RNA id: XM_021579762.2


Basic Information

Item Value
RNA id XM_021579762.2
length 1946
RNA type mRNA
GC content 0.42
exon number 5
gene id LOC110501905
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 43213840 ~ 43226393 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGTCAGTTGACTTCATTTACTCTTTCactctgtccatccctctgctCAGTAAATGGTGCGAGACTAGATGTCCTCAGTGTAAATCATCTCTGATGAACACATGTCCCTTGTGTAATTTGCTCGCCTGGGCATTTAATTTCTTCTCATTTTTTAATCTGCTGAAAGGCTTTGAAAAAAACTTTAAATTCACCCTTTTCCAAAATGTCAGGCATCCAGATCTTGGCTTTCCTGGGCGGCCTGGTTGGGCTTGGTGCCACCTTCTGCGCCACGTTGTCCAACGAATGGAGGACCACCAGCAGAGCCTCCTCTGTCATCACGGCCACATGGGTCCTCCAGGGACTGTGGAATAACTGTGCTGGAAACGCCATTGGAGCCCTGCACTGCAGACCACACCACACTATCTTCAAACTGGAAGGTTATATTCAGGCCTGCAGGGGTCTGATGATCGCTGCTGTCTGCCTGGGCTTCTTTGGTGCCGTCTTTGCCCTGGTCGGAATGAAGTGCACCAAGATTGGGGGATCAGACCAAAGCAAAGCCAGAACGGCTTGCTTCGCCGGGGTCAATTTCATACTCAGCGGTCTCTGCTCGTTGTCCGCATGCTCCCTGTATGCACACAGAATAACATCTGAGTTTTTTGACCCCATGTTTGTTGCTCAGAAGTATGAACTGGGAGTTGCCTTGTTCATTGGTTGGGCAGGATCTATCCTGTGTGTTCTGGGAGGGGGGATATTCTGCTTCTCCGTAGTAGATAGTTCCACTAGAAGctCCAGTCGCACAGGCTATGCCTACGGAGGACCTGCCTCCACCTCCCATGTCTCTTCCCACCCTAGAGGGCATGCACAGCCCATGAGCCAGCGGCCTCCACCCAAATACAGCAGCTCCTCCAGAGCACAGCACTTTGATAAGAATGCCTATGTGTAAGGGATGATAGGGAAAATGCAGATCTTGAACAGAGGAAGACTCATCGCCACTCCAGTTAAAAGGGGAGAAAGAATATGCTACGTGACTGGCTGGCCCATTGTGTCACAAATCACGATTGCCCAGAGAGAAATCACTGGTGATTGAATCCTGCTGTCCACCTATTTATAAAGGAATTCATTTCCATTCAGAGTTGAATGGTAATCATAGCCTTTTGTTAGTTCACAAGAGATAGAGCTGATATTTTTCGTCTGACATTCTCGTGACAGAAGTTAAAggagcaatctgcagttgctCCATCCATTTTTTGACTTATAAATGAATGGTACGTCTTGAAGAAAATAACTTCTGAGTGCCTCATGTGCTTCGCTCAGCTGTCgttaaccccatcagaacccagcCTCGAAACATGGTAAAAAAAACTATAATGTTGTTATCATTAAAGATCAGTCATCCAtatctctgtctatgaatttgggagtggttacatttctccagcccttaGATTTTTTTTATGCAAGAAATTTAATATATTATTAATTTGAAAAATACAATATGTGAGAGCATTAAAATAGAGCATCAACATGAAGCCCTTTGTACACACTTGAATAGATTTTGTTTTTTGACATTAAAGTGTATATGAGTTGCTATTTCTCTTGAACGTCTCTTTAATTTTAAGACACTCATTAAAATGCTGTTaatcaataatgacaaaacatTCAAACGATTTCTGGACACGTCATGTTTTTGACCTACCATAACCtttaactacagtacagtatgtgcagtacagtatgtacagtacaagTATGTGTAAAACTGCTATCAATTTACAGTAACTCATATATTTTGGTAACACATTATTTACAGTCCTATGACAgtcttaaaataaataatttaaaaaatcaacGGGTGCCTTTTTCAGAGAATCATTTCGTTTTTTATTTAGCCTATAACAAAATCATGTGTTTTTTTTGCTTGTTTGAATGAATCCTCTCCCCGTAAAAATAAAaggtaacaataataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2074107 lncRNA upstream 3077 43210127 ~ 43210763 (+) True G1813017
TU2074098 lncRNA upstream 12539 43201047 ~ 43201301 (+) True G1813008
TU2074018 lncRNA upstream 78287 43135337 ~ 43135553 (+) True G1812930
TU2074003 lncRNA upstream 91606 43122006 ~ 43122234 (+) True G1812915
TU2073984 lncRNA upstream 104725 43108800 ~ 43109115 (+) True G1812896
TU2074165 lncRNA downstream 57880 43284273 ~ 43291106 (+) True G1813071
TU2074235 lncRNA downstream 132041 43358434 ~ 43359555 (+) True G1813123
TU2074204 lncRNA downstream 159568 43385961 ~ 43389375 (+) True G1813094
TU2074255 lncRNA downstream 176290 43402683 ~ 43402885 (+) True G1813143
TU2074256 lncRNA downstream 176547 43402940 ~ 43403259 (+) True G1813144
XM_036959353.1 mRNA upstream 175846 42884711 ~ 43037994 (+) False LOC110501901
XM_036959354.1 mRNA upstream 176910 42884711 ~ 43036930 (+) False LOC110501901
XM_036959348.1 mRNA upstream 479278 42688215 ~ 42734562 (+) False LOC110502157
XM_036959349.1 mRNA upstream 479278 42688215 ~ 42734562 (+) False LOC110502157
XM_036959347.1 mRNA upstream 528732 42615178 ~ 42685108 (+) False LOC110502156
XM_021579760.2 mRNA downstream 4031 43230424 ~ 43232133 (+) True LOC110501904
XM_021579763.2 mRNA downstream 120410 43346803 ~ 43486763 (+) True LOC110501906
XR_002470272.2 mRNA downstream 275400 43501793 ~ 43546277 (+) False LOC110501907
XM_021579767.2 mRNA downstream 275400 43501793 ~ 43549935 (+) False LOC110501907
XM_021579768.2 mRNA downstream 275400 43501793 ~ 43549935 (+) False LOC110501907
TU2074041 other upstream 63456 43149762 ~ 43150384 (+) True G1812953
TU2073416 other upstream 477973 42729601 ~ 42735867 (+) True LOC110502157
TU2073435 other upstream 489726 42723672 ~ 42724114 (+) True G1812428
TU2072843 other upstream 824553 42372306 ~ 42389287 (+) True LOC110501889
TU2072841 other upstream 873448 42329273 ~ 42340392 (+) False LOC110501889
TU2074610 other downstream 881851 44108244 ~ 44110867 (+) False G1813442
TU2074604 other downstream 882927 44109320 ~ 44110867 (+) False G1813442
TU2074607 other downstream 882927 44109320 ~ 44110867 (+) False G1813442
TU2074609 other downstream 882927 44109320 ~ 44110867 (+) True G1813442
TU2074675 other downstream 1091765 44318158 ~ 44320111 (+) True LOC110502169

Expression Profile