RNA id: TU2080109


Basic Information

Item Value
RNA id TU2080109
length 1707
lncRNA type sense_over
GC content 0.40
exon number 2
gene id LOC110502188
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 48505445 ~ 48645921 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGCATTACATTATGGAGCCCTTTGCCtagctgtgactgtgtgtgattCCTCCATTCACCCCCTCCCTTAATTCAGATCGGTGTACTTGATGCTGCTCACTTCAGTGCTGAGGCCCAGGGCTAGAGTAGAGAGCCCCAGCAGAGAAAGAAAGTGAATTACAATAtagaacgctgtctgtctgtcacacacagGAGATGCCCTGCTCCCTGATTCAACTAACacagacagagaaggagtagCTTTGTTTCTCAGTTAGACCTGGGAGGCTATGGACTGAAGTCTCTACTGCTACATCAGATAGACCTGGGAGGCTATGGACTGAAGTCTCTACTGCTACATCAGATACATCTACCCCCCCCAGTAACAAAAcatctgtcgtaaccggccgcgaccgggaggtccgtggggcgacgtacCACTGGCATAGCGTCGTCCAggttggggagggtttggccggtagggaaatccttgtctcatcgcgcaccagcgactcctgtggcgggccgggcgcagggcgcgctaaccaaggtcgccaggtgcatggtgttggggagaaaaagggagaaaaaataaataaaaaaaATCTAACATGCCACTGCAGGAAGTATAGCTTTCAATcttcttttttgttgttttacTTACAACTATTATTTCAAATGGGGGCGAaagcaacaacaaacaaacaaaaagttaCTGTCAATTTCATCTCGTACTTAAAGTAGTCTTTTCTTCACGTAACATCCCGAAACCTGCTTTAACAATGGAAAGGCTTCTGtggtagcctattcagagtgatAAGTGATTTTCATTTCATACAATATTATCCAGAAATATTTCCTTTGGAGTGACAATCAAGCATAACTACAGAATTAGAACGTGTGCAATACTAAAAAACCAGTCTGAAGCAGATTAATTATTAGAGTGTCCTCTAGACTGTATTTTTTTTGCTAGTGAAGTGCTTCAATAGTCTACCTTTATGGGCATTGCATGCAATACTAGTTTAATGAAACATGAACAGAAGCACAGTCCGTTTTTCTAGTGCAAACGGTACGGTGTGGAAGAGTTTCACTCTACGTTCATTTTGTTTCCTAAAGTATGACAATTCATTCACAAAACACTCTATTGTACAGCATTCCCTCCGTAGTTTCagacacagccccccccccccccccaaaaaaaaaaataatatatatatttggcAAATAAAGTATGCATTGAAAGAATGGGTCTGAGCTGTGGCTGTCCTTATATGGACACGGTATGGCTACATATGTTATGAGTTAGATTTTATACATTAGATTTATTTTAAAAAGTGTCAGTGTCTTTGTAATCACATAGCCCTGATTGATTCTGTACCTAAATCTGCTTACCAAGTGGTCGCAAATGCTTCCCCATAGGCCTTCTCCATGTAATTGTAATACAGTAGATGATGAAAACTGTTCTACCGTTCTGCAACTAATTCAACTtgatttataaaaacaaaaacaaaaaaaattgtaCATTGTTGTAAATTAGCCATATTTATAATTCACTTGCAGGCTTTATTGTAAGATATAATTCTGATTTTATAGTGCAAGTTACCCCTTTATGTATTATCGTCATTATTTAGATACAACTATGTTTTTACTTACGTTTTGTCAACAGAATGATGTTgaggtaaaaataaatacaatgtaaaaaatgtaattaaaataaaaaaatattcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2079934 lncRNA downstream 44185 48460986 ~ 48461265 (-) True G1817839
TU2079925 lncRNA downstream 50019 48455230 ~ 48455431 (-) True G1817830
TU2079906 lncRNA downstream 65190 48440023 ~ 48440260 (-) True G1817813
TU2079878 lncRNA downstream 85523 48419727 ~ 48419927 (-) True G1817786
TU2079865 lncRNA downstream 94784 48410385 ~ 48410666 (-) True G1817773
TU2080167 lncRNA upstream 38833 48582562 ~ 48582970 (-) True G1818030
TU2080170 lncRNA upstream 43971 48587700 ~ 48589106 (-) True G1818033
TU2080171 lncRNA upstream 47682 48591411 ~ 48592271 (-) True G1818034
TU2080214 lncRNA upstream 111594 48655323 ~ 48655607 (-) True G1818074
TU2080216 lncRNA upstream 114057 48657786 ~ 48658031 (-) True G1818076
XM_036959466.1 mRNA downstream 285408 48139761 ~ 48220042 (-) False LOC110501956
XM_036959467.1 mRNA downstream 285408 48139761 ~ 48220042 (-) False LOC110501956
XM_036959468.1 mRNA downstream 285408 48139761 ~ 48220042 (-) False LOC110501956
XM_036959469.1 mRNA downstream 285408 48139761 ~ 48220042 (-) True LOC110501956
XM_021579829.2 mRNA downstream 440997 48057851 ~ 48064453 (-) False LOC110501953
XM_036959601.1 mRNA upstream 418483 48962212 ~ 48964633 (-) True LOC118943644
XM_036959089.1 mRNA upstream 926373 49470102 ~ 49480960 (-) True LOC118943599
XR_005038852.1 mRNA upstream 1579159 50122888 ~ 50243942 (-) False prkag3b
XM_036959479.1 mRNA upstream 1579159 50122888 ~ 50243944 (-) False prkag3b
XM_036959480.1 mRNA upstream 1579159 50122888 ~ 50243944 (-) False prkag3b
TU2080079 other downstream 35415 48469598 ~ 48470035 (-) True G1817968
TU2079931 other downstream 45410 48459026 ~ 48460040 (-) True G1817836
TU2079734 other downstream 213954 48268787 ~ 48291496 (-) True G1817668
TU2079567 other downstream 441806 48062049 ~ 48063644 (-) True LOC110501953
TU2079216 other downstream 1032066 47471294 ~ 47473384 (-) True G1817287
TU2080196 other upstream 83635 48627364 ~ 48627846 (-) True G1818059
TU2080631 other upstream 581785 49125514 ~ 49126117 (-) True G1818393
TU2080662 other upstream 622022 49165751 ~ 49166367 (-) True G1818417
TU2081122 other upstream 1173903 49717632 ~ 49719378 (-) True G1818802
TU2081603 other upstream 1665745 50209474 ~ 50213886 (-) True G1819189

Expression Profile