RNA id: XM_036959449.1


Basic Information

Item Value
RNA id XM_036959449.1
length 3813
RNA type mRNA
GC content 0.54
exon number 25
gene id trpm2
representative False

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 47170403 ~ 47260466 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCGACAGTGAGCTGTTTCCTTGCCTCGCTGTCTTCTCTCTCAGGATGGGGGAGTCTCTGCTGCTGGAGCCCAGCTTGGCTCAGACTCTGGCCGTCAGCGCAGCTAAAACCtcgaagctctctctctctacatccaccCAGCGCTCCCTTGCCGCCTGGATCAAAGACAACATCAGGAAGAAGGAGTGTTGCTTCTACGTCGACGATGACAGTAAGGGGATCTGTAAGTGTGGTCACCAGAGGATCCACCATGTTGATGACTCTATCAAACCCGAGAACTACCTGGGAGAGACAtgggacagacacagacacgtaCACGAGGTCCCTACTGACGCTTATGGAGACATCTGGTTCGGTGGCCTTGGACAGAAGATTGGCAAGTACGTGCGTGTCTCCTCAGACACTTCTCCAGACCTGCTGTACCAGCTGCTGACAGAACAGTGGAAGCTCCCTCCTCCCAATCTGCTCATCTCTGTCACCGGAGGGGCCAAGAACTTCTACATGAAACCTCACCTCACAGCACTGTTCCGCAGGGGCCTCATTAAAGTGGCACagactacagGTGCCTGGATCATTACAGGTGGCACCCATGCAGGTGTGATGAAGCATGTAGGCCAGGCGGTGAGGGAATATGTCCTCAGTAGTGGCTCTATGGAGGGGCAAATCGTGGCCATTGGAGTGGCGACCTGGGGAGCCATACACAACAGGAGACCCCTGGTACACCTTGAGGGCCGGTTCCCAGCCCACTACTCTCTGGACATGCAGTCTCAGGGTCACCTCTCCTGtctggacaacaaccactcccACTTCCTGCTGGTGGATGATGGAACACACGGATGCTACGGAGTCGAGATAGAACTACGCTCCCGGCTAGAGAGACTAATCTCCCAGCAGCCTCTGGGAAACAGAGaGAGTGGAGTGAGGATcccagtggtgtgtgtggtgcTGAATGGGGGACCAGGCACTCTCAGTACCATCTACGGTGCCATGCTGAACAGGACCCCCTGTGTCATCCTGGAAGGGTCAGGGAGACTTGCGGACGTCGTCGCCCATGTGGCTGGTCTCCCCGTTACCAAGGTTACCCTGTCTGTCATCCACCAGCTAATGAAACAGTTCTTCGGTCCGGAGTATGACTCCTTCACAGAGCTCAAGATCATAGAATGGACAAAGAAGATTCAGGACATCATCAGGATGCCTCAGCTACTGACAGTGTTCCGTATGAGTGAAGACAACCACGATGATGTTGATGTGGCCATTCTCCAGGCGCTGCTCAAAGcCAACAGGAGCAGTGAGTCTGTTGGGATGGAGCGCTGGGAGAGACAACTGGAGCTAGCCGTAGCCTGGAACAGAGTGGACATCGCTAAGACTGACATCTTCACTGAGGATAGCCAGTGGAAGTCCAGTGACCTGCATCAGGCCATGTTCTCAGCCCTGCTGGGCCACAAGCCGCAATTTGTCCGGCTGCTCCTGGAGAACGGAGTGTGTCTGAGAGAGTTCCTGGGGGACCAGACCACTCTGTGTGACCTCTACACCCAGCTGCCCACTTCCTGCTTCTTCCTACGCCGCCTAGCCAAGCGCATCCAGACCGAGAAGAGTCGACGTAGTCAGACCCTGAGTCCTCGGGGTGCTGCAGGGAGGACCATCTCTCTCAGTCACGTCTCGGATGAGATACGCCACCTACTGGGCAGTTTCACCCAGCCCCTCTACCCCCTGCCTGGCCTGCACTCCACCAGGTACCCAAAGGAGCCCAAGGAGGATGTCGCTGTCACACTGCCACCTAAAGAGCAGCTGGAGCTCCAGGCCTCACCAGACCCAGACAGAGGACCAGGGAGAGAttcagaaaggggagaggagacttTCAGAGACCCAGGCGGAGACCTTTTCCTCTGGGCCATCCTGCAGAACCAGAAAGAGCTGGCTGAGATCGCCTGGGAGCAGTCCCGGGACTGTACGTCAGCAGCTCTAGCCGCTAGTAAGATCCTGAAGAAGCTGGCTGAGGAAGGAgcggaagaggaggatgaggcggAGGAGATGAGAGAACTGGCCAAACACTATGAGAGACACGCCATCGGTGTGTTCAGTGAGTGCCACTGCTGTGATGAGGAGCGTGCCCAGAGGATGCTAATCCGGATCTCTTCATCCTGGGGTCAAACCACTTGTCTGAGGCTGGCTCTGGAGGCTGATGACAAGAGCTTTGTTGCTCACTCTGGGGTTCAGGCTCTCCTGACCCAGATCTGGTGTGGGGAGCTGGCGGCGGACAATCCTCTGTGGAGGGTGCTGCTATGTATGCTGTTCTTCCCTCTCATTTACACTGGCTTCCTGGGATTCAGGCGTGATGAGTCCatccagagagaggcagagaggagtgcTGAGCTGCTCACCATGGAGTCATTAACAGGAAGCCAGGCCTGCACCAGGAGGAAGTATCCTGTACATGACCTCCCTGCCAGGATCCCTCTGGGTCTGAAGCCGTTGACAGTCTCCACCCGGCTGGTCagcctcttcacctctcctcagGTGAAGTTCTACTGGAACATCTTGTCCTACTTCAGCTTCCTGCTGCTGTTTTCTGTGGTGCTGATGATCGACTTCCAGACCACGCCCTCCTGGAGGGAGGGGCTTCTCTATGTCTGGCTCATCTCATTGGTCTGTGAGGAGGTCCGACAGCTGTTCCATGACCCAGATGGGTTTGGGTTCCGTAAGAAGGCTGATATGTACATTAATGACATGTGGAACATTCTAGACTTTCTGTCCATACTGCTCTTCATCATCGGCCTGGCCTTCAGactgaccaccaggttgttCTATGCAGGGAAGGTCATCCTGTGTATCGACTTCATCATCTTCTGTCTTCGTCTCATGGCCATATTCATCATCAGTAAAACTCTGGGCCCCAAGATCATCATCGTCAGGAGAATGatgtTGGACATGTTCTTCTTCATGTTCCTGCTGAGTATCTGGGTGGTAGCATACGGCGTTGCTAAGCAGGGCATCCTCATCCACAACGAGGACAGACTGGACTGGATCGTCCGGGGCGTCATCTACGAACCATACCTTATCATCTTCGGGAATATGCCCTCTAACATCGACAATGCCCTGTTTGACATCAAGGCCTGCAGTGTAAATGGTACAGAGTCTCAAAAGCCTAAATGTCCTATTCTTAACGAGGACAAGATGCCTGCCTTCCCTGAGTGGCTGACTATAATCCTACTGTGTGTCTACCTGCTGTTTGCCAACATACTGCTGCTCAACCTGCTCATAGCAATCTTCAACTATACTTTCCAGGAGGTTCAGGATAACACAGACACCATCTGGAAATTCCAGCGGTATGAACTGATCAAGGAGTACCACAGCCGACCCGCTGCCCCCCCtccactcatcctcctctcccacaTCTTCCTCTTCATCAGACGCATAGTGCTGCAGAGACCCCCCAATAGTTACAGAGCCTTCAAGGAGAGGCTGcctgaggtggaggaggaagagttaTTATCGTGGGAATCCTTTATGAAGGATAACTACCTTCTCTCCTGCAGACAGCAGCAGAGCCAGAGCATGGAGCAACGTACCACAGACACCGCTGACAAGTCTCCCAGTCAGCCAGAGCTCTCCAGTGGATCATGGACACCCTCAAAGCTCAGGGTCTACACTCTAAAGAGGAGGCTCCACAGCTGGCCTCACCTGGTAAGCTGAAGAGGTCTGAAAGTGAACCCAATGAACCCCATAgacaggagaagacagagagagagaagacatttTACCATGTCAACGCCCGGCGTCTGGACTACCCTGACAGTACCATCCCTCGCTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2078571 lncRNA downstream 579 47176158 ~ 47176466 (-) True trpm2
TU2078492 lncRNA downstream 8546 47154711 ~ 47168499 (-) False G1816786
TU2078490 lncRNA downstream 10092 47155265 ~ 47166953 (-) False G1816786
TU2078496 lncRNA downstream 13607 47157537 ~ 47163438 (-) True G1816786
TU2078494 lncRNA downstream 37279 47130129 ~ 47139766 (-) False G1816786
TU2078602 lncRNA upstream 785 47261251 ~ 47287422 (-) False G1816836
TU2078604 lncRNA upstream 785 47261251 ~ 47266877 (-) False G1816836
TU2078594 lncRNA upstream 9150 47269616 ~ 47276714 (-) False G1816836
TU2078598 lncRNA upstream 9150 47269616 ~ 47270644 (-) False G1816836
TU2078597 lncRNA upstream 20301 47280767 ~ 47287422 (-) True G1816836
XM_036959445.1 mRNA downstream 73217 47086871 ~ 47103828 (-) True LOC110501994
XM_036959446.1 mRNA downstream 73240 47086871 ~ 47103805 (-) False LOC110501994
XM_021579869.2 mRNA downstream 115718 47042225 ~ 47061327 (-) True LOC110501995
XM_036959444.1 mRNA downstream 202913 46869831 ~ 46974132 (-) False spopla
XM_036959443.1 mRNA downstream 202914 46869831 ~ 46974131 (-) False spopla
XM_036959450.1 mRNA upstream 217162 47477628 ~ 47553609 (-) False cfap65
XM_036959451.1 mRNA upstream 217162 47477628 ~ 47553609 (-) False cfap65
XM_036959453.1 mRNA upstream 368414 47628880 ~ 47632649 (-) False LOC110501961
XM_021579839.2 mRNA upstream 368414 47628880 ~ 47635640 (-) True LOC110501961
XM_036959458.1 mRNA upstream 472753 47733219 ~ 47834252 (-) False ptprna
TU2077141 other downstream 1336063 45838750 ~ 45840982 (-) True G1815615
TU2075825 other downstream 2503157 44673447 ~ 44673888 (-) True G1814480
TU2075666 other downstream 2623625 44510407 ~ 44553420 (-) True LOC110502171
TU2073410 other downstream 4499285 42677257 ~ 42677760 (-) True G1812404
TU2073346 other downstream 4572025 42604703 ~ 42605020 (-) True LOC110502155
TU2078705 other upstream 140656 47401122 ~ 47402047 (-) True G1816929
TU2079216 other upstream 210828 47471294 ~ 47473384 (-) True G1817287
TU2079567 other upstream 801583 48062049 ~ 48063644 (-) True LOC110501953
TU2079734 other upstream 1008321 48268787 ~ 48291496 (-) True G1817668
TU2079931 other upstream 1198560 48459026 ~ 48460040 (-) True G1817836

Expression Profile