RNA id: TU2022670


Basic Information

Item Value
RNA id TU2022670
length 516
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G1765802
representative True

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 2809061 ~ 2809576 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtttagacattaactccaTATTTTAAGGTTAGGGGTAAGTGTAGACATTAACTCCATAtttttaaggtcagggttaagtgttatgggatttttatcaataatgactaaattaGGTATACTGCACTGTACCTGGCAAGaattctaccctgtctttctTGTAGTATTAAATAATGTTTGTCCATTAGGAAGGGGTTATGTGGcatggacctaggaagaaaggaatgtatgtggagataagagaggacagggagggctccTCCTGAGTTATGGTTTCTGGGGAGGCTGGAACGGTCAGTTGAGGGGTTATAAACTGTGGATAGACTCATCTGAAAAtccatgtttgtgtgtatgtatgtgcgtagttTAGAAATGATATAAGAAGGACTGTAATTGTGAAAACTTTGGAGCTCTCGCAAATAAATTGGAACCTGATCAATTGTGATCTGGGAATTCTGTCTGTTTTATTTAAGACCAGAACTTTACAAACTCTGGGTATCAGACAGATAAATATAATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2022662 lncRNA downstream 19623 2789214 ~ 2789438 (-) True G1765794
TU2022621 lncRNA downstream 81300 2727528 ~ 2727761 (-) True G1765754
TU2021992 lncRNA downstream 224305 2584547 ~ 2584756 (-) True G1765164
TU2021969 lncRNA downstream 239927 2568934 ~ 2569134 (-) True G1765141
TU2021924 lncRNA downstream 275129 2533722 ~ 2533932 (-) True G1765096
TU2022673 lncRNA upstream 3103 2812679 ~ 2812911 (-) True G1765805
TU2022681 lncRNA upstream 15769 2825345 ~ 2825578 (-) True G1765813
TU2022683 lncRNA upstream 19338 2828914 ~ 2829115 (-) True G1765815
TU2022708 lncRNA upstream 39356 2848932 ~ 2849262 (-) True G1765830
TU2022712 lncRNA upstream 46322 2855898 ~ 2856098 (-) True G1765833
XM_021578633.2 mRNA downstream 320001 2484121 ~ 2489060 (-) True zic5
XR_002470194.2 mRNA downstream 342129 2442459 ~ 2466932 (-) True LOC110501251
XM_021578628.2 mRNA downstream 766291 2016068 ~ 2042770 (-) False gpr183a
XM_036958507.1 mRNA upstream 90250 2899826 ~ 2950367 (-) False tmtc4
XM_036958506.1 mRNA upstream 90250 2899826 ~ 2950391 (-) False tmtc4
XM_036958505.1 mRNA upstream 90250 2899826 ~ 2950860 (-) True tmtc4
XM_036958510.1 mRNA upstream 207274 3016850 ~ 3312036 (-) False nalcn
XM_036958514.1 mRNA upstream 207274 3016850 ~ 3312036 (-) False nalcn
TU2020381 other downstream 1381341 1424721 ~ 1427720 (-) True klf5b
TU2020188 other downstream 1589344 1218802 ~ 1219717 (-) True G1763459
TU2018826 other downstream 2703704 91269 ~ 105357 (-) True G1762219
TU2023027 other upstream 516145 3325721 ~ 3326343 (-) True G1766126
TU2023360 other upstream 637855 3447431 ~ 3451338 (-) False fgf14
TU2023362 other upstream 637855 3447431 ~ 3774009 (-) True fgf14
TU2026425 other upstream 2991185 5800761 ~ 5825307 (-) True G1769281
TU2026785 other upstream 3150574 5960150 ~ 5960815 (-) True G1769618

Expression Profile