCCTGGACAAACTCTCCATCCTCCGCCTTAGTGTCAGCTACCTCCGGGCCAAGAACTTCTTCACCGtTGCCCTGAAGAACTGTACTTGCAGCGGTGGCAGCGCTGACAACAGCAAAGCCACAGGATTGGAGGACAGTTGGCTGCCTGAAGGAGAACTGTTGCTGCAGGCTCTGAACGGCTTCGTCCTGGTGGTCACTAATGACGGGACCATTTTCTACTCCTCTCACACCATTCAGGATTACCTGGGCTTCCACCAGacTGATATTATGCATCAGAGTGTGTATGAGTTGGTCCACACTGAGGACCAGCAGGAGCTGAGGAGGAACCTCCACTGGGCCCTCAGCCCACCTACCATCATGGACACACTGGGAAAGTCCTCCTCAGATGTGGAGCCGGAGAGCGGCACCACTGTGACCTATAACCCTGAGCAGCTCCCACCAGAGAACTCCTCCTTCCTGGAGAGGAACTTCGTATGTCGCTTCCGCTGCCTCCTGGACAACTCCTCTGGCTTCCTGGCCCTGAGTCTGCAGGGCAGGCTGAAGTTCCTGCGTGGTCAGAACCAGCGGCAGGAAAACAGGGTCAAGGCGCCGCCCCAGCTGGCCCTGTTTGCCATCGCTACGCCTCTCCAGCCCCCCTCCATCCTGGAGATCAGGACCAAGAACATGACCTTCAGAACCAAACACAAGCTGGACTTCACCCCCATGGCCTGCGACGCAAAGGGGAAAATTGTGCTTGGGTATACTGAAGCTGAACTTCGGGTGCGAGGCTCTGGGTATCAGTTTATCCATGCGGCGGATATGTTGTACTGCGCTGAGAACCATGTCCGAAtgatgaagacaggGGAGAGCGGTCTGACCGTGTTCAGGCTCCTCACCAAGGACAACCTCTGGAAGTGGGTCCAGGCCAACGCCAGGCTGGTGTACAAGAATGGAAAACCAGACTACATCATCGCCACACAGAGGCCTCTGATggaggaggaaggaggcgAACACCTACGTAAACGTTCCATGCACCTCCCCTTTACCTTCGCCACGGGAGAGGCCCTGCTCTACCAGTCCAGCCATCCAATTGGACGCTTCAACCACAGCACCCAGGGCTCCGAGAAGAACGGCAACAAGTCCAAGAAGGGCCGGATTGACAGGGTGTCCAGGGATGGCCTGGACCCGGGCTCCCTCTTGGGGGCGCTGATGAGTCAGGCTGAGTCTGTATATGTCTGCCAGCCGGCCTTGGAGCCCCAGCTGTCCTTCCACAGCAGTCTGTTCGGAGACCGGGTCGGTTTCTCTGACTCCGACCCCACCGCCCTGCTCCAGGGCTGGGATGAGTCGTCCAACAGAGTGGTGGGTACGGGCCTTCCAGAACCGGCGTCGAGCTTCGACCCTCTGCTGGTGACCCTGGACTCCCTGTCCCTGGGAGGTCCGGGGGGTGGGGTGGACCGGAATGGGGATGGAGGAAATGGGGAGAACTGTTCCAACGGGGAACTATTTGGGGCTTTGGAGGGCCTGGGACTGAGCGCTGAGGACCTGGAGCTGCTGCTGTTGGACGAGAGGATGATCCGGGTGGAGATGGACCCCGAGCGGGTTCCCACCCTGGATGACCTGCTGACCAACGATGAAATCCTGTCCTACATCCACGACTCCCTGGAGGCAAATACAGATGGGGCAGAGGACGGGGACCAGGTACCCTCCACGATCCCAGGAACAAATGCCCCAGAAACcaccacaaaaacaacaaaggCTCCTGTTGAAAGTAATCCCACTTCTGCCACCAATGTGTACCCTCAGTACGTTCCCCATAATGCCCCCATAGTTCAGCAGATGCAGAAGCACCTCAACATGCAGCCAGGGAGGGCGGTCCAAGACTGGGTCCAGCATAGCAACCACTTGCCCCATCCAGTGGTGAATGGACTGCAGGGGCAGAGTCAGCCAATACACAACGGAGAATGGACATCCCTACACATTCTAGCCAATACAGGGGTACCGGTTGACGACTGTCacaccccccagactctgttaaaTGGAAAGGCGTCAGAGCCGGATGGGGACCATCACTGGCGGCAAGCCCACCAACGTCAACACTACCTCCAGCAGCAGCAGGCCCTGGTCCAGATACCGCTCCCTCACAGCCATGCCAAACATCCAGGCGCTAATCTCAACGGAGTGTGTGGcattccaaacacacacacagagcatctCCCAGCTGGCAAACAGCAATGGCAGGACTATAGCTACTGCCCCCCTGGGGAAACCACCCCGAACAGCAACCCCCCTGGGCAAACCACCCTGAACAGCAATCCCCCTGGGCAAACCACCCTGAACAGCAACCCCTCTGGGAAAACCACCCTGAACAGCAACCCCCCTGGGAAAACCACCCTGAACAGCAACCCCCCTGGGCAAACCACCCTGAACAGCAACCCCCCTGGGCAAACCACCCTGAACAGCAACCCCTCTGGGCAAACCACCCTGAACAGCAACCCCTCTGGGAAAACCACCCTGAACAGCAACCCCCCTGGGCAAACCACCCTGAACAGCAACCCCTCTAGGGAAACCACCCTGGTCAGCAACCCCTCTGGGCAAACCACCCTGAATAGCAACCCCCCTGGGCAAACCACCCTGAACAGCAACCCCCCTGGGGAAACCACCCTGAACAGCAACCCCCCTGGGGAAACCACCCTGAACAGCAACCCCTCTGGGAAAACCACCCTGAACAGCAACCCCTCTGGGAAAACCACCCTGAACAGCAACCCCTCTGGGCAAACCACCCTGAACAGCAACCCCCCTGGGGAAACCACCCTGAACAGCAACCCCTCTGGGCAAACCACCCTGAACAGCAACCCCTCTGGGGAAACCATCCTGAACAGCAACCCCTGCCTTAACGATGGCCAGGTACCTCTCCTCACACACACCACCGTAGCCGCTTGTATGAATTACACTATGGCTGATATTCCCGGCATGGACTGTACCATCAACAGATGTACATATGGGGGGAACGGGCAGCACCACGGGACCGGGGCTGCCGTTTCGTCCTACCAGAGGATGAACcacaagcagcagcagcaggagaagctgCCCCCTCCCTTGGCTCAGGTGCAGTGCCCTCCTCCCTCTGCTACAGTAGAGCAGATCCTTGTGGTTGGACACTCTTCACTGGAGGCCAATGGCATCGTGACCTCTGACATCCCTCACCACCCCAACCACAGTAAGATGGAAAATGGCTGCATTCTTAACGGGACCTACTCAGGAGGCTGTGTTCTGCCCAATAGGAGTGGTGCCCTCTAACGGCCAACTCCCCTGCCCTGACACTCTCCAGACCCCCAGACCTCAGGCTTTTACCTCTGACTGGGGACCTCCAAGGGACACTAACTGACTGGAGGGTCCCACCCTACCACTGGACCAGCTTGTTACTCTAGTTGACAACAAAAGCAACACTTAGGCCTAAATATTTTTGGTACTTTTGTTTGGTTGGGTTTGATGGTTCATAATAACATAATTATAATTTGAGTCCTTTGTTTACAATATGACGTCGGAGCGCTAAAGTTGAGTTTTATTCTGTTTTTAAAATAACTCAGAAGAAAATGATCTTAGTCTTAGAATTGTTGTTtctgtttttaaatgtaaaacaaatatatatatatttttagtccTGGTGGAAGTACAACATGGTCATTGGTAGTCATGGAGACACCACCTAACCCTGCATGTATAGATGCTTACGGCACCATCACATTTATGATTTGTTGTGACACGTGACATCATGATCGGTGTCATGAGTTGTCATACAACAGGAATGGAACCTTCAAATGCAACGTCCAGTGCTCATGAGATTCCTCTTATTGGGGAACGTTAATTGTTTTGGAACATTAAGTCATGTAAAGGAAAAACAGGTCTAGAATATCCTGCACTTTATTTCAAGCACCCAGTGATGCAGATACGGTAGTCGGTCAGGGAAACTAGGGTTATTTAGGTCCCCCTAAAAAATGATACAGAGATGGACCttcttttacatttttaatatTTGAGGTTGGGAAATCTGTAACAATTGTCTTTTTGTTCTATTTTTTGCGGTATTATATTTCAGGTGATCGGTTGATGTCCTCACACTTCTGTACAATtgtcatatttttgttcacttgAATtatcattttgttgttgttgtcgttgaCATCTTGTACCTCTGTGAGAGTTTGTCCAATACTAAGGTCAACTGACTCTGAACTAGCTTTGAAGGCTGCTTTGAATTCAGTATTTATTCATTTGTGATTCATTCCTCTAACATACCTTACAACATACCATCTTGATGAGATGGGAAGTACTGTATATCGTCAGATACTAAACGTTGCCAGCAACTATTCCAGTCTTATGATGTTGATCTAATGACAGTTCACTGACAAATCTGAAAACCAAATGATCTCTTCTGGAAGGATACCATGTTGAATGTTTTATGTAAATACTAAATCATTTGGGCAGTAGTGCTAAATATAATTATTTCATCATGGAGATGCTGAAAAGAGATTTCCTTGTAGTTGTTACAATAATTATCGTcattatttttgttattattaccattattgtCATTTATTGTGTTTTAAGTTGAAATGTGATACACGTGTGGTTTCAGAATCAACTTGGTTTCTTTCCCCTTTCTTTTTTTACTATTAAAATGTTTGATATATTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2073183 lncRNA upstream 3162 42683382 ~ 42685053 (+) True LOC110502156
