RNA id: TU2021992


Basic Information

Item Value
RNA id TU2021992
length 210
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G1765164
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 2584547 ~ 2584756 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaaaagggatcggtagcggctagtaggacggtgacaaCAACCTCAGGTGCATCATTGAGCATGAAATTGATCTTGTTTAGGGACAATACaattatcctacctagactagcctacaacaccacaatgcaatgattaattgcattattgttttcaagtgagtacaAAATTACTCTAGGCTGCAGTGGACATTTAGTTAATTCCATTTGGATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2021969 lncRNA downstream 15413 2568934 ~ 2569134 (-) True G1765141
TU2021924 lncRNA downstream 50615 2533722 ~ 2533932 (-) True G1765096
TU2021918 lncRNA downstream 55990 2528339 ~ 2528557 (-) True G1765090
TU2021911 lncRNA downstream 61391 2522811 ~ 2523156 (-) True G1765083
TU2021908 lncRNA downstream 63429 2520918 ~ 2521118 (-) True G1765080
TU2022621 lncRNA upstream 142772 2727528 ~ 2727761 (-) True G1765754
TU2022662 lncRNA upstream 204458 2789214 ~ 2789438 (-) True G1765794
TU2022670 lncRNA upstream 224305 2809061 ~ 2809576 (-) True G1765802
TU2022673 lncRNA upstream 227923 2812679 ~ 2812911 (-) True G1765805
TU2022681 lncRNA upstream 240589 2825345 ~ 2825578 (-) True G1765813
XM_021578633.2 mRNA downstream 95487 2484121 ~ 2489060 (-) True zic5
XR_002470194.2 mRNA downstream 117615 2442459 ~ 2466932 (-) True LOC110501251
XM_021578628.2 mRNA downstream 541777 2016068 ~ 2042770 (-) False gpr183a
XM_036958507.1 mRNA upstream 315070 2899826 ~ 2950367 (-) False tmtc4
XM_036958506.1 mRNA upstream 315070 2899826 ~ 2950391 (-) False tmtc4
XM_036958505.1 mRNA upstream 315070 2899826 ~ 2950860 (-) True tmtc4
XM_036958510.1 mRNA upstream 432094 3016850 ~ 3312036 (-) False nalcn
XM_036958514.1 mRNA upstream 432094 3016850 ~ 3312036 (-) False nalcn
TU2020381 other downstream 1156827 1424721 ~ 1427720 (-) True klf5b
TU2020188 other downstream 1364830 1218802 ~ 1219717 (-) True G1763459
TU2018826 other downstream 2479190 91269 ~ 105357 (-) True G1762219
TU2023027 other upstream 740965 3325721 ~ 3326343 (-) True G1766126
TU2023360 other upstream 862675 3447431 ~ 3451338 (-) False fgf14
TU2023362 other upstream 862675 3447431 ~ 3774009 (-) True fgf14
TU2026425 other upstream 3216005 5800761 ~ 5825307 (-) True G1769281
TU2026785 other upstream 3375394 5960150 ~ 5960815 (-) True G1769618

Expression Profile