RNA id: TCONS_00051440


Basic Information

Item Value
RNA id TCONS_00051440
length 4987
RNA type mRNA
GC content 0.38
exon number 12
gene id XLOC_026393
representative False

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 27982269 ~ 28428198 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTCCAGGACAACCAATGAGTTGTGATACGGACCAGCTAAGGgGTAATCAAGACGCCCCAGCACCCCCAGAAACCATGGCCCAGCCTTTCCCATCGGCCCAGTTCGCTCCCCCTCAGAACGGCATTCCTGCTGAGTACACGCCGTCCCACCCTCACCCGACCCCAGACTACTCGGGCCAGACCCCGGTGGCAGAGCACACGCTGAACTTGTACACCCCTGCCCAAACGCACAGTGAGCCCAGCGGACCAGACAACAGCATACAGGCGGTCTCCGGCACAGCCACACAGACAGACGATTCAGCACAGACAGACAGCCAACAGCAAACACAGTCATCCGAAATCACAGAAATCAAAACGCAGCCCAAGAGGCTCCACGTCTCCAACATCCCCTTCAGGTTCAGAGATCCAGACCTCAGGCAAATGTTTGGCCAATTTGGTAAAATCTTAGATGTTGAAATCATATTTAATGAACGAGGATCAAAGGGTTTTGGTTTCGTAACTTTCGAAAGTAGTGCCGATGCGGACAGGGCCAGAGAGAAATTACACGGCACGGTGGTAGAAGGTCGTAAAATAGAGGTTAACAATGCAACAGCACGGGTAATGACGAATAAAAAGACAGTCAACCCATATGCAAATGGCTGGAAGTTGAATCCAGTCGTGGGTGCAGTCTACAGCCCAGAATTCTATGCAGTGCCAGGCTTCCCATACCCAGCAGCCACGGCGGCAGCGGCGGCGTACAGAGGGGCACACTTAAGAGGAAGAGGCCGCACCGTCTACAACACGTTTCGGGCAGCCGCGCCTCCCCCACACATCCCAGCCTATGGAGGTGTTGTTTACCAGGACGGGTTTTACGGTGCAGATATTTATGGTGGTTACACTGCCTACCGATACACTCAGCCTGCTACTGCTACCGCCGCTGCCTACAGTGACAGTTACGGACGAGTTTATGCTGCCGACCCCTACAACCACGCACTTGCTCCAGCAGCCACATACAGCGTTGGTGCCATGAATGCTTTCGCACCCTTGACTGATGCCAAGACCAGAAGCCACGCCGATGATGTGGGTCTCGTTCTTTCTTCTTTGCAGGCTAGTATATACCGAGGTGGATACAGTCGTTTCGCGCCAtattaaaagcaaacaaaaaatgcattacaaaaaatcataataaaaacagacaaaaaaaaataaacatttcaaaaccTATTGAGAATCTTCCTGTGGGGGTAAAGGAGGAGTAATTCAGAGGCCTGGGTATTGCAATACATGCAGTAGTGCATCATTTTAGCATCTCTCAAGAGAGAGAAGACAAAAACGGATATTTTTCATCTTATACCTCAGATATTTTGTGCTGTGTATTTTAATATTGTGGgtttttaatttctaaagatTACATAGATTGTTGGCTGTAGAGGTTTCTGTGGTGATCTAGAGAGCTGCTAGATTTTAAAAAgacgaagaagaaaaaaaaaagaataataagatACAAATTGTTAGGGCTTTATCATGTAAATGAGTTCTGTATGATAAATATACGAGTCACTTTGGGGTTATCATATTTTGTAAGAGTGTAAGTGACTAGAGTCGTCCAGTGGTTTCTGCTTTCGTTGACATTGCCTTTACgtctttgttttgttcttttggtTTCAGTTGTTTTTGGGTTCTGTGGCGTAGAGGACGAGCACGCAGGGGATGGTGGGTACGAGTAGATACGGGCGTCTGCGTGGTAAAAGGTCAGTGTAGTTGCAGGAGCACAGCAGAGACACAGAGCCGGTCAAAGAGACCACGGAGGTATCGATTATTTAAGCTGTCTTATATCAGTCATTACTCAAAGCCAAAGGTTATGTTCCTGGGGTGTTCCGTGTGTAGATTCCAACTATACATAGCAGCTCGTAGAAACTCCCCGAAAAGTTCACCacaacagtattttactgtttaactATTATCTAGTCCCTAAGTCCAACCCCTCGCTAGTTTAGGCCTACCACGAGATGTTCTTTTTATATATTACGGTACTTCCAGTACGTCGATTGATATAAATGCTGACTTTTATAATACGGGAGAGACAAAACacgacgaaaaaaaaaaaaacgaaaaaagaaaaaaagacgcCGACCATAGCGCCGgttctattttaatttagtttcttttaccttttgttttgtttagtttttttttttttctcaagagtTTATTTGTACAAGCTGAgagtgggaaaaaataaactaacaGTGTATTAAATTTGATCTGTGCAGTGAAAATGTTCTCTTATACGACAAACACAACTGTATAATGTTTTAGATTTAGTGTGGTAGACCAACTGTTAGAGAAAGGTGTCTCATTTTTTATGGAATCATACACAGATTTATATCAACACTTTACAAGTAATGCAATCATTATGTAGATATAATCATAGTATTTTTGTCAACTGTACAATTTTGCACACACGACCTGCAATTTTTTCATCACAActtcttctcctccttctcctcctcctcctcacttGTCTGTTTTCTTTCGTTTTCTCTGCTTCCTTCGGGTGTTTCGTTTTGATATCATTTTTAATGTGACATCCTTTGTACTATTATTTTCTAGAACACAGCCTTTACACTTTGAAACTGTTTGATTATCAAGAAACTGAGAACTATATGACTTGTGAAAAAGATATCTATATGTAAATAGGAATAATGATAACTATGTCATTTACAAGTGCTACACAAGCAAGCTGTCGAGGTGTTCTTGAAGAGTCGCAGCTTGGCTGTGCATATGCGAAGACTTCCCTTCATGTTGTTTACAAGTATACCTAATTAGAGGTGTTTGTCACATAtctcatttttctttattttgtatttataaaacGTTTCGATtgcataaaaatacaaacaaaagagCAGCTCCAATTTATCCGGCTGCAAAATATCCTCTTGTGTACTGTGTGCGTCACATCACACAACTTGGCAAAAATATCTTACCCACTGCTGTGATTCTGCTCTTTCTGCTTTAAGTACGTGTTGTGGACAGGCTTTCTCCTTGTCATTGTATGTGCATGCACTATGATCTGCATAACAATAACCATCAATAAAGTTTCTCAAGATAACGGGAACGGCTCTCGGAACTTTCTTGTATTCAGATGACGGAGAGCGTTTGTCCTCTGATCTGATTTCATTGCCTGAAATTGCATTGCGATGCTCAAGGCGAAGGGGAAATGATCATCTCCGAGGAGGTTAAGTGGAATTGATGCTGCCAGGTCTGAGGTGGTCATCTGTGTGCCTTTAAGAAGACTCTGTGTTTAGGATGAAGGAGAAAGATCCGATTCCGGCGGCGTGATTAGGTTATCCCACTCGCTATCTGGGATATGAAAGATCTCAGATCCTGCAAATATTTCCacatataaaagaaaagaaatatggGCTTATTTTCAGCCTGGGCTCATGAAAGATGTGGTGACATTTTTGCTAAAATTATATTAGGCTGCTTCCTGCACGTTTGCTTCACTTTCAAAGTGAAACGTCgctaaaagtcatttaaaatttttactaCAGTATGCAAGCAAACGCAACTGTTGCAACATTTttcttacagttaaagtcaaaatgatttgcccccctgaattattatccccctgtttattttttaccccgatttctgtttaacggagaaaagatttttttcaacacatttctaatcatgatagttttaataatttatctctaataactgatttattttatctttgccatgatgataatgaataatatttgactagttatttttcaagacactagtattcagtgtAAAGTGACATTTGATGGCTTAATAGGTTAATTATGCAGGtcggggtaattaggcaagttattgtaaaacgatggtttgttctgtagactatcgaaaaaatatagcttaaaggggctaataattttgacctaaaaatgttttttaaaaatttaaaacagcttttattctagccaaaataaaacaaataagactttctccagaagaaaaaacatcagacatactgtgaaaatttccttgctcttttaaacatcacttatatttttaatatttaaaaaagaaaaaaaaaaggggggctaataattctaacttaaaATCTATATTAGTTTGTGCTTAGATTGTGGCTTTttgaaaattttattattattgtatttataaaattaaatgtattaaatgagagaaaaaaaatatatgattttggATTGTCACGATCCAAAGATTAATAGCAAACTTTAACCCTAATCTGCATCATCACTGAAGTCGCACGCAATTTTAAGCTCTTCACATGAAAGCAAACTTAAGAATTCATTGAATTATTTTTTGTGCACACACAGATAGCCATGtgtcctttttttttccttttgaaagTGAAATGTCGCTAAAATGCAACTGTTTACTATGCAACTTTTATTACGTTGGTTTGTGCGCAGACCATGGTCTTTTAGGAATTGaattatcatatttataaatCAAAAGTATTAAATGAGTTGAAAATAATGTCAGAAAGATGGTACACATTGAGATTCACAGATTGATAGTAAACTTTAATACTAATTTGCATCATCAAAAAAGTTGCATGTGCACTTCaaagataataaaaaacatttatttttatttttattttgtttttttgtgcacaCACAGGTGTCAGAAAGCACACAGATAATTGTTTACATTTCATGTCTATTTGAGCTTGGATGggtgcatacagttgaagtcggaatgaTTTgccccatttttatttattttattttttaatatttcccaaattatgtttaacagagcaaggacattttcacagtatgtctgataatattttttcttctgaagaaagtcttatttgttttatttcggctagaataaaaagcagcctttaatttttttcaaaattattagcccctttaagctatattttttctaataATCTACAGATcacaccatcgttatacaataacttgcctaattcccctaacctgcc