TU2073236 lncRNA upstream 20339 42667609 ~ 42667876 (+) True G1812261
TU2073214 lncRNA upstream 82319 42605082 ~ 42605896 (+) True G1812247
TU2073220 lncRNA upstream 83289 42604539 ~ 42604926 (+) False G1812247
TU2073209 lncRNA upstream 84785 42602097 ~ 42603430 (+) True G1812242
TU2073418 lncRNA downstream 3244 42737806 ~ 42738250 (+) False G1812411
TU2073417 lncRNA downstream 3318 42737880 ~ 42739140 (+) True G1812411
TU2073437 lncRNA downstream 14366 42748928 ~ 42749262 (+) True G1812430
TU2073438 lncRNA downstream 14717 42749279 ~ 42749731 (+) True G1812431
TU2073452 lncRNA downstream 51182 42785744 ~ 42786135 (+) True G1812444
XM_036959347.1 mRNA upstream 3107 42615178 ~ 42685108 (+) False LOC110502156
XM_036959345.1 mRNA upstream 3107 42615181 ~ 42685108 (+) False LOC110502156
XM_036959346.1 mRNA upstream 3107 42615181 ~ 42685108 (+) False LOC110502156
XM_021579751.2 mRNA upstream 137245 42511973 ~ 42550970 (+) False LOC110501894
XM_036959354.1 mRNA downstream 150149 42884711 ~ 43036930 (+) False LOC110501901
XM_036959353.1 mRNA downstream 150149 42884711 ~ 43037994 (+) False LOC110501901
XM_021579762.2 mRNA downstream 479278 43213840 ~ 43226393 (+) False LOC110501905
XM_021579761.2 mRNA downstream 481779 43216341 ~ 43226393 (+) True LOC110501905
XM_021579760.2 mRNA downstream 495862 43230424 ~ 43232133 (+) True LOC110501904
TU2072843 other upstream 298928 42372306 ~ 42389287 (+) True LOC110501889
TU2072841 other upstream 347823 42329273 ~ 42340392 (+) False LOC110501889
TU2072842 other upstream 379999 42256555 ~ 42308216 (+) False LOC110501889
TU2071621 other upstream 1221866 41464478 ~ 41466349 (+) True G1810740
TU2071418 other upstream 1495723 41189689 ~ 41192492 (+) True G1810553
TU2074041 other downstream 415200 43149762 ~ 43150384 (+) True G1812953
TU2074610 other downstream 1373682 44108244 ~ 44110867 (+) False G1813442
TU2074604 other downstream 1374758 44109320 ~ 44110867 (+) False G1813442
TU2074607 other downstream 1374758 44109320 ~ 44110867 (+) False G1813442
TU2074609 other downstream 1374758 44109320 ~ 44110867 (+) True G1813442

Expression Profile