RNA id: XM_036959084.1


Basic Information

Item Value
RNA id XM_036959084.1
length 1080
RNA type mRNA
GC content 0.39
exon number 3
gene id LOC118943595
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 45419885 ~ 45432246 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGGAGAAACATGAAGATGTTCAACACTGTTTTAAGGACAGAAACTCTTCTTGCAGAAAGGCTTTGCTATCGACATCTATCTACATAACACTGTACATCTTCTTCTCATTGATTTCAGCAGTTACAGTATTTTTGAACATACTGGTGatcatctccatctctcacttcAAGCAGCTCCACACTCCAACCAACCTGctcatcctctctctggctgCATCAGATCTCCTGGTGGGACTGATTGTGATACCAGTAATGACTGTAGCAACAATGGAATCATGCTGGGGTTTTGGGggatatttctgtgtgtttcatgCCTACATTGCTTCTTTATGGACTTCTTTAACTCTGGGCAATTTGGTCTTGATATCTATTGACCGCTATGTTGCTGTGTGTGATCCCTTATTGTACCActctaaaataacaataacaagaatCATGTGTTGTATATCCATTACCTGGTGTTGTTGTATCATATACCGTGCTGCTAATATACAATATTTTGTAAATGTACAGGTACGAAGTAGGTGTTTGAAAGAATGTAATACTGTTGAAGAGTCTGTCTGGGTTAATATCACTGATCTTGTTATTACAATGGTTGTCCCGTGCTCTATAATTATAACACTTTATTTGAAAATCTTTGTGGTGGCCAGATCACAGGCCAGAAAGGTATTTTCAAAAGAGACTCCCAGTGTGTCTGGTGTTAAAACTGTACAAGCAAATAAGTCTGAGAGAAAAGCAGCAAAAACTCTAGCTATTGTTGTTTTCAACTATCTATTTTGTTGGATTCCATCtctatttattttcttatttttttctattttaaGTGATAATTTACTATCATATTTCATCAATTTTCTGGCACTTGTTAATTCTTTAATTAATCCAATCATTTATGCTTTCCTTTATCCATGGTTCAAACCACAACCCAGGGTCAGTGATGCAGCACCACCCCGGGCTGCATCACGTACGTGCTCTAAAGAAGTTAACACATCCATCTACACAGACGTCAGCAACGCAGCCAAGGAGAACAGCCTGCAGGTATATGTCTCCACCAGTATCTTTGTTCAGAACCAGGTCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2076868 lncRNA downstream 4912 45375493 ~ 45414973 (-) True G1815396
TU2076854 lncRNA downstream 54723 45343530 ~ 45365162 (-) True LOC110502174
TU2076790 lncRNA downstream 176872 45242797 ~ 45243013 (-) True G1815325
TU2076781 lncRNA downstream 187861 45223160 ~ 45232024 (-) True G1815317
TU2076763 lncRNA downstream 188680 45223632 ~ 45231205 (-) True G1815303
TU2076955 lncRNA upstream 113887 45546133 ~ 45546419 (-) True G1815463
TU2076958 lncRNA upstream 116139 45548385 ~ 45548871 (-) True G1815466
TU2076964 lncRNA upstream 135535 45567781 ~ 45642292 (-) True G1815472
TU2076967 lncRNA upstream 144277 45576523 ~ 45576888 (-) True G1815475
TU2076903 lncRNA upstream 150315 45582561 ~ 45587639 (-) False LOC110501943
XM_036959415.1 mRNA downstream 54072 45364490 ~ 45365813 (-) False LOC110502174
LOC118943612 mRNA downstream 452751 44965636 ~ 44967134 (-) True LOC118943612
XM_021579806.2 mRNA downstream 457006 44959757 ~ 44962879 (-) False LOC110501930
XM_036959406.1 mRNA downstream 463820 44954300 ~ 44956065 (-) True LOC110501928
XM_021579804.2 mRNA downstream 469515 44947662 ~ 44950370 (-) True LOC110501926
XM_021579814.2 mRNA upstream 24980 45457226 ~ 45458628 (-) True LOC110501936
XM_036959416.1 mRNA upstream 87601 45519847 ~ 45520832 (-) True LOC118943614
XM_021579813.2 mRNA upstream 100851 45533097 ~ 45543990 (-) True LOC110501935
XM_036959417.1 mRNA upstream 118608 45550854 ~ 45578903 (-) False LOC110501933
XM_036959418.1 mRNA upstream 118608 45550854 ~ 45578904 (-) False LOC110501933
TU2075825 other downstream 745997 44673447 ~ 44673888 (-) True G1814480
TU2075666 other downstream 866465 44510407 ~ 44553420 (-) True LOC110502171
TU2073410 other downstream 2742125 42677257 ~ 42677760 (-) True G1812404
TU2073346 other downstream 2814865 42604703 ~ 42605020 (-) True LOC110502155
TU2073040 other downstream 3030612 42386822 ~ 42389273 (-) True G1812079
TU2077141 other upstream 406504 45838750 ~ 45840982 (-) True G1815615
TU2078613 other upstream 1793305 47225551 ~ 47226646 (-) True G1816841
TU2078705 other upstream 1968876 47401122 ~ 47402047 (-) True G1816929
TU2079216 other upstream 2039048 47471294 ~ 47473384 (-) True G1817287
TU2079567 other upstream 2629803 48062049 ~ 48063644 (-) True LOC110501953

Expression Profile