Function

GO:

id name namespace
GO:0021854 hypothalamus development biological_process
GO:0000381 regulation of alternative mRNA splicing, via spliceosome biological_process
GO:0006397 mRNA processing biological_process
GO:0043484 regulation of RNA splicing biological_process
GO:0007399 nervous system development biological_process
GO:0060047 heart contraction biological_process
GO:0008380 RNA splicing biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040927-11 Predicted to enable mRNA binding activity. Acts upstream of or within heart contraction; hypothalamus development; and regulation of alternative mRNA splicing, via spliceosome. Predicted to be active in cytoplasm and nucleus. Is expressed in digestive system; heart; nervous system; neural keel; and skeletal muscle. Orthologous to human RBFOX1 (RNA binding fox-1 homolog 1).

Ensembl:

ensembl_id ENSDART00000191573

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00052465 lncRNA downstream 55216 27925580 ~ 27927053 (-) False XLOC_026391
TCONS_00052464 lncRNA downstream 55216 27925580 ~ 27927053 (-) True XLOC_026391
TCONS_00052462 lncRNA downstream 56232 27916224 ~ 27926037 (-) False XLOC_026391
TCONS_00052463 lncRNA downstream 58253 27921787 ~ 27924016 (-) True XLOC_026392
TCONS_00051437 lncRNA downstream 102051 27867580 ~ 27880218 (-) True XLOC_026389
TCONS_00051447 lncRNA upstream 185772 28444234 ~ 28502493 (-) True XLOC_026394
TCONS_00053036 lncRNA upstream 200872 28459334 ~ 28462351 (-) True XLOC_026395
TCONS_00051450 lncRNA upstream 437300 28695762 ~ 28697048 (-) False XLOC_026397
TCONS_00051451 lncRNA upstream 437300 28695762 ~ 28698846 (-) False XLOC_026397
TCONS_00051449 lncRNA upstream 437300 28695762 ~ 28698856 (-) True XLOC_026397
TCONS_00051438 mRNA downstream 66999 27884685 ~ 27915270 (-) True XLOC_026390
TCONS_00051436 mRNA downstream 102040 27836067 ~ 27880229 (-) False XLOC_026389
TCONS_00051435 mRNA downstream 114086 27832500 ~ 27868183 (-) False XLOC_026389
TCONS_00051434 mRNA downstream 197812 27778975 ~ 27784457 (-) True XLOC_026388
TCONS_00051433 mRNA downstream 269089 27706113 ~ 27713180 (-) True XLOC_026386
TCONS_00051448 mRNA upstream 376005 28634467 ~ 28665291 (-) True XLOC_026396
TCONS_00051452 mRNA upstream 460355 28718817 ~ 28750495 (-) True XLOC_026398
TCONS_00051454 mRNA upstream 563603 28822065 ~ 28828569 (-) False XLOC_026401
TCONS_00051455 mRNA upstream 565213 28823675 ~ 28828242 (-) True XLOC_026401
TCONS_00051456 mRNA upstream 592713 28851175 ~ 28857195 (-) True XLOC_026402
TCONS_00051431 other downstream 334446 27643356 ~ 27647823 (-) False XLOC_026385
TCONS_00051424 other downstream 898855 27083298 ~ 27083414 (-) True XLOC_026381
TCONS_00051423 other downstream 916149 27065385 ~ 27066120 (-) True XLOC_026380
TCONS_00051408 other downstream 1319104 26663048 ~ 26663165 (-) True XLOC_026371
TCONS_00051368 other downstream 2706918 25274142 ~ 25275351 (-) True XLOC_026342
TCONS_00051457 other upstream 600822 28859284 ~ 28859400 (-) True XLOC_026403
TCONS_00051462 other upstream 993487 29251949 ~ 29252065 (-) True XLOC_026406
TCONS_00051465 other upstream 1294179 29552641 ~ 29552762 (-) True XLOC_026409
TCONS_00051466 other upstream 1396499 29654961 ~ 29663743 (-) False XLOC_026411
TCONS_00051468 other upstream 1397270 29655732 ~ 29663763 (-) True XLOC_026411

Expression Profile

